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Tumor necrosis factor receptor superfamily member 16 (Low affinity neurotrophin receptor p75NTR) (Low-affinity nerve growth factor receptor) (NGF receptor) (CD antigen CD271)

 TNR16_MOUSE             Reviewed;         417 AA.
Q9Z0W1;
27-MAY-2002, integrated into UniProtKB/Swiss-Prot.
01-MAY-1999, sequence version 1.
27-SEP-2017, entry version 143.
RecName: Full=Tumor necrosis factor receptor superfamily member 16;
AltName: Full=Low affinity neurotrophin receptor p75NTR;
AltName: Full=Low-affinity nerve growth factor receptor;
Short=NGF receptor;
AltName: CD_antigen=CD271;
Flags: Precursor;
Name=Ngfr; Synonyms=Tnfrsf16;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=A;
PubMed=9857182; DOI=10.1093/emboj/17.24.7250;
Tuffereau C., Benejean J., Blondel D., Kieffer B., Flamand A.;
"Low-affinity nerve-growth factor receptor (p75NTR) can serve as a
receptor for rabies virus.";
EMBO J. 17:7250-7259(1998).
[2]
INTERACTION WITH BEX3.
PubMed=11830582; DOI=10.1074/jbc.M106342200;
Mukai J., Shoji S., Kimura M.T., Okubo S., Sano H., Suvanto P., Li Y.,
Irie S., Sato T.-A.;
"Structure-function analysis of NADE: identification of regions that
mediate nerve growth factor-induced apoptosis.";
J. Biol. Chem. 277:13973-13982(2002).
[3]
INTERACTION WITH RTN4R.
PubMed=22923615; DOI=10.1074/jbc.M112.389916;
Nakaya N., Sultana A., Lee H.S., Tomarev S.I.;
"Olfactomedin 1 interacts with the Nogo A receptor complex to regulate
axon growth.";
J. Biol. Chem. 287:37171-37184(2012).
[4]
FUNCTION, AND INTERACTION WITH RAB31.
PubMed=22460790; DOI=10.1073/pnas.1103638109;
Baeza-Raja B., Li P., Le Moan N., Sachs B.D., Schachtrup C.,
Davalos D., Vagena E., Bridges D., Kim C., Saltiel A.R., Olefsky J.M.,
Akassoglou K.;
"p75 neurotrophin receptor regulates glucose homeostasis and insulin
sensitivity.";
Proc. Natl. Acad. Sci. U.S.A. 109:5838-5843(2012).
[5]
FUNCTION, AND INDUCTION.
PubMed=23785138; DOI=10.1523/JNEUROSCI.2757-12.2013;
Baeza-Raja B., Eckel-Mahan K., Zhang L., Vagena E., Tsigelny I.F.,
Sassone-Corsi P., Ptacek L.J., Akassoglou K.;
"p75 neurotrophin receptor is a clock gene that regulates oscillatory
components of circadian and metabolic networks.";
J. Neurosci. 33:10221-10234(2013).
-!- FUNCTION: Low affinity receptor which can bind to NGF, BDNF, NT-3,
and NT-4. Can mediate cell survival as well as cell death of
neural cells (By similarity). Plays a role in the regulation of
the translocation of GLUT4 to the cell surface in adipocytes and
skeletal muscle cells in response to insulin, probably by
regulating RAB31 activity, and thereby contributes to the
regulation of insulin-dependent glucose uptake. Binds to rabies
virus glycoprotein Gs. Necessary for the circadian oscillation of
the clock genes ARNTL/BMAL1, PER1, PER2 and NR1D1 in the
suprachiasmatic nucleus (SCN) of the brain and in liver and of the
genes involved in glucose and lipid metabolism in the liver.
{ECO:0000250, ECO:0000269|PubMed:22460790,
ECO:0000269|PubMed:23785138}.
-!- SUBUNIT: Homodimer; disulfide-linked. Interacts with p75NTR-
associated cell death executor. Interacts with TRAF2, TRAF4,
TRAF6, PTPN13 and RANBP9. Interacts through TRAF6 with SQSTM1
which bridges NGFR to NTRK1. Interacts with BEX1 and BEX3.
Interacts with KIDINS220 and NTRK1. Can form a ternary complex
with NTRK1 and KIDINS220 and this complex is affected by the
expression levels of KIDINS220. An increase in KIDINS220
expression leads to a decreased association of NGFR and NTRK1.
Interacts (via death domain) with RAB31. Interacts with NTRK2; may
regulate the ligand specificity of the NTRK2 receptor. Interacts
with LINGO1 and NRADD. Interacts with MAGED1; the interaction
antagonizes the association NGFR:NTRK1. Interacts with RTN4R
(PubMed:22923615). {ECO:0000269|PubMed:11830582,
ECO:0000269|PubMed:22460790, ECO:0000269|PubMed:22923615}.
