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Type IV pilus biogenesis factor PilY1 homolog PD_0023

 PIYH3_XYLFT             Reviewed;        1214 AA.
Q87FA5;
04-FEB-2015, integrated into UniProtKB/Swiss-Prot.
01-JUN-2003, sequence version 1.
22-NOV-2017, entry version 77.
RecName: Full=Type IV pilus biogenesis factor PilY1 homolog PD_0023 {ECO:0000250|UniProtKB:S0HPF7, ECO:0000303|PubMed:25217013};
Flags: Precursor;
Name=pilY1_3 {ECO:0000312|EMBL:AAO27930.1};
OrderedLocusNames=PD_0023 {ECO:0000312|EMBL:AAO27930.1};
Xylella fastidiosa (strain Temecula1 / ATCC 700964).
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
Xanthomonadaceae; Xylella.
NCBI_TaxID=183190 {ECO:0000312|EMBL:AAO27930.1};
[1] {ECO:0000312|EMBL:AAO27930.1, ECO:0000312|Proteomes:UP000002516}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Temecula1 / ATCC 700964 {ECO:0000312|Proteomes:UP000002516};
PubMed=12533478; DOI=10.1128/JB.185.3.1018-1026.2003;
Van Sluys M.A., de Oliveira M.C., Monteiro-Vitorello C.B.,
Miyaki C.Y., Furlan L.R., Camargo L.E.A., da Silva A.C.R., Moon D.H.,
Takita M.A., Lemos E.G.M., Machado M.A., Ferro M.I.T., da Silva F.R.,
Goldman M.H.S., Goldman G.H., Lemos M.V.F., El-Dorry H., Tsai S.M.,
Carrer H., Carraro D.M., de Oliveira R.C., Nunes L.R., Siqueira W.J.,
Coutinho L.L., Kimura E.T., Ferro E.S., Harakava R., Kuramae E.E.,
Marino C.L., Giglioti E., Abreu I.L., Alves L.M.C., do Amaral A.M.,
Baia G.S., Blanco S.R., Brito M.S., Cannavan F.S., Celestino A.V.,
da Cunha A.F., Fenille R.C., Ferro J.A., Formighieri E.F., Kishi L.T.,
Leoni S.G., Oliveira A.R., Rosa V.E. Jr., Sassaki F.T., Sena J.A.D.,
de Souza A.A., Truffi D., Tsukumo F., Yanai G.M., Zaros L.G.,
Civerolo E.L., Simpson A.J.G., Almeida N.F. Jr., Setubal J.C.,
Kitajima J.P.;
"Comparative analyses of the complete genome sequences of Pierce's
disease and citrus variegated chlorosis strains of Xylella
fastidiosa.";
J. Bacteriol. 185:1018-1026(2003).
[2]
FUNCTION, AND DISRUPTION PHENOTYPE.
STRAIN=Temecula1 / ATCC 700964 {ECO:0000303|PubMed:17693510};
PubMed=17693510; DOI=10.1128/JB.00934-07;
De La Fuente L., Burr T.J., Hoch H.C.;
"Mutations in type I and type IV pilus biosynthetic genes affect
twitching motility rates in Xylella fastidiosa.";
J. Bacteriol. 189:7507-7510(2007).
[3]
DISRUPTION PHENOTYPE.
STRAIN=Temecula1 / ATCC 700964 {ECO:0000303|PubMed:17322192};
PubMed=17322192; DOI=10.1099/mic.0.2006/002311-0;
Li Y., Hao G., Galvani C.D., Meng Y., De La Fuente L., Hoch H.C.,
Burr T.J.;
"Type I and type IV pili of Xylella fastidiosa affect twitching
motility, biofilm formation and cell-cell aggregation.";
Microbiology 153:719-726(2007).
[4]
FUNCTION, INDUCTION, AND DISRUPTION PHENOTYPE.
STRAIN=Temecula1 / ATCC 700964 {ECO:0000303|PubMed:25217013};
PubMed=25217013; DOI=10.1128/AEM.02153-14;
Cruz L.F., Parker J.K., Cobine P.A., De La Fuente L.;
"Calcium-enhanced twitching motility in Xylella fastidiosa is linked
to a single PilY1 homolog.";
Appl. Environ. Microbiol. 80:7176-7185(2014).
-!- FUNCTION: One of the three PilY1 homologs of X.fastidiosa, which
are involved in bacterial twitching motility as component of the
filamentous type IV pili (T4P). {ECO:0000269|PubMed:17693510,
ECO:0000305|PubMed:25217013}.
-!- SUBCELLULAR LOCATION: Fimbrium {ECO:0000250|UniProtKB:Q87B49}.
-!- INDUCTION: Expression is not affected by calcium.
{ECO:0000269|PubMed:25217013}.
-!- DISRUPTION PHENOTYPE: Shows twitching motility, but the speed of
the twitching movement is three times slower than wild-type on a
glass surface against the flow direction of media. Mutant cells
also move more sporadically with frequent stop intervals. Forms
T4P (PubMed:17693510,PubMed:17322192). Not impaired in attachment
to surfaces or biofilm formation (PubMed:25217013).
