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Ubiquitin domain-containing protein 2 (Dendritic cell-derived ubiquitin-like protein) (DC-UbP) (Ubiquitin-like protein SB72)

 UBTD2_HUMAN             Reviewed;         234 AA.
Q8WUN7; Q8TDQ3;
27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
27-JUN-2006, sequence version 2.
22-NOV-2017, entry version 119.
RecName: Full=Ubiquitin domain-containing protein 2;
AltName: Full=Dendritic cell-derived ubiquitin-like protein;
Short=DC-UbP;
AltName: Full=Ubiquitin-like protein SB72;
Name=UBTD2; Synonyms=DCUBP; ORFNames=SB72;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15372022; DOI=10.1038/nature02919;
Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S.,
Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M.,
She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S.,
Branscomb E., Caoile C., Challacombe J.F., Chan Y.M., Denys M.,
Detter J.C., Escobar J., Flowers D., Fotopulos D., Glavina T.,
Gomez M., Gonzales E., Goodstein D., Grigoriev I., Groza M.,
Hammon N., Hawkins T., Haydu L., Israni S., Jett J., Kadner K.,
Kimball H., Kobayashi A., Lopez F., Lou Y., Martinez D., Medina C.,
Morgan J., Nandkeshwar R., Noonan J.P., Pitluck S., Pollard M.,
Predki P., Priest J., Ramirez L., Retterer J., Rodriguez A.,
Rogers S., Salamov A., Salazar A., Thayer N., Tice H., Tsai M.,
Ustaszewska A., Vo N., Wheeler J., Wu K., Yang J., Dickson M.,
Cheng J.-F., Eichler E.E., Olsen A., Pennacchio L.A., Rokhsar D.S.,
Richardson P., Lucas S.M., Myers R.M., Rubin E.M.;
"The DNA sequence and comparative analysis of human chromosome 5.";
Nature 431:268-274(2004).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 10-234.
TISSUE=Mammary gland;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 122-234, SUBCELLULAR LOCATION, AND
TISSUE SPECIFICITY.
TISSUE=Dendritic cell;
PubMed=12507522; DOI=10.1016/S0006-291X(02)02913-3;
Liu S., An H., Li N., Yu Y., Lin N., Wan T., Zhang M., Wang W.,
Cao X.;
"Cloning and identification of a novel human ubiquitin-like protein,
DC-UbP, from dendritic cells.";
Biochem. Biophys. Res. Commun. 300:800-805(2003).
[4]
STRUCTURE BY NMR OF 129-234.
PubMed=15987890; DOI=10.1110/ps.051455505;
Gao Y.-G., Song A.-X., Shi Y.-H., Chang Y.-G., Liu S.-X., Yu Y.-Z.,
Cao X.-T., Lin D.-H., Hu H.-Y.;
"Solution structure of the ubiquitin-like domain of human DC-UbP from
dendritic cells.";
Protein Sci. 14:2044-2050(2005).
-!- INTERACTION:
Q96RU7:TRIB3; NbExp=4; IntAct=EBI-12867288, EBI-492476;
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:12507522}.
-!- TISSUE SPECIFICITY: Detected in dendritic cells. Highly expressed
in tumor cell lines, but not detectable in most tissues.
{ECO:0000269|PubMed:12507522}.
-!- SEQUENCE CAUTION:
Sequence=AAH19910.1; Type=Erroneous initiation; Evidence={ECO:0000305};
Sequence=AAL99389.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AC008671; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AC024561; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC019910; AAH19910.1; ALT_INIT; mRNA.
EMBL; AF251700; AAL99389.1; ALT_INIT; mRNA.
CCDS; CCDS4379.2; -.
RefSeq; NP_689490.2; NM_152277.2.
RefSeq; XP_016865511.1; XM_017010022.1.
RefSeq; XP_016865512.1; XM_017010023.1.
UniGene; Hs.131570; -.
PDB; 1TTN; NMR; -; A=129-234.
PDB; 2KSN; NMR; -; A=14-141.
PDBsum; 1TTN; -.
PDBsum; 2KSN; -.
ProteinModelPortal; Q8WUN7; -.
SMR; Q8WUN7; -.
BioGrid; 124917; 13.
IntAct; Q8WUN7; 9.
STRING; 9606.ENSP00000377381; -.
iPTMnet; Q8WUN7; -.
PhosphoSitePlus; Q8WUN7; -.
SwissPalm; Q8WUN7; -.
BioMuta; UBTD2; -.
DMDM; 109896149; -.