-!- INTERACTION:
Q9EPR5:Sorcs2; NbExp=4; IntAct=EBI-4411273, EBI-9915438;
-!- SUBCELLULAR LOCATION: Membrane {ECO:0000250}; Single-pass type I
membrane protein {ECO:0000250}.
-!- INDUCTION: Expression oscillates in a circadian manner in the
suprachiasmatic nucleus (SCN) of the brain and in liver.
Expression seen at higher levels during the light period and lower
during the dark period. {ECO:0000269|PubMed:23785138}.
-!- DOMAIN: Death domain is responsible for interaction with RANBP9.
{ECO:0000250}.
-!- DOMAIN: The extracellular domain is responsible for interaction
with NTRK1. {ECO:0000250}.
-!- PTM: N- and O-glycosylated. {ECO:0000250}.
-!- PTM: Phosphorylated on serine residues. {ECO:0000250}.
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EMBL; AF105292; AAD17943.1; -; mRNA.
UniGene; Mm.283893; -.
ProteinModelPortal; Q9Z0W1; -.
SMR; Q9Z0W1; -.
CORUM; Q9Z0W1; -.
IntAct; Q9Z0W1; 6.
MINT; MINT-243918; -.
STRING; 10090.ENSMUSP00000000122; -.
iPTMnet; Q9Z0W1; -.
PhosphoSitePlus; Q9Z0W1; -.
MaxQB; Q9Z0W1; -.
PaxDb; Q9Z0W1; -.
PeptideAtlas; Q9Z0W1; -.
PRIDE; Q9Z0W1; -.
MGI; MGI:97323; Ngfr.
eggNOG; ENOG410IQFC; Eukaryota.
eggNOG; ENOG4111F3C; LUCA.
HOVERGEN; HBG060431; -.
InParanoid; Q9Z0W1; -.
Reactome; R-MMU-193648; NRAGE signals death through JNK.
Reactome; R-MMU-205043; NRIF signals cell death from the nucleus.
PRO; PR:Q9Z0W1; -.
Proteomes; UP000000589; Unplaced.
GO; GO:0009986; C:cell surface; IDA:BHF-UCL.
GO; GO:0005911; C:cell-cell junction; IDA:MGI.
GO; GO:0005737; C:cytoplasm; IDA:MGI.
GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
GO; GO:0043005; C:neuron projection; IBA:GO_Central.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0005886; C:plasma membrane; IDA:MGI.
GO; GO:0014069; C:postsynaptic density of dendrite; IDA:MGI.
GO; GO:0005516; F:calmodulin binding; ISS:UniProtKB.
GO; GO:0015026; F:coreceptor activity; ISO:MGI.
GO; GO:0005035; F:death receptor activity; IDA:MGI.
GO; GO:0048406; F:nerve growth factor binding; IDA:MGI.
GO; GO:0017137; F:Rab GTPase binding; IDA:UniProtKB.
GO; GO:0005031; F:tumor necrosis factor-activated receptor activity; IBA:GO_Central.
GO; GO:0031625; F:ubiquitin protein ligase binding; ISO:MGI.
GO; GO:0006919; P:activation of cysteine-type endopeptidase activity involved in apoptotic process; ISO:MGI.
GO; GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.
GO; GO:0007411; P:axon guidance; IMP:MGI.
GO; GO:0007417; P:central nervous system development; IMP:MGI.
GO; GO:0032922; P:circadian regulation of gene expression; IMP:UniProtKB.
GO; GO:0007623; P:circadian rhythm; IEP:UniProtKB.
GO; GO:0016048; P:detection of temperature stimulus; IMP:MGI.
GO; GO:0035907; P:dorsal aorta development; IMP:UniProtKB.
GO; GO:0042593; P:glucose homeostasis; IMP:UniProtKB.
GO; GO:0031069; P:hair follicle morphogenesis; IMP:MGI.
GO; GO:0006955; P:immune response; IBA:GO_Central.
GO; GO:0006954; P:inflammatory response; IBA:GO_Central.
GO; GO:0006886; P:intracellular protein transport; IMP:UniProtKB.
GO; GO:1903588; P:negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; ISO:MGI.
GO; GO:0040037; P:negative regulation of fibroblast growth factor receptor signaling pathway; IMP:MGI.
GO; GO:0051799; P:negative regulation of hair follicle development; IMP:MGI.
GO; GO:0010977; P:negative regulation of neuron projection development; IBA:GO_Central.
