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Tumor necrosis factor receptor superfamily member 9 (4-1BB ligand receptor) (CDw137) (T-cell antigen 4-1BB homolog) (T-cell antigen ILA) (CD antigen CD137)

 TNR9_HUMAN              Reviewed;         255 AA.
Q07011;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
01-FEB-1995, sequence version 1.
05-DEC-2018, entry version 168.
RecName: Full=Tumor necrosis factor receptor superfamily member 9;
AltName: Full=4-1BB ligand receptor;
AltName: Full=CDw137;
AltName: Full=T-cell antigen 4-1BB homolog;
AltName: Full=T-cell antigen ILA;
AltName: CD_antigen=CD137;
Flags: Precursor;
Name=TNFRSF9; Synonyms=CD137, ILA;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Blood;
PubMed=8088337; DOI=10.1002/eji.1830240943;
Alderson M.R., Smith C.A., Tough T.W., Davis-Smith T., Armitage R.J.,
Falk B., Roux E., Baker E., Sutherland G.R., Din W.S., Goodwin R.G.;
"Molecular and biological characterization of human 4-1BB and its
ligand.";
Eur. J. Immunol. 24:2219-2227(1994).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Blood;
PubMed=8262389; DOI=10.1016/0378-1119(93)90110-O;
Schwarz H., Tuckwell J., Lotz M.;
"A receptor induced by lymphocyte activation (ILA): a new member of
the human nerve-growth-factor/tumor-necrosis-factor receptor family.";
Gene 134:295-298(1993).
[3]
SEQUENCE REVISION TO 107.
Schwarz H.;
Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Blood;
PubMed=7622190; DOI=10.1016/0165-2478(94)00227-I;
Zhou Z., Kim S., Hurtado J., Lee Z.H., Kim K.K., Pollok K.E.,
Kwon B.S.;
"Characterization of human homologue of 4-1BB and its ligand.";
Immunol. Lett. 45:67-73(1995).
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS THR-56; ASN-115 AND
ASP-176.
NIEHS SNPs program;
Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=16710414; DOI=10.1038/nature04727;
Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D.,
Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A.,
Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F.,
McDonald L., Evans R., Phillips K., Atkinson A., Cooper R., Jones C.,
Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P.,
Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K.,
Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G.,
Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D.,
Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G.,
Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J.,
Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H.,
Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L.,
Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J.,
Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R.,
Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D.,
Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G.,
Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M.,
Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J.,
Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M.,
Loveland J., Lovell J., Lush M.J., Lyne R., Martin S.,
Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S.,
Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N.,
Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V.,
Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J.,
Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E.,
Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C.,
Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z.,
Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E.,
Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A.,
Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R.,
Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V.,
Beck S., Rogers J., Bentley D.R.;
"The DNA sequence and biological annotation of human chromosome 1.";
Nature 441:315-321(2006).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Kidney;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[8]
PROTEIN SEQUENCE OF 24-38.
PubMed=15340161; DOI=10.1110/ps.04682504;
Zhang Z., Henzel W.J.;
"Signal peptide prediction based on analysis of experimentally
verified cleavage sites.";
Protein Sci. 13:2819-2824(2004).
[9]
INTERACTION WITH TRAF1; TRAF2 AND TRAF3.
PubMed=9418902; DOI=10.1128/MCB.18.1.558;
Arch R.H., Thompson C.B.;
"4-1BB and Ox40 are members of a tumor necrosis factor (TNF)-nerve
growth factor receptor subfamily that bind TNF receptor-associated
factors and activate nuclear factor kappaB.";
Mol. Cell. Biol. 18:558-565(1998).
[10]
INTERACTION WITH TRAF1 AND TRAF2.
PubMed=9607925; DOI=10.1084/jem.187.11.1849;
Saoulli K., Lee S.Y., Cannons J.L., Yeh W.C., Santana A.,
Goldstein M.D., Bangia N., DeBenedette M.A., Mak T.W., Choi Y.,
Watts T.H.;
"CD28-independent, TRAF2-dependent costimulation of resting T cells by
4-1BB ligand.";
J. Exp. Med. 187:1849-1862(1998).
[11]
INTERACTION WITH LRR-REPEAT PROTEIN 1/LRR-1.
PubMed=11804328;
Jang I.-K., Lee Z.-H., Kim H.-H., Hill J.M., Kim J.-D., Kwon B.S.;
"A novel leucine-rich repeat protein (LRR-1): potential involvement in
4-1BB-mediated signal transduction.";
Mol. Cells 12:304-312(2001).
[12]
VARIANT [LARGE SCALE ANALYSIS] GLY-250.
PubMed=16959974; DOI=10.1126/science.1133427;
Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D.,
Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S.,
Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J.,
Dawson D., Willson J.K.V., Gazdar A.F., Hartigan J., Wu L., Liu C.,
Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N.,
Vogelstein B., Kinzler K.W., Velculescu V.E.;
"The consensus coding sequences of human breast and colorectal
cancers.";
Science 314:268-274(2006).
