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Tripartite terminase subunit 3 (EC 3.1.-.-) (Terminase large subunit)

 A0A193GSF3_HHV1         Unreviewed;       735 AA.
A0A193GSF3;
10-MAY-2017, integrated into UniProtKB/TrEMBL.
10-MAY-2017, sequence version 1.
28-MAR-2018, entry version 9.
RecName: Full=Tripartite terminase subunit 3 {ECO:0000256|HAMAP-Rule:MF_04013};
EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_04013};
AltName: Full=Terminase large subunit {ECO:0000256|HAMAP-Rule:MF_04013};
Name=UL15 {ECO:0000313|EMBL:ANN83989.1};
Synonyms=TRM3 {ECO:0000256|HAMAP-Rule:MF_04013};
ORFNames=HHV1gp023 {ECO:0000313|EMBL:AFE62842.1};
Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1).
Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae;
Alphaherpesvirinae; Simplexvirus.
NCBI_TaxID=10298 {ECO:0000313|EMBL:ANN83989.1};
NCBI_TaxID=9606; Homo sapiens (Human).
[1] {ECO:0000313|EMBL:ADD60027.1, ECO:0000313|Proteomes:UP000121444, ECO:0000313|Proteomes:UP000126435}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=F {ECO:0000313|EMBL:ADD60027.1}, and
H129 {ECO:0000313|EMBL:ADD60104.1};
PubMed=20219902; DOI=10.1128/JVI.00312-10;
Szpara M.L., Parsons L., Enquist L.W.;
"Sequence variability in clinical and laboratory isolates of herpes
simplex virus 1 reveals new mutations.";
J. Virol. 84:5303-5313(2010).
[2] {ECO:0000313|EMBL:AEQ77045.1, ECO:0000313|Proteomes:UP000180758}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=17 {ECO:0000313|EMBL:AEQ77045.1};
PubMed=22417106; DOI=10.1111/j.1749-6632.2011.06358.x;
Davison A.J.;
"Evolution of sexually transmitted and sexually transmissible human
herpesviruses.";
Ann. N. Y. Acad. Sci. 1230:E37-E49(2011).
[3] {ECO:0000313|EMBL:AER37669.1}
NUCLEOTIDE SEQUENCE.
STRAIN=CJ311 {ECO:0000313|EMBL:AER37739.1},
CJ360 {ECO:0000313|EMBL:AER37809.1},
CJ394 {ECO:0000313|EMBL:AER37881.1},
CJ970 {ECO:0000313|EMBL:AER37953.1}, and
TFT401 {ECO:0000313|EMBL:AER37669.1};
PubMed=22016062; DOI=10.1167/iovs.11-7812;
Kolb A.W., Adams M., Cabot E.L., Craven M., Brandt C.R.;
"Multiplex sequencing of seven ocular herpes simplex virus type-1
genomes: phylogeny, sequence variability, and SNP distribution.";
Invest. Ophthalmol. Vis. Sci. 52:9061-9073(2011).
[4] {ECO:0000313|EMBL:AFE62842.1, ECO:0000313|Proteomes:UP000180972}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=KOS {ECO:0000313|EMBL:AFE62842.1};
PubMed=22570244; DOI=10.1128/JVI.00646-12;
Macdonald S.J., Mostafa H.H., Morrison L.A., Davido D.J.;
"Genome Sequence of Herpes Simplex Virus 1 Strain KOS.";
J. Virol. 86:6371-6372(2012).
[5] {ECO:0000313|EMBL:AFI23605.1, ECO:0000313|Proteomes:UP000107500}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=KOS {ECO:0000313|EMBL:AFI23605.1};
Payne K.M., Russell D.A., Kinchington P.R.;
"Complete genome sequence of Herpes Simplex Virus Type-1 strain KOS.";
Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases.
[6] {ECO:0000313|EMBL:AGZ01876.1, ECO:0000313|Proteomes:UP000131150}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=RE {ECO:0000313|EMBL:AGZ01876.1};
Payne K.M., Twaddle A.C.Jr., Russell D.A., Kinchington P.R.;
"Genetic comparison of HSV-1 strains KOS and RE.";
Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
[7] {ECO:0000313|EMBL:AKE48593.1, ECO:0000313|Proteomes:UP000166330}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HSV-1/0116209/India/2011 {ECO:0000313|EMBL:AKE48593.1};
Bondre V.P.;
"Full-length genomic characterization of the clinical herpes simplex
virus type 1 by next-generation sequencing: Evidence for association
of an Amerindian strain with sporadic encephalitis in India.";
Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AKH80414.1}
NUCLEOTIDE SEQUENCE.