{ECO:0000269|PubMed:17322192, ECO:0000269|PubMed:17693510,
ECO:0000269|PubMed:25217013}.
-!- SIMILARITY: Belongs to the PilY1 family. {ECO:0000305}.
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EMBL; AE009442; AAO27930.1; -; Genomic_DNA.
RefSeq; WP_011097477.1; NC_004556.1.
SMR; Q87FA5; -.
EnsemblBacteria; AAO27930; AAO27930; PD_0023.
KEGG; xft:PD_0023; -.
KO; K02674; -.
OMA; IDPFRWA; -.
Proteomes; UP000002516; Chromosome.
GO; GO:0009289; C:pilus; IEA:UniProtKB-SubCell.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
Gene3D; 3.40.50.410; -; 1.
InterPro; IPR008707; PilC_beta_prop_dom.
InterPro; IPR011047; Quinoprotein_ADH-like_supfam.
InterPro; IPR036465; vWFA_dom_sf.
Pfam; PF05567; Neisseria_PilC; 1.
SUPFAM; SSF50998; SSF50998; 2.
2: Evidence at transcript level;
Calcium; Complete proteome; Fimbrium; Fimbrium biogenesis;
Metal-binding; Signal.
SIGNAL 1 30 {ECO:0000255}.
CHAIN 31 1214 Type IV pilus biogenesis factor PilY1
homolog PD_0023. {ECO:0000255}.
/FTId=PRO_0000431920.
METAL 952 952 Calcium. {ECO:0000250|UniProtKB:S0HPF7}.
METAL 954 954 Calcium. {ECO:0000250|UniProtKB:S0HPF7}.
METAL 956 956 Calcium; via carbonyl oxygen.
{ECO:0000250|UniProtKB:S0HPF7}.
METAL 958 958 Calcium. {ECO:0000250|UniProtKB:S0HPF7}.
SEQUENCE 1214 AA; 132880 MW; E1E8913521F98C3A CRC64;
MKKTVFNPAL NRAAAILIGT LVGISGVVHA SVDISSSPLH GGKDVPGNLA ILASVEFPTL
ISVANLADTY TPGVRYVGYF DSNKCYKYHY SSRELDRYFY PVASPRPQAN YGCNTTGGVW
AGNFLNWAAT QTIDPFRSAL TGGYRVRDTV SETILEKAVM DRDSQENFPR RNVAGRNVLA
TLVPTQWNNF RIRIDGLGNR MRFTQFSSLW TDPLNTEGQP YDSSRHPLNR NDRGVYEVSV
RVKVCDPSAG LESNCVAYPR GSYKPEGLIQ EYSKRIRYSV FGYKNDHSYL IDGGVLRARQ
KFVGPQTHYP EQGKKTNSHA EWDPQTGILY DNPDPEDAAA TTRRVGRTIA NSGVINYLNK
SGQMDTGRIS KIYDPVSELY YTAYRYFKRL GNVPEYSVLT GSVNEKYQQA DAFPVITDWD
DPIRYACQSN VVLGIGDTHT NQDKNLPGNT NTMEEPSKPQ TVRNDRSIDV VKRMAQIFRM
EGMRQQDAMT SAVAPKFNFH RYNSAYIAAL AYDAHTKDMR PDLEGDQLLT THWVDVVEAG
DYKIPISTNQ YWLAAKYGGF QVPAGYDPDK TVNPLSEATW WTNGEYVNND LKANAKRADN
FYVAADAEKM VASLKHAFSR IVAEIKGAGT GLSSNSARLE TGAVTYQAQF FSGTWRGDLI
AYHVDKVTGA LTPFWNANFP AWEQRVIKFA NATTLQDFTK KNLGQTALAS ASAQQINYLR
GDRSQEGNVP GKLRIRSGIM GDIVNSQPLY VGAPNGRLYT TANFTGASAY AAFAAQQANR
VPVVYVGAND GMLHAFDANT GKEIFAFVPR AAMPKLLEYT DQNYGHQYYV DGELTAADIY
DTKLGWRSVL VGTLGRGGKG LFALDVTDPS NIRLLWDKTS ADIGGLGNTL SKPMIAQTSD
GTWSVLLGNG PNSTADNAQL IVMNLLTGHA AQVPVSKTSN NGLSGVFPWS SQSNGITDRV
YAGDLLGTLW RFTFSDNAWK VAPLFTATYQ GKAQPISATP LGAIERSTGR MWIFFGTGRA
LSSHDMDNKE VQSWYGLIDQ GTTIPGRTRL SQVQIVDEGV VNGYAVRTVS DPKNIGTDGW
YMDLISPKSG KQGERMIVSN MFRGAALIGT TRIPDNSDIC KLSGSGFVMA INPFTGGRLG
QWFFDLNTGG GSGGALNGNP VSGVGVSSAP NSPVFTGNIM QIGADDGTVT SLKTPSSGGL
NINRVSWREI LRTE


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