EPD; Q8WUN7; -.
MaxQB; Q8WUN7; -.
PaxDb; Q8WUN7; -.
PeptideAtlas; Q8WUN7; -.
PRIDE; Q8WUN7; -.
DNASU; 92181; -.
Ensembl; ENST00000393792; ENSP00000377381; ENSG00000168246.
GeneID; 92181; -.
KEGG; hsa:92181; -.
UCSC; uc003mbp.2; human.
CTD; 92181; -.
EuPathDB; HostDB:ENSG00000168246.5; -.
GeneCards; UBTD2; -.
HGNC; HGNC:24463; UBTD2.
HPA; HPA035891; -.
HPA; HPA035892; -.
MIM; 610174; gene.
neXtProt; NX_Q8WUN7; -.
OpenTargets; ENSG00000168246; -.
PharmGKB; PA162408325; -.
eggNOG; KOG0013; Eukaryota.
eggNOG; ENOG410XRPV; LUCA.
GeneTree; ENSGT00390000006816; -.
HOGENOM; HOG000231205; -.
HOVERGEN; HBG080179; -.
InParanoid; Q8WUN7; -.
OMA; GHECQLR; -.
OrthoDB; EOG091G0FKF; -.
PhylomeDB; Q8WUN7; -.
TreeFam; TF323925; -.
ChiTaRS; UBTD2; human.
EvolutionaryTrace; Q8WUN7; -.
GenomeRNAi; 92181; -.
PRO; PR:Q8WUN7; -.
Proteomes; UP000005640; Chromosome 5.
Bgee; ENSG00000168246; -.
CleanEx; HS_UBTD2; -.
Genevisible; Q8WUN7; HS.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0043130; F:ubiquitin binding; IEA:InterPro.
InterPro; IPR032752; UBD.
InterPro; IPR029071; Ubiquitin-like_domsf.
InterPro; IPR000626; Ubiquitin_dom.
Pfam; PF16455; UBD; 1.
Pfam; PF00240; ubiquitin; 1.
SUPFAM; SSF54236; SSF54236; 1.
PROSITE; PS50053; UBIQUITIN_2; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Cytoplasm; Polymorphism;
Reference proteome.
CHAIN 1 234 Ubiquitin domain-containing protein 2.
/FTId=PRO_0000244332.
DOMAIN 152 227 Ubiquitin-like. {ECO:0000255|PROSITE-
ProRule:PRU00214}.
VARIANT 129 129 M -> I (in dbSNP:rs17074452).
/FTId=VAR_052694.
STRAND 21 23 {ECO:0000244|PDB:2KSN}.
HELIX 47 58 {ECO:0000244|PDB:2KSN}.
HELIX 68 82 {ECO:0000244|PDB:2KSN}.
HELIX 86 96 {ECO:0000244|PDB:2KSN}.
STRAND 105 110 {ECO:0000244|PDB:2KSN}.
TURN 111 113 {ECO:0000244|PDB:2KSN}.
STRAND 114 117 {ECO:0000244|PDB:2KSN}.
HELIX 120 122 {ECO:0000244|PDB:2KSN}.
TURN 127 129 {ECO:0000244|PDB:2KSN}.
TURN 133 135 {ECO:0000244|PDB:2KSN}.
STRAND 151 158 {ECO:0000244|PDB:1TTN}.
TURN 159 161 {ECO:0000244|PDB:1TTN}.
STRAND 162 168 {ECO:0000244|PDB:1TTN}.
HELIX 173 183 {ECO:0000244|PDB:1TTN}.
STRAND 193 196 {ECO:0000244|PDB:1TTN}.
HELIX 206 209 {ECO:0000244|PDB:1TTN}.
STRAND 213 215 {ECO:0000244|PDB:1TTN}.
STRAND 217 221 {ECO:0000244|PDB:1TTN}.
SEQUENCE 234 AA; 26190 MW; 9FB195CDDE83583E CRC64;
MGGCVGAQHD SSGSLNENSE GTGVALGRNQ PLKKEKPKWK SDYPMTDGQL RSKRDEFWDT
APAFEGRKEI WDALKAAAHA FESNDHELAQ AIIDGANITL PHGALTECYD ELGNRYQLPV
YCLAPPINMI EEKSDIETLD IPEPPPNSGY ECQLRLRLST GKDLKLVVRS TDTVFHMKRR
LHAAEGVEPG SQRWFFSGRP LTDKMKFEEL KIPKDYVVQV IVSQPVQNPT PVEN


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