GO; GO:0021675; P:nerve development; IMP:MGI.
GO; GO:0043065; P:positive regulation of apoptotic process; TAS:Reactome.
GO; GO:2001235; P:positive regulation of apoptotic signaling pathway; IDA:MGI.
GO; GO:0048146; P:positive regulation of fibroblast proliferation; IMP:MGI.
GO; GO:0042488; P:positive regulation of odontogenesis of dentin-containing tooth; IMP:MGI.
GO; GO:1902895; P:positive regulation of pri-miRNA transcription from RNA polymerase II promoter; ISO:MGI.
GO; GO:1900182; P:positive regulation of protein localization to nucleus; ISO:MGI.
GO; GO:0010468; P:regulation of gene expression; IMP:MGI.
GO; GO:2001273; P:regulation of glucose import in response to insulin stimulus; IMP:UniProtKB.
GO; GO:0032496; P:response to lipopolysaccharide; IBA:GO_Central.
GO; GO:0007266; P:Rho protein signal transduction; ISO:MGI.
GO; GO:0043588; P:skin development; IMP:MGI.
CDD; cd13416; TNFRSF16; 1.
InterPro; IPR011029; DEATH-like_dom.
InterPro; IPR000488; Death_domain.
InterPro; IPR001368; TNFR/NGFR_Cys_rich_reg.
InterPro; IPR022325; TNFR_16.
InterPro; IPR034046; TNFRSF16_N.
Pfam; PF00531; Death; 1.
Pfam; PF00020; TNFR_c6; 2.
PRINTS; PR01966; TNFACTORR16.
SMART; SM00005; DEATH; 1.
SMART; SM00208; TNFR; 4.
SUPFAM; SSF47986; SSF47986; 1.
PROSITE; PS50017; DEATH_DOMAIN; 1.
PROSITE; PS00652; TNFR_NGFR_1; 3.
PROSITE; PS50050; TNFR_NGFR_2; 4.
1: Evidence at protein level;
Apoptosis; Biological rhythms; Complete proteome;
Developmental protein; Differentiation; Disulfide bond; Glycoprotein;
Membrane; Neurogenesis; Phosphoprotein; Receptor; Reference proteome;
Repeat; Signal; Transmembrane; Transmembrane helix.
SIGNAL 1 21 {ECO:0000250}.
CHAIN 22 417 Tumor necrosis factor receptor
superfamily member 16.
/FTId=PRO_0000034592.
TOPO_DOM 22 246 Extracellular. {ECO:0000255}.
TRANSMEM 247 265 Helical. {ECO:0000255}.
TOPO_DOM 266 417 Cytoplasmic. {ECO:0000255}.
REPEAT 24 57 TNFR-Cys 1.
REPEAT 59 100 TNFR-Cys 2.
REPEAT 101 139 TNFR-Cys 3.
REPEAT 141 181 TNFR-Cys 4.
DOMAIN 346 411 Death. {ECO:0000255|PROSITE-
ProRule:PRU00064}.
REGION 319 334 Mediates interaction with KIDINS220.
{ECO:0000250}.
COMPBIAS 190 241 Ser/Thr-rich.
MOD_RES 304 304 Phosphoserine.
{ECO:0000250|UniProtKB:P08138}.
CARBOHYD 53 53 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 25 36 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 37 50 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 40 57 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 60 76 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 79 92 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 82 100 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 102 115 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 118 131 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 121 139 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 142 157 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 160 173 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 163 181 {ECO:0000255|PROSITE-ProRule:PRU00206}.
SEQUENCE 417 AA; 44686 MW; 5D7A4510DB8AF9B2 CRC64;
MDRLRLLLLL LLLLGVSFGG AKETCSTGMY THSGECCKAC NLGEGVAQPC GANQTVCEPC
LDSVTFSDVV SATEPCKPCT ECLGLQSMSA PCVEADDAVC RCSYGYYQDE ETGRCEACSV
CGVGSGLVFS CQDKQNTVCE ECPEGTYSDE ANHVDPCLPC TVCEDTERQL RECTPWADAE
CEEIPGRWIT RSTPPEGSDV TTPSTQEPEA PPERDLIAST VADTVTTVMG SSQPVVTRGT
ADNLIPVYCS ILAAVVVGLV AYIAFKRWNS CKQNKQGANS RPVNQTPPPE GEKLHSDSGI
SVDSQSLHDQ QTHTQTASAQ ALKGDGNLYS SLPLTKREEV EKLLNGDTWR HLAGELGYQP
EHIDSFTHEA CPVRALLASW GAQDSATLDA LLAALRRIQR ADIVESLCSE STATSPV


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