STRAIN=78S {ECO:0000313|EMBL:AKH80414.1};
PubMed=25855744; DOI=10.1128/JVI.00416-15;
Kolb A.W., Larsen I.V., Cuellar J.A., Brandt C.R.;
"Genomic, phylogenetic, and recombinational characterization of herpes
simplex virus 2 strains.";
J. Virol. 89:6427-6434(2015).
[9] {ECO:0000313|EMBL:AKG59197.1}
NUCLEOTIDE SEQUENCE.
STRAIN=10-11-3 {ECO:0000313|EMBL:AKG61726.1},
10-2-2 {ECO:0000313|EMBL:AKG59414.1},
10-2-3 {ECO:0000313|EMBL:AKG59197.1},
10-5-1 {ECO:0000313|EMBL:AKG61145.1},
10-7-1 {ECO:0000313|EMBL:AKG60356.1},
11M {ECO:0000313|EMBL:AKG60644.1}, 16S {ECO:0000313|EMBL:AKG61291.1},
2-4-2 {ECO:0000313|EMBL:AKG60213.1},
2-5-3 {ECO:0000313|EMBL:AKG60498.1},
27S {ECO:0000313|EMBL:AKG60857.1}, 3M {ECO:0000313|EMBL:AKG59777.1},
4M {ECO:0000313|EMBL:AKG59486.1}, 5-1-1 {ECO:0000313|EMBL:AKG61002.1},
5-4-2 {ECO:0000313|EMBL:AKG61872.1},
5-5-2 {ECO:0000313|EMBL:AKG60715.1},
76M {ECO:0000313|EMBL:AKG61074.1}, 82S {ECO:0000313|EMBL:AKG61581.1},
and CJ994 {ECO:0000313|EMBL:AKG59849.1};
PubMed=25926637; DOI=10.1128/JVI.00880-15;
Lee K., Kolb A.W., Sverchkov Y., Cuellar J.A., Craven M., Brandt C.R.;
"Recombination Analysis of Herpes Simplex Virus 1 Reveals a Bias
toward GC Content and the Inverted Repeat Regions.";
J. Virol. 89:7214-7223(2015).
[10] {ECO:0000313|EMBL:AJE59959.1}
NUCLEOTIDE SEQUENCE.
STRAIN=F {ECO:0000313|EMBL:AJE60172.1},
H166 {ECO:0000313|EMBL:AJE60315.1}, and
KOS {ECO:0000313|EMBL:AJE59959.1};
PubMed=25827418;
Parsons L.R., Tafuri Y.R., Shreve J.T., Bowen C.D., Shipley M.M.,
Enquist L.W., Szpara M.L.;
"Rapid genome assembly and comparison decode intrastrain variation in
human alphaherpesviruses.";
MBio 6:e02213-14(2015).
[11] {ECO:0000313|EMBL:ALO18611.1, ECO:0000313|Proteomes:UP000110586, ECO:0000313|Proteomes:UP000180950}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=KOS {ECO:0000313|EMBL:ALO18611.1}, and
KOS 1.1 {ECO:0000313|EMBL:ALO18687.1};
PubMed=26547038; DOI=10.1016/j.virol.2015.09.026;
Colgrove R.C., Liu X., Griffiths A., Raja P., Deluca N.A.,
Newman R.M., Coen D.M., Knipe D.M.;
"History and genomic sequence analysis of the herpes simplex virus 1
KOS and KOS1.1 sub-strains.";
Virology 487:215-221(2015).
[12] {ECO:0000313|EMBL:ALM22731.1, ECO:0000313|Proteomes:UP000110982}
NUCLEOTIDE SEQUENCE.
STRAIN=KOS63 {ECO:0000313|EMBL:ALM22805.1}, and
KOS79 {ECO:0000313|EMBL:ALM22731.1};
Bowen C.D., Renner D.W., Shreve J.T., Tafuri Y., Payne K.M., Dix R.D.,
Gatherer D., Kinchington P., Szpara M.L.;
"Genetic Distance in Herpes Simplex Virus Isolates of the Same
Lineage.";
Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases.
[13] {ECO:0000313|EMBL:ALM22657.1}
NUCLEOTIDE SEQUENCE.
STRAIN=RDH193 {ECO:0000313|EMBL:ALM22657.1};
Sharkey C.M., Shreve J.T., Renner D.W., Szpara M.L.;
"Sequenced Genome of Herpes Simplex Virus 1 Encephalitic Clinical
Isolate H193.";
Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases.
