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UV-stimulated scaffold protein A

 UVSSA_HUMAN             Reviewed;         709 AA.
Q2YD98; A8K9E6; B2RU11; Q8WTX4; Q9P1Z8;
05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
18-MAY-2010, sequence version 2.
27-SEP-2017, entry version 93.
RecName: Full=UV-stimulated scaffold protein A;
Name=UVSSA; Synonyms=KIAA1530;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), AND VARIANT
LEU-620.
TISSUE=Brain;
PubMed=10819331; DOI=10.1093/dnares/7.2.143;
Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O.;
"Prediction of the coding sequences of unidentified human genes. XVII.
The complete sequences of 100 new cDNA clones from brain which code
for large proteins in vitro.";
DNA Res. 7:143-150(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), AND VARIANT
LEU-620.
TISSUE=Thymus;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15815621; DOI=10.1038/nature03466;
Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H.,
Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M.,
Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E.,
Kremitzki C., Oddy L., Du H., Sun H., Bradshaw-Cordum H., Ali J.,
Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C.,
Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J.,
Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A.,
Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K.,
Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M.,
Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K.,
McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C.,
Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N.,
Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M.,
Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E.,
Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P.,
Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A.,
Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A.,
Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T.,
Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D.,
Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X.,
McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C.,
Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S.,
Miller W., Eichler E.E., Bork P., Suyama M., Torrents D.,
Waterston R.H., Wilson R.K.;
"Generation and annotation of the DNA sequences of human chromosomes 2
and 4.";
Nature 434:724-731(2005).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), AND VARIANT
LEU-620.
TISSUE=Duodenum, Lung, and Skin;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=18669648; DOI=10.1073/pnas.0805139105;
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,
Elledge S.J., Gygi S.P.;
"A quantitative atlas of mitotic phosphorylation.";
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-281 AND SER-287, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Leukemic T-cell;
PubMed=19690332; DOI=10.1126/scisignal.2000007;
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,
Rodionov V., Han D.K.;
"Quantitative phosphoproteomic analysis of T cell receptor signaling
reveals system-wide modulation of protein-protein interactions.";
Sci. Signal. 2:RA46-RA46(2009).
[7]
FUNCTION, INVOLVEMENT IN UVSS3, MUTAGENESIS OF TRP-120 AND
157-ARG--ARG-159, VARIANT UVSS3 ARG-32, AND CHARACTERIZATION OF
VARIANT UVSS3 ARG-32.
PubMed=22466610; DOI=10.1038/ng.2229;
Nakazawa Y., Sasaki K., Mitsutake N., Matsuse M., Shimada M.,
Nardo T., Takahashi Y., Ohyama K., Ito K., Mishima H., Nomura M.,
Kinoshita A., Ono S., Takenaka K., Masuyama R., Kudo T., Slor H.,
Utani A., Tateishi S., Yamashita S., Stefanini M., Lehmann A.R.,
Yoshiura K.I., Ogi T.;
"Mutations in UVSSA cause UV-sensitive syndrome and impair RNA
polymerase IIo processing in transcription-coupled nucleotide-excision
repair.";
Nat. Genet. 44:586-592(2012).
[8]
FUNCTION, INVOLVEMENT IN UVSS3, SUBCELLULAR LOCATION, UBIQUITINATION,
AND INTERACTION WITH USP7.
PubMed=22466611; DOI=10.1038/ng.2230;
Schwertman P., Lagarou A., Dekkers D.H., Raams A., van der Hoek A.C.,
Laffeber C., Hoeijmakers J.H., Demmers J.A., Fousteri M.,
Vermeulen W., Marteijn J.A.;
"UV-sensitive syndrome protein UVSSA recruits USP7 to regulate
transcription-coupled repair.";
Nat. Genet. 44:598-602(2012).
[9]
FUNCTION, INVOLVEMENT IN UVSS3, SUBCELLULAR LOCATION, AND INTERACTION
WITH ERCC6; ERCC8 AND USP7.
