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Trihelix transcription factor PTL (Trihelix DNA-binding protein PETAL LOSS)

 PTL_ARATH               Reviewed;         591 AA.
Q9LZS0; Q6Q6T0;
06-MAR-2013, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
07-JUN-2017, entry version 107.
RecName: Full=Trihelix transcription factor PTL;
AltName: Full=Trihelix DNA-binding protein PETAL LOSS;
Name=PTL; OrderedLocusNames=At5g03680; ORFNames=F17C15.100;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, DISRUPTION PHENOTYPE, TISSUE
SPECIFICITY, DEVELOPMENTAL STAGE, AND INDUCTION BY PINOID.
STRAIN=cv. C24, cv. Columbia, and cv. Landsberg erecta; TISSUE=Flower;
PubMed=15269176; DOI=10.1242/dev.01279;
Brewer P.B., Howles P.A., Dorian K., Griffith M.E., Ishida T.,
Kaplan-Levy R.N., Kilinc A., Smyth D.R.;
"PETAL LOSS, a trihelix transcription factor gene, regulates perianth
architecture in the Arabidopsis flower.";
Development 131:4035-4045(2004).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130714; DOI=10.1038/35048507;
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana.";
Nature 408:823-826(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
FUNCTION, AND DISRUPTION PHENOTYPE.
STRAIN=cv. C24, and cv. Columbia;
PubMed=10572040;
Griffith M.E., da Silva Conceicao A., Smyth D.R.;
"PETAL LOSS gene regulates initiation and orientation of second whorl
organs in the Arabidopsis flower.";
Development 126:5635-5644(1999).
[5]
FUNCTION.
STRAIN=cv. Columbia;
PubMed=18080804; DOI=10.1007/s11103-007-9272-6;
Li X., Qin G., Chen Z., Gu H., Qu L.-J.;
"A gain-of-function mutation of transcriptional factor PTL results in
curly leaves, dwarfism and male sterility by affecting auxin
homeostasis.";
Plant Mol. Biol. 66:315-327(2008).
-!- FUNCTION: Transcription factor that prevents growth. Regulates
perianth architecture in flower, mostly in the second whorl,
probably by suppressing growth between initiating sepals, ensuring
that they remain separate, and by modulating organ shapes.
Required for the establishment of auxin flux.
{ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176,
ECO:0000269|PubMed:18080804}.
-!- SUBCELLULAR LOCATION: Nucleus.
-!- TISSUE SPECIFICITY: Confined to flowers, at low levels. Also
present in 7-days-old seedlings. Barely detectable in other
tissues such as young seedlings, roots, stems, leaves and
siliques. {ECO:0000269|PubMed:15269176}.
-!- DEVELOPMENTAL STAGE: First observed in the early-developing
flower, in four zones between the initiating sepals and in their
developing margins. Later detected in the margins of expanding
sepals, petals and stamens, and in the leaf margins.
{ECO:0000269|PubMed:15269176}.
-!- INDUCTION: Expression within the newly arising sepals is repressed
via the PINOID auxin-response pathway.
{ECO:0000269|PubMed:15269176}.
-!- DISRUPTION PHENOTYPE: Disrupted perianth development, particularly
petal initiation and orientation, sometimes leading to petal
fusion. {ECO:0000269|PubMed:10572040,
ECO:0000269|PubMed:15269176}.
-----------------------------------------------------------------------
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EMBL; AY555728; AAS64746.1; -; mRNA.
EMBL; AL162506; CAB82933.1; -; Genomic_DNA.
EMBL; CP002688; AED90641.1; -; Genomic_DNA.
PIR; T48395; T48395.
RefSeq; NP_195988.1; NM_120449.3.
UniGene; At.50425; -.
ProteinModelPortal; Q9LZS0; -.
SMR; Q9LZS0; -.
BioGrid; 17033; 2.
STRING; 3702.AT5G03680.1; -.
PaxDb; Q9LZS0; -.
EnsemblPlants; AT5G03680.1; AT5G03680.1; AT5G03680.
GeneID; 831757; -.
Gramene; AT5G03680.1; AT5G03680.1; AT5G03680.
KEGG; ath:AT5G03680; -.
Araport; AT5G03680; -.
TAIR; locus:2144553; AT5G03680.
eggNOG; KOG4282; Eukaryota.
eggNOG; ENOG410YYXY; LUCA.
HOGENOM; HOG000006038; -.
InParanoid; Q9LZS0; -.
OMA; ARIDKEH; -.
OrthoDB; EOG09360EVX; -.
PhylomeDB; Q9LZS0; -.
PRO; PR:Q9LZS0; -.
Proteomes; UP000006548; Chromosome 5.
Genevisible; Q9LZS0; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003677; F:DNA binding; IDA:TAIR.
GO; GO:0042803; F:protein homodimerization activity; IDA:TAIR.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
GO; GO:0048498; P:establishment of petal orientation; IMP:TAIR.
GO; GO:0046621; P:negative regulation of organ growth; IMP:TAIR.
GO; GO:0090428; P:perianth development; IMP:TAIR.
GO; GO:0048441; P:petal development; IMP:TAIR.
GO; GO:0009909; P:regulation of flower development; IMP:TAIR.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:TAIR.
GO; GO:0010200; P:response to chitin; IEP:TAIR.
GO; GO:0048442; P:sepal development; IGI:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
InterPro; IPR017877; Myb-like_dom.
PROSITE; PS50090; MYB_LIKE; 2.
2: Evidence at transcript level;
Complete proteome; Developmental protein; DNA-binding;
Growth regulation; Nucleus; Reference proteome; Repeat; Transcription;
Transcription regulation.
CHAIN 1 591 Trihelix transcription factor PTL.
/FTId=PRO_0000421377.
DOMAIN 118 177 Myb-like 1. {ECO:0000255|PROSITE-
ProRule:PRU00133}.
DOMAIN 422 479 Myb-like 2. {ECO:0000255|PROSITE-
ProRule:PRU00133}.
CONFLICT 459 459 A -> V (in Ref. 1; AAS64746).
{ECO:0000305}.
SEQUENCE 591 AA; 66639 MW; A9DB191A51128848 CRC64;
MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD
QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF LDGGGFGSGV GGDGGGTGRW
PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY
RKTKEGKAGR QDGKHYRFFR QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT
TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD
VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ NENGSDQTMT NNVCVKGSSS
CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW
ISNGMRKEKK QINKKRKDNS SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS
TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q


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