[14] {ECO:0000313|EMBL:ANN83989.1}
NUCLEOTIDE SEQUENCE.
STRAIN=20-14-22 {ECO:0000313|EMBL:ANN85212.1},
20-14-24 {ECO:0000313|EMBL:ANN84755.1},
20-14-7 {ECO:0000313|EMBL:ANN85137.1},
914-D2 {ECO:0000313|EMBL:ANN84219.1},
914-E3 {ECO:0000313|EMBL:ANN85061.1},
914-H2 {ECO:0000313|EMBL:ANN84602.1},
914-O2 {ECO:0000313|EMBL:ANN83912.1},
914-Y2 {ECO:0000313|EMBL:ANN84908.1},
IV-2 {ECO:0000313|EMBL:ANN83989.1}, and
IV-6 {ECO:0000313|EMBL:ANN84678.1};
Lee K., Kolb A., Larsen I.V., Craven M., Brandt C.R.;
"Mapping Murine Corneal Neovascularization and Weight Loss Virulence
Determinants in the HSV-1 Genome and the Detection of an Epistatic
Interaction between the UL and IRS/US Regions.";
J. Virol. 0:0-0(2016).
[15] {ECO:0000313|EMBL:SBS69212.1}
NUCLEOTIDE SEQUENCE.
STRAIN=3083/2008 {ECO:0000313|EMBL:SBS69212.1}, and
369/2007 {ECO:0000313|EMBL:SBS69287.1};
Kjaerup R.B., Dalgaard T.S., Juul-Madsen H.R.;
Submitted (JUN-2016) to the EMBL/GenBank/DDBJ databases.
[16] {ECO:0000313|EMBL:AOY36633.1}
NUCLEOTIDE SEQUENCE.
STRAIN=SC16 {ECO:0000313|EMBL:AOY36633.1};
Rastrojo A., Lopez-Munoz A.D., Alcami A.;
"Genome sequence of herpes simplex virus 1 (HSV-1) strain SC16.";
Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
[17] {ECO:0000313|EMBL:ASM47843.1}
NUCLEOTIDE SEQUENCE.
STRAIN=K {ECO:0000313|EMBL:ASM47843.1};
PubMed=28928148;
Oldfield L.M., Grzesik P., Voorhies A.A., Alperovich N., MacMath D.,
Najera C.D., Chandra D.S., Prasad S., Noskov V.N., Montague M.G.,
Friedman R.M., Desai P.J., Vashee S.;
"Genome-wide engineering of an infectious clone of herpes simplex
virus type 1 using synthetic genomics assembly methods.";
Proc. Natl. Acad. Sci. U.S.A. 114:E8885-E8894(2017).
[18] {ECO:0000313|EMBL:ATD84700.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HSV-N-7 {ECO:0000313|EMBL:ATD84777.1}, and
HSV-R-13 {ECO:0000313|EMBL:ATD84700.1};
Pandey U., Renner D.W., Thompson R., Szpara M.L., Sawtell N.;
"Father-to-son transmission of herpes simplex virus results in near-
perfect preservation of viral genome identity and in vitro
phenotypes.";
Submitted (APR-2017) to the EMBL/GenBank/DDBJ databases.
[19] {ECO:0000313|EMBL:ASM47843.1}
NUCLEOTIDE SEQUENCE.
STRAIN=K {ECO:0000313|EMBL:ASM47843.1};
Song R., Chenine A.L., Ruprecht R.M.;
Submitted (MAY-2017) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Component of the molecular motor that translocates viral
genomic DNA in empty capsid during DNA packaging. Forms a
tripartite terminase complex together with TRM1 and TRM2 in the
host cytoplasm. Once the complex reaches the host nucleus, it
interacts with the capsid portal vertex. This portal forms a ring
in which genomic DNA is translocated into the capsid. TRM3 carries
an RNase H-like nuclease activity that plays an important role for
the cleavage of concatemeric viral DNA into unit length genomes.
{ECO:0000256|HAMAP-Rule:MF_04013}.
-!- SUBUNIT: Interacts with the terminase subunits TRM1 and TRM2.
Interacts with portal protein. {ECO:0000256|HAMAP-Rule:MF_04013}.
-!- SUBCELLULAR LOCATION: Host nucleus {ECO:0000256|HAMAP-
Rule:MF_04013}. Note=Responsible for the nuclear localization of
the two others subunits TRM1 and TRM2. {ECO:0000256|HAMAP-
Rule:MF_04013}.
-!- SIMILARITY: Belongs to the herpesviridae TRM3 protein family.