PubMed=22466612; DOI=10.1038/ng.2228;
Zhang X., Horibata K., Saijo M., Ishigami C., Ukai A., Kanno S.I.,
Tahara H., Neilan E.G., Honma M., Nohmi T., Yasui A., Tanaka K.;
"Mutations in UVSSA cause UV-sensitive syndrome and destabilize ERCC6
in transcription-coupled DNA repair.";
Nat. Genet. 44:593-597(2012).
[10]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Erythroleukemia;
PubMed=23186163; DOI=10.1021/pr300630k;
Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
Mohammed S.;
"Toward a comprehensive characterization of a human cancer cell
phosphoproteome.";
J. Proteome Res. 12:260-271(2013).
[11]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014;
Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D.,
Wang L., Ye M., Zou H.;
"An enzyme assisted RP-RPLC approach for in-depth analysis of human
liver phosphoproteome.";
J. Proteomics 96:253-262(2014).
-!- FUNCTION: Factor involved in transcription-coupled nucleotide
excision repair (TC-NER) in response to UV damage. TC-NER allows
RNA polymerase II-blocking lesions to be rapidly removed from the
transcribed strand of active genes. Acts by promoting
stabilization of ERCC6 by recruiting deubiquitinating enzyme USP7
to TC-NER complexes, preventing UV-induced degradation of ERCC6 by
the proteasome. Interacts with the elongating form of RNA
polymerase II (RNA pol IIo) and facilitates its ubiquitination at
UV damage sites, leading to promote RNA pol IIo backtracking to
allow access to the nucleotide excision repair machinery. Not
involved in processing oxidative damage.
{ECO:0000269|PubMed:22466610, ECO:0000269|PubMed:22466611,
ECO:0000269|PubMed:22466612}.
-!- SUBUNIT: Interacts with the elongating form of RNA polymerase II
(RNA pol IIo). Interacts with ERCC6, ERCC8 and USP7.
{ECO:0000269|PubMed:22466611, ECO:0000269|PubMed:22466612}.
-!- INTERACTION:
O00505:KPNA3; NbExp=4; IntAct=EBI-11153331, EBI-358297;
-!- SUBCELLULAR LOCATION: Chromosome {ECO:0000269|PubMed:22466611,
ECO:0000269|PubMed:22466612}. Note=Accumulates at UV DNA damage
sites.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q2YD98-1; Sequence=Displayed;
Name=2;
IsoId=Q2YD98-2; Sequence=VSP_030932;
-!- PTM: Monoubiquitinated: ubiquitination does not increase in
response to UV. {ECO:0000269|PubMed:22466611}.
-!- DISEASE: UV-sensitive syndrome 3 (UVSS3) [MIM:614640]: An
autosomal recessive disorder characterized by cutaneous
photosensitivity and slight dyspigmentation, without an increased
risk of skin tumors. {ECO:0000269|PubMed:22466610,
ECO:0000269|PubMed:22466611, ECO:0000269|PubMed:22466612}.
Note=The disease is caused by mutations affecting the gene
represented in this entry.
-!- SIMILARITY: Belongs to the UVSSA family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=BAA96054.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AB040963; BAA96054.1; ALT_INIT; mRNA.
EMBL; AK292661; BAF85350.1; -; mRNA.
EMBL; AC078852; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AC118281; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC021930; AAH21930.1; -; mRNA.
EMBL; BC110331; AAI10332.1; -; mRNA.
EMBL; BC140901; AAI40902.1; -; mRNA.
