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Transcription initiation factor TFIID subunit 11 (TAFII30 beta) (Transcription initiation factor TFIID 28 kDa subunit beta) (p28-beta)

 TAF11_DROME             Reviewed;         196 AA.
P49906; Q9VL90;
01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
01-OCT-1996, sequence version 1.
07-NOV-2018, entry version 151.
RecName: Full=Transcription initiation factor TFIID subunit 11;
AltName: Full=TAFII30 beta;
AltName: Full=Transcription initiation factor TFIID 28 kDa subunit beta;
Short=p28-beta;
Name=Taf11; Synonyms=TAF30-BETA; ORFNames=CG4079;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND INTERACTION WITH TAF2 AND TAF4.
PubMed=8276241; DOI=10.1101/gad.7.12b.2587;
Yokomori K., Chen J.L., Admon A., Zhou S., Tjian R.;
"Molecular cloning and characterization of dTAFII30 alpha and dTAFII30
beta: two small subunits of Drosophila TFIID.";
Genes Dev. 7:2587-2597(1993).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
Nakatani Y.;
"Molecular cloning of the 28 kDa subunit (p28b) of Drosophila
transcription initiation factor TFIID.";
Submitted (FEB-1994) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[4]
GENOME REANNOTATION.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[5]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-14 AND SER-16, AND
IDENTIFICATION BY MASS SPECTROMETRY.
TISSUE=Embryo;
PubMed=18327897; DOI=10.1021/pr700696a;
Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P.;
"Phosphoproteome analysis of Drosophila melanogaster embryos.";
J. Proteome Res. 7:1675-1682(2008).
-!- FUNCTION: TFIID is a multimeric protein complex that plays a
central role in mediating promoter responses to various activators
and repressors.
-!- SUBUNIT: Belongs to the TFIID complex which is composed of TATA
binding protein (Tbp) and a number of TBP-associated factors
(TAFs). Interacts with Taf2 and Taf4.
{ECO:0000269|PubMed:8276241}.
-!- INTERACTION:
Q9VJQ5:NC2beta; NbExp=3; IntAct=EBI-187533, EBI-176193;
-!- SUBCELLULAR LOCATION: Nucleus.
-!- SIMILARITY: Belongs to the TAF11 family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; S67660; AAB29541.1; -; mRNA.
EMBL; U06457; AAB19245.1; -; mRNA.
EMBL; AE014134; AAF52806.1; -; Genomic_DNA.
PIR; B49453; B49453.
RefSeq; NP_723484.1; NM_164871.3.
UniGene; Dm.19807; -.
ProteinModelPortal; P49906; -.
SMR; P49906; -.
BioGrid; 60390; 20.
DIP; DIP-18832N; -.
IntAct; P49906; 11.
STRING; 7227.FBpp0079514; -.
iPTMnet; P49906; -.
PaxDb; P49906; -.
PRIDE; P49906; -.
EnsemblMetazoa; FBtr0079924; FBpp0079514; FBgn0011291.
GeneID; 34293; -.
KEGG; dme:Dmel_CG4079; -.
CTD; 6882; -.
FlyBase; FBgn0011291; Taf11.
eggNOG; KOG3219; Eukaryota.
eggNOG; COG5251; LUCA.
GeneTree; ENSGT00390000013228; -.
InParanoid; P49906; -.
KO; K03135; -.
OMA; DLKFFQT; -.
OrthoDB; EOG091G0Y7H; -.
PhylomeDB; P49906; -.
Reactome; R-DME-674695; RNA Polymerase II Pre-transcription Events.
Reactome; R-DME-6807505; RNA polymerase II transcribes snRNA genes.
Reactome; R-DME-73776; RNA Polymerase II Promoter Escape.
Reactome; R-DME-73779; RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
Reactome; R-DME-75953; RNA Polymerase II Transcription Initiation.
Reactome; R-DME-76042; RNA Polymerase II Transcription Initiation And Promoter Clearance.
GenomeRNAi; 34293; -.
PRO; PR:P49906; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0011291; Expressed in 24 organ(s), highest expression level in embryo.
ExpressionAtlas; P49906; baseline and differential.
Genevisible; P49906; DM.
GO; GO:0005737; C:cytoplasm; IDA:FlyBase.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0070578; C:RISC-loading complex; IDA:FlyBase.
GO; GO:0005669; C:transcription factor TFIID complex; IDA:FlyBase.
GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
GO; GO:0003713; F:transcription coactivator activity; IBA:GO_Central.
GO; GO:0008134; F:transcription factor binding; IPI:FlyBase.
GO; GO:1901092; P:positive regulation of protein tetramerization; IDA:FlyBase.
GO; GO:1900370; P:positive regulation of RNA interference; IMP:FlyBase.
GO; GO:0051123; P:RNA polymerase II preinitiation complex assembly; IBA:GO_Central.
GO; GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:FlyBase.
CDD; cd08048; TAF11; 1.
Gene3D; 1.10.20.10; -; 1.
InterPro; IPR009072; Histone-fold.
InterPro; IPR006809; TAFII28.
Pfam; PF04719; TAFII28; 1.
SUPFAM; SSF47113; SSF47113; 1.
1: Evidence at protein level;
Complete proteome; Nucleus; Phosphoprotein; Reference proteome;
Transcription; Transcription regulation.
CHAIN 1 196 Transcription initiation factor TFIID
subunit 11.
/FTId=PRO_0000118906.
COMPBIAS 80 87 Poly-Glu.
MOD_RES 14 14 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 16 16 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
SEQUENCE 196 AA; 22091 MW; E852855E3F598AC9 CRC64;
MDEILFPTQQ KSNSLSDGDD VDLKFFQSAS GERKDSDTSD PGNDADRDGK DADGDNDNKN
TDGDGDSGEP AHKKLKTKKE LEEEERERMQ VLVSNFTEEQ LDRYEMYRRS AFPKAAVKRL
MQTITGCSVS QNVVIAMSGI AKVFVGEVVE EALDVMEAQG ESGALQPKFI REAVRRLRTK
DRMPIGRYQQ PYFRLN


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