{ECO:0000256|HAMAP-Rule:MF_04013}.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|HAMAP-Rule:MF_04013}.
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EMBL; GU734771; ADD60027.1; -; Genomic_DNA.
EMBL; GU734772; ADD60104.1; -; Genomic_DNA.
EMBL; JN555585; AEQ77045.1; -; Genomic_DNA.
EMBL; JN420337; AER37669.1; -; Genomic_DNA.
EMBL; JN420338; AER37739.1; -; Genomic_DNA.
EMBL; JN420339; AER37809.1; -; Genomic_DNA.
EMBL; JN420340; AER37881.1; -; Genomic_DNA.
EMBL; JN420341; AER37953.1; -; Genomic_DNA.
EMBL; JQ673480; AFE62842.1; -; Genomic_DNA.
EMBL; JQ780693; AFI23605.1; -; Genomic_DNA.
EMBL; KF498959; AGZ01876.1; -; Genomic_DNA.
EMBL; KM222721; AJE59959.1; -; Genomic_DNA.
EMBL; KM222722; AJE60030.1; -; Genomic_DNA.
EMBL; KM222723; AJE60101.1; -; Genomic_DNA.
EMBL; KM222724; AJE60172.1; -; Genomic_DNA.
EMBL; KM222725; AJE60245.1; -; Genomic_DNA.
EMBL; KM222726; AJE60315.1; -; Genomic_DNA.
EMBL; KJ847330; AKE48593.1; -; Genomic_DNA.
EMBL; KR011274; AKG59197.1; -; Genomic_DNA.
EMBL; KR011277; AKG59414.1; -; Genomic_DNA.
EMBL; KR011278; AKG59486.1; -; Genomic_DNA.
EMBL; KR011282; AKG59777.1; -; Genomic_DNA.
EMBL; KR011283; AKG59849.1; -; Genomic_DNA.
EMBL; KR011288; AKG60213.1; -; Genomic_DNA.
EMBL; KR011290; AKG60356.1; -; Genomic_DNA.
EMBL; KR011292; AKG60498.1; -; Genomic_DNA.
EMBL; KR011294; AKG60644.1; -; Genomic_DNA.
EMBL; KR011295; AKG60715.1; -; Genomic_DNA.
EMBL; KR011297; AKG60857.1; -; Genomic_DNA.
EMBL; KR011299; AKG61002.1; -; Genomic_DNA.
EMBL; KR011300; AKG61074.1; -; Genomic_DNA.
EMBL; KR011301; AKG61145.1; -; Genomic_DNA.
EMBL; KR011303; AKG61291.1; -; Genomic_DNA.
EMBL; KR011307; AKG61581.1; -; Genomic_DNA.
EMBL; KR011309; AKG61726.1; -; Genomic_DNA.
EMBL; KR011311; AKG61872.1; -; Genomic_DNA.
EMBL; KR052507; AKH80414.1; -; Genomic_DNA.
EMBL; KT425108; ALM22657.1; -; Genomic_DNA.
EMBL; KT425109; ALM22731.1; -; Genomic_DNA.
EMBL; KT425110; ALM22805.1; -; Genomic_DNA.
EMBL; KT899744; ALO18611.1; -; Genomic_DNA.
EMBL; KT887224; ALO18687.1; -; Genomic_DNA.
EMBL; KX265022; ANN83912.1; -; Genomic_DNA.
EMBL; KX265023; ANN83989.1; -; Genomic_DNA.
EMBL; KX265026; ANN84219.1; -; Genomic_DNA.
EMBL; KX265031; ANN84602.1; -; Genomic_DNA.
EMBL; KX265032; ANN84678.1; -; Genomic_DNA.
EMBL; KX265033; ANN84755.1; -; Genomic_DNA.
EMBL; KX265035; ANN84908.1; -; Genomic_DNA.
EMBL; KX265037; ANN85061.1; -; Genomic_DNA.
EMBL; KX265038; ANN85137.1; -; Genomic_DNA.
EMBL; KX265039; ANN85212.1; -; Genomic_DNA.
EMBL; KX946970; AOY36633.1; -; Genomic_DNA.
EMBL; MF156584; ASM47843.1; -; Genomic_DNA.
EMBL; KY922718; ATD84700.1; -; Genomic_DNA.
EMBL; KY922719; ATD84777.1; -; Genomic_DNA.
EMBL; LT594107; SBS69212.1; -; Genomic_DNA.
EMBL; LT594112; SBS69287.1; -; Genomic_DNA.
RefSeq; YP_009137089.1; NC_001806.2.