-!- FUNCTION: Receptor for TNFSF9/4-1BBL. Possibly active during T
cell activation.
-!- SUBUNIT: Interacts with TRAF1, TRAF2 and TRAF3. Interacts with
LRR-repeat protein 1/LRR-1. {ECO:0000269|PubMed:11804328,
ECO:0000269|PubMed:9418902, ECO:0000269|PubMed:9607925}.
-!- SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane
protein.
-!- TISSUE SPECIFICITY: Expressed on the surface of activated T-cells.
-!- WEB RESOURCE: Name=NIEHS-SNPs;
URL="http://egp.gs.washington.edu/data/tnfrsf9/";
-----------------------------------------------------------------------
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EMBL; U03397; AAA53133.1; -; mRNA.
EMBL; L12964; AAA62478.2; -; mRNA.
EMBL; AY438976; AAR05440.1; -; Genomic_DNA.
EMBL; AL009183; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC006196; AAH06196.1; -; mRNA.
CCDS; CCDS92.1; -.
PIR; I38426; I38426.
RefSeq; NP_001552.2; NM_001561.5.
RefSeq; XP_011539688.1; XM_011541386.2.
UniGene; Hs.738942; -.
UniGene; Hs.86447; -.
PDB; 6A3V; X-ray; 3.39 A; B/D/F/H/J/L/N/P/R/T/V/X=24-180.
PDB; 6A3W; X-ray; 2.00 A; C/F/I/L=24-180.
PDB; 6BWV; X-ray; 2.40 A; D/E=24-160.
PDB; 6CPR; X-ray; 2.70 A; D/E/F=23-160.
PDB; 6CU0; X-ray; 3.20 A; G/H/I/J/K/L=23-160.
PDBsum; 6A3V; -.
PDBsum; 6A3W; -.
PDBsum; 6BWV; -.
PDBsum; 6CPR; -.
PDBsum; 6CU0; -.
ProteinModelPortal; Q07011; -.
SMR; Q07011; -.
BioGrid; 109817; 13.
DIP; DIP-3021N; -.
ELM; Q07011; -.
IntAct; Q07011; 1.
STRING; 9606.ENSP00000366729; -.
ChEMBL; CHEMBL3712857; -.
GuidetoPHARMACOLOGY; 1878; -.
iPTMnet; Q07011; -.
PhosphoSitePlus; Q07011; -.
BioMuta; TNFRSF9; -.
DMDM; 728738; -.
PaxDb; Q07011; -.
PeptideAtlas; Q07011; -.
PRIDE; Q07011; -.
ProteomicsDB; 58498; -.
DNASU; 3604; -.
Ensembl; ENST00000377507; ENSP00000366729; ENSG00000049249.
Ensembl; ENST00000615230; ENSP00000478699; ENSG00000049249.
GeneID; 3604; -.
KEGG; hsa:3604; -.
UCSC; uc001aot.4; human.
CTD; 3604; -.
DisGeNET; 3604; -.
EuPathDB; HostDB:ENSG00000049249.8; -.
GeneCards; TNFRSF9; -.
HGNC; HGNC:11924; TNFRSF9.
HPA; HPA071425; -.
MIM; 602250; gene.
neXtProt; NX_Q07011; -.
OpenTargets; ENSG00000049249; -.
PharmGKB; PA36617; -.
eggNOG; ENOG410IW3N; Eukaryota.
eggNOG; ENOG41129F9; LUCA.
GeneTree; ENSGT00730000111279; -.
HOGENOM; HOG000033708; -.
HOVERGEN; HBG000021; -.
InParanoid; Q07011; -.
KO; K05146; -.
OMA; FKQPFMR; -.
OrthoDB; EOG091G03XW; -.
PhylomeDB; Q07011; -.
TreeFam; TF336151; -.
Reactome; R-HSA-5669034; TNFs bind their physiological receptors.
GeneWiki; CD137; -.
GenomeRNAi; 3604; -.
PRO; PR:Q07011; -.
Proteomes; UP000005640; Chromosome 1.
Bgee; ENSG00000049249; Expressed in 82 organ(s), highest expression level in buccal mucosa cell.
CleanEx; HS_TNFRSF9; -.
ExpressionAtlas; Q07011; baseline and differential.
Genevisible; Q07011; HS.
GO; GO:0009897; C:external side of plasma membrane; IEA:InterPro.
GO; GO:0005887; C:integral component of plasma membrane; TAS:ProtInc.
GO; GO:0005886; C:plasma membrane; TAS:Reactome.
GO; GO:0038023; F:signaling receptor activity; TAS:ProtInc.
GO; GO:0006915; P:apoptotic process; TAS:ProtInc.