CCDS; CCDS33938.1; -. [Q2YD98-1]
RefSeq; NP_001304863.1; NM_001317934.1. [Q2YD98-1]
RefSeq; NP_001304864.1; NM_001317935.1. [Q2YD98-1]
RefSeq; NP_065945.2; NM_020894.3. [Q2YD98-1]
RefSeq; XP_016863979.1; XM_017008490.1. [Q2YD98-1]
RefSeq; XP_016863980.1; XM_017008491.1. [Q2YD98-1]
RefSeq; XP_016863981.1; XM_017008492.1. [Q2YD98-1]
RefSeq; XP_016863982.1; XM_017008493.1. [Q2YD98-1]
RefSeq; XP_016863983.1; XM_017008494.1. [Q2YD98-1]
UniGene; Hs.380475; -.
UniGene; Hs.744620; -.
ProteinModelPortal; Q2YD98; -.
SMR; Q2YD98; -.
BioGrid; 121689; 11.
IntAct; Q2YD98; 5.
STRING; 9606.ENSP00000374501; -.
iPTMnet; Q2YD98; -.
PhosphoSitePlus; Q2YD98; -.
BioMuta; UVSSA; -.
DMDM; 296434546; -.
EPD; Q2YD98; -.
MaxQB; Q2YD98; -.
PaxDb; Q2YD98; -.
PeptideAtlas; Q2YD98; -.
PRIDE; Q2YD98; -.
Ensembl; ENST00000389851; ENSP00000374501; ENSG00000163945. [Q2YD98-1]
Ensembl; ENST00000507531; ENSP00000421741; ENSG00000163945. [Q2YD98-1]
Ensembl; ENST00000511216; ENSP00000425130; ENSG00000163945. [Q2YD98-1]
Ensembl; ENST00000511563; ENSP00000423340; ENSG00000163945. [Q2YD98-2]
Ensembl; ENST00000512728; ENSP00000427701; ENSG00000163945. [Q2YD98-2]
GeneID; 57654; -.
KEGG; hsa:57654; -.
UCSC; uc003gde.5; human. [Q2YD98-1]
CTD; 57654; -.
DisGeNET; 57654; -.
EuPathDB; HostDB:ENSG00000163945.15; -.
GeneCards; UVSSA; -.
HGNC; HGNC:29304; UVSSA.
HPA; HPA050824; -.
HPA; HPA053496; -.
MalaCards; UVSSA; -.
MIM; 614632; gene.
MIM; 614640; phenotype.
neXtProt; NX_Q2YD98; -.
OpenTargets; ENSG00000163945; -.
Orphanet; 178338; UV-sensitive syndrome.
PharmGKB; PA162393105; -.
eggNOG; KOG2374; Eukaryota.
eggNOG; ENOG410XP15; LUCA.
GeneTree; ENSGT00390000000377; -.
HOGENOM; HOG000060117; -.
HOVERGEN; HBG076421; -.
InParanoid; Q2YD98; -.
OMA; YEPHIPD; -.
OrthoDB; EOG091G054F; -.
PhylomeDB; Q2YD98; -.
TreeFam; TF321660; -.
Reactome; R-HSA-6781823; Formation of TC-NER Pre-Incision Complex.
Reactome; R-HSA-6781827; Transcription-Coupled Nucleotide Excision Repair (TC-NER).
Reactome; R-HSA-6782135; Dual incision in TC-NER.
Reactome; R-HSA-6782210; Gap-filling DNA repair synthesis and ligation in TC-NER.
GeneWiki; KIAA1530; -.
GenomeRNAi; 57654; -.
PRO; PR:Q2YD98; -.
Proteomes; UP000005640; Chromosome 4.
Bgee; ENSG00000163945; -.
CleanEx; HS_KIAA1530; -.
ExpressionAtlas; Q2YD98; baseline and differential.
Genevisible; Q2YD98; HS.
GO; GO:0005694; C:chromosome; IDA:UniProtKB.
GO; GO:0005654; C:nucleoplasm; TAS:Reactome.
GO; GO:0000993; F:RNA polymerase II core binding; IDA:UniProtKB.
GO; GO:0016567; P:protein ubiquitination; IMP:UniProtKB.
GO; GO:0009411; P:response to UV; IMP:UniProtKB.