GeneID; 2703385; -.
KEGG; vg:2703385; -.
Proteomes; UP000107500; Genome.
Proteomes; UP000110586; Genome.
Proteomes; UP000110982; Genome.
Proteomes; UP000121444; Genome.
Proteomes; UP000126435; Genome.
Proteomes; UP000131150; Genome.
Proteomes; UP000166330; Genome.
Proteomes; UP000180758; Genome.
Proteomes; UP000180950; Genome.
Proteomes; UP000180972; Genome.
GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-UniRule.
GO; GO:0006323; P:DNA packaging; IEA:UniProtKB-UniRule.
GO; GO:0019076; P:viral release from host cell; IEA:UniProtKB-UniRule.
Gene3D; 3.30.420.320; -; 1.
HAMAP; MF_04013; HSV_TRM3; 1.
InterPro; IPR003498; DNA_pack_C.
InterPro; IPR038435; DNA_pack_C_sf.
InterPro; IPR003499; DNA_pack_N.
InterPro; IPR033663; HSV_TRM3.
Pfam; PF02499; DNA_pack_C; 1.
Pfam; PF02500; DNA_pack_N; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000107500,
ECO:0000313|Proteomes:UP000110586, ECO:0000313|Proteomes:UP000110982,
ECO:0000313|Proteomes:UP000121444};
DNA-binding {ECO:0000256|HAMAP-Rule:MF_04013};
Host nucleus {ECO:0000256|HAMAP-Rule:MF_04013};
Hydrolase {ECO:0000256|HAMAP-Rule:MF_04013};
Viral genome packaging {ECO:0000256|HAMAP-Rule:MF_04013};
Viral release from host cell {ECO:0000256|HAMAP-Rule:MF_04013}.
DOMAIN 55 347 DNA_pack_N. {ECO:0000259|Pfam:PF02500}.
DOMAIN 373 728 DNA_pack_C. {ECO:0000259|Pfam:PF02499}.
MOTIF 258 265 Walker A motif. {ECO:0000256|HAMAP-
Rule:MF_04013}.
MOTIF 352 357 Walker B motif. {ECO:0000256|HAMAP-
Rule:MF_04013}.
ACT_SITE 357 357 For ATPase activity. {ECO:0000256|HAMAP-
Rule:MF_04013}.
ACT_SITE 509 509 For nuclease activity.
{ECO:0000256|HAMAP-Rule:MF_04013}.
ACT_SITE 581 581 For nuclease activity.
{ECO:0000256|HAMAP-Rule:MF_04013}.
ACT_SITE 707 707 For nuclease activity.
{ECO:0000256|HAMAP-Rule:MF_04013}.
SEQUENCE 735 AA; 80923 MW; A7B8D69C3E6CD965 CRC64;
MFGQQLASDV QQYLERLEKQ RQLKVGADEA SAGLTMGGDA LRVPFLDFAT ATPKRHQTVV
PGVGTLHDCC EHSPLFSAVA RRLLFNSLVP AQLKGRDFGG DHTAKLEFLA PELVRAVARL
RFKECAPADV VPQRNAYYSV LNTFQALHRS EAFRQLVHFV RDFAQLLKTS FRASSLTETT
GPPKKRAKVD VATHGRTYGT LELFQKMILM HATYFLAAVL LGDHAEQVNT FLRLVFEIPL
FSDAAVRHFR QRATVFLVPR RHGKTWFLVP LIALSLASFR GIKIGYTAHI RKATEPVFEE
IDACLRGWFG SARVDHVKGE TISFSFPDGS RSTIVFASSH NTNGIRGQDF NLLFVDEANF
IRPDAVQTIM GFLNQANCKI IFVSSTNTGK ASTSFLYNLR GAADELLNVV TYICDDHMPR
VVTHTNATAC SCYILNKPVF ITMDGAVRRT ADLFLADSFM QEIIGGQARE TGDDRPVLTK
SAGERFLLYR PSTTTNSGLM APDLYVYVDP AFTANTRASG TGVAVVGRYR DDYIIFALEH
FFLRALTGSA PADIARCVVH SLTQVLALHP GAFRGVRVAV EGNSSQDSAV AIATHVHTEM
HRLLASEGAD AGSGPELLFY HCEPPGSAVL YPFFLLNKQK TPAFEHFIKK FNSGGVMASQ
EIVSATVRLQ TDPVEYLLEQ LNNLTETVSP NTDVRTYSGK RNGASDDLMV AVIMAIYLAA
QAGPPHTFAP ITRVS


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