GO; GO:0008285; P:negative regulation of cell proliferation; TAS:ProtInc.
GO; GO:0033209; P:tumor necrosis factor-mediated signaling pathway; TAS:Reactome.
CDD; cd13410; TNFRSF9; 1.
InterPro; IPR009030; Growth_fac_rcpt_cys_sf.
InterPro; IPR001368; TNFR/NGFR_Cys_rich_reg.
InterPro; IPR020413; TNFR_9.
InterPro; IPR034020; TNFRSF9_N.
PANTHER; PTHR23097:SF136; PTHR23097:SF136; 1.
Pfam; PF00020; TNFR_c6; 1.
PRINTS; PR01924; TNFACTORR9.
SMART; SM00208; TNFR; 2.
SUPFAM; SSF57184; SSF57184; 1.
PROSITE; PS00652; TNFR_NGFR_1; 1.
PROSITE; PS50050; TNFR_NGFR_2; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Direct protein sequencing;
Disulfide bond; Glycoprotein; Membrane; Polymorphism; Receptor;
Reference proteome; Repeat; Signal; Transmembrane;
Transmembrane helix.
SIGNAL 1 23 {ECO:0000269|PubMed:15340161}.
CHAIN 24 255 Tumor necrosis factor receptor
superfamily member 9.
/FTId=PRO_0000034577.
TOPO_DOM 24 186 Extracellular. {ECO:0000255}.
TRANSMEM 187 213 Helical. {ECO:0000255}.
TOPO_DOM 214 255 Cytoplasmic. {ECO:0000255}.
REPEAT 24 45 TNFR-Cys 1.
REPEAT 47 86 TNFR-Cys 2.
REPEAT 87 118 TNFR-Cys 3.
REPEAT 119 159 TNFR-Cys 4.
REGION 214 255 Interaction with LRR-1.
CARBOHYD 138 138 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 149 149 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 28 37 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 31 45 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 48 62 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 65 78 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 68 86 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 88 94 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 99 106 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 102 117 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 121 133 {ECO:0000255|PROSITE-ProRule:PRU00206}.
DISULFID 139 158 {ECO:0000255|PROSITE-ProRule:PRU00206}.
VARIANT 56 56 A -> T (in dbSNP:rs9657963).
{ECO:0000269|Ref.5}.
/FTId=VAR_018920.
VARIANT 115 115 K -> N (in dbSNP:rs9657965).
{ECO:0000269|Ref.5}.
/FTId=VAR_018921.
VARIANT 176 176 A -> D (in dbSNP:rs9657979).
{ECO:0000269|Ref.5}.
/FTId=VAR_018922.
VARIANT 250 250 E -> G (in a colorectal cancer sample;
somatic mutation; dbSNP:rs776878260).
{ECO:0000269|PubMed:16959974}.
/FTId=VAR_035478.
HELIX 28 30 {ECO:0000244|PDB:6BWV}.
STRAND 35 37 {ECO:0000244|PDB:6BWV}.
HELIX 39 41 {ECO:0000244|PDB:6BWV}.
STRAND 45 47 {ECO:0000244|PDB:6BWV}.
STRAND 55 57 {ECO:0000244|PDB:6BWV}.
STRAND 60 64 {ECO:0000244|PDB:6BWV}.
STRAND 72 76 {ECO:0000244|PDB:6BWV}.
STRAND 80 82 {ECO:0000244|PDB:6BWV}.
STRAND 85 88 {ECO:0000244|PDB:6BWV}.
STRAND 92 95 {ECO:0000244|PDB:6BWV}.
TURN 96 99 {ECO:0000244|PDB:6BWV}.
STRAND 101 104 {ECO:0000244|PDB:6BWV}.
STRAND 110 113 {ECO:0000244|PDB:6BWV}.
STRAND 116 119 {ECO:0000244|PDB:6BWV}.
HELIX 139 142 {ECO:0000244|PDB:6BWV}.
STRAND 145 148 {ECO:0000244|PDB:6BWV}.
STRAND 152 154 {ECO:0000244|PDB:6BWV}.
STRAND 157 159 {ECO:0000244|PDB:6BWV}.
SEQUENCE 255 AA; 27899 MW; F3A563FE5EF00460 CRC64;
MGNSCYNIVA TLLLVLNFER TRSLQDPCSN CPAGTFCDNN RNQICSPCPP NSFSSAGGQR
TCDICRQCKG VFRTRKECSS TSNAECDCTP GFHCLGAGCS MCEQDCKQGQ ELTKKGCKDC
CFGTFNDQKR GICRPWTNCS LDGKSVLVNG TKERDVVCGP SPADLSPGAS SVTPPAPARE
PGHSPQIISF FLALTSTALL FLLFFLTLRF SVVKRGRKKL LYIFKQPFMR PVQTTQEEDG
CSCRFPEEEE GGCEL


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