GO; GO:0006283; P:transcription-coupled nucleotide-excision repair; IMP:UniProtKB.
Gene3D; 1.25.40.90; -; 1.
InterPro; IPR018610; DUF2043.
InterPro; IPR008942; ENTH_VHS.
Pfam; PF09740; DUF2043; 1.
1: Evidence at protein level;
Alternative splicing; Chromosome; Coiled coil; Complete proteome;
Disease mutation; DNA damage; DNA repair; Phosphoprotein;
Polymorphism; Reference proteome; Ubl conjugation.
CHAIN 1 709 UV-stimulated scaffold protein A.
/FTId=PRO_0000317282.
REGION 2 145 VHS-like.
COILED 165 199 {ECO:0000255}.
MOD_RES 281 281 Phosphoserine.
{ECO:0000244|PubMed:19690332}.
MOD_RES 287 287 Phosphoserine.
{ECO:0000244|PubMed:19690332}.
VAR_SEQ 1 449 Missing (in isoform 2).
{ECO:0000303|PubMed:14702039,
ECO:0000303|PubMed:15489334}.
/FTId=VSP_030932.
VARIANT 32 32 C -> R (in UVSS3; mild phenotype; impairs
transcription-coupled nucleotide excision
repair ability; dbSNP:rs387907164).
{ECO:0000269|PubMed:22466610}.
/FTId=VAR_067798.
VARIANT 391 391 R -> H (in dbSNP:rs2276904).
/FTId=VAR_038499.
VARIANT 620 620 P -> L (in dbSNP:rs28522910).
{ECO:0000269|PubMed:10819331,
ECO:0000269|PubMed:14702039,
ECO:0000269|PubMed:15489334}.
/FTId=VAR_038500.
MUTAGEN 120 120 W->A: Impairs transcription-coupled
nucleotide excision repair ability.
{ECO:0000269|PubMed:22466610}.
MUTAGEN 157 159 RKR->EEE: Impairs transcription-coupled
nucleotide excision repair ability.
{ECO:0000269|PubMed:22466610}.
SEQUENCE 709 AA; 80591 MW; 34698BE37A43BF2F CRC64;
MDQKLSKLVE ELTTSGEPRL NPEKMKELKK ICKSSEEQLS RAYRLLIAQL TQEHAEIRLS
AFQIVEELFV RSHQFRMLVV SNFQEFLELT LGTDPAQPLP PPREAAQRLR QATTRAVEGW
NEKFGEAYKK LALGYHFLRH NKKVDFQDTN ARSLAERKRE EEKQKHLDKI YQERASQAER
EMQEMSGEIE SCLTEVESCF RLLVPFDFDP NPETESLGMA SGMSDALRSS CAGQVGPCRS
GTPDPRDGEQ PCCSRDLPAS AGHPRAGGGA QPSQTATGDP SDEDEDSDLE EFVRSHGLGS
HKYTLDVELC SEGLKVQENE DNLALIHAAR DTLKLIRNKF LPAVCSWIQR FTRVGTHGGC
LKRAIDLKAE LELVLRKYKE LDIEPEGGER RRTEALGDAE EDEDDEDFVE VPEKEGYEPH
IPDHLRPEYG LEAAPEKDTV VRCLRTRTRM DEEVSDPTSA AAQLRQLRDH LPPPSSASPS
RALPEPQEAQ KLAAERARAP VVPYGVDLHY WGQELPTAGK IVKSDSQHRF WKPSEVEEEV
VNADISEMLR SRHITFAGKF EPVQHWCRAP RPDGRLCERQ DRLKCPFHGK IVPRDDEGRP
LDPEDRAREQ RRQLQKQERP EWQDPELMRD VEAATGQDLG SSRYSGKGRG KKRRYPSLTN
LKAQADTARA RIGRKVFAKA AVRRVVAAMN RMDQKKHEKF SNQFNYALN


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