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Ubiquitin-like protein 7 (Bone marrow stromal cell ubiquitin-like protein) (BMSC-UbP) (Ubiquitin-like protein SB132)

 UBL7_HUMAN              Reviewed;         380 AA.
Q96S82; D3DW57; Q96I03;
29-MAR-2004, integrated into UniProtKB/Swiss-Prot.
29-MAR-2004, sequence version 2.
30-AUG-2017, entry version 137.
RecName: Full=Ubiquitin-like protein 7;
AltName: Full=Bone marrow stromal cell ubiquitin-like protein;
Short=BMSC-UbP;
AltName: Full=Ubiquitin-like protein SB132;
Name=UBL7; Synonyms=BMSCUBP; ORFNames=SB132;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
TISSUE=Bone marrow stroma;
PubMed=12644319; DOI=10.1016/S0165-2478(03)00004-X;
Liu S., Yu Y., An H., Li N., Lin N., Wang W., Zhang W., Wan T.,
Cao X.;
"Cloning and identification of a novel ubiquitin-like protein, BMSC-
UbP, from human bone marrow stromal cells.";
Immunol. Lett. 86:169-175(2003).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Eye, Muscle, and Uterus;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=17081983; DOI=10.1016/j.cell.2006.09.026;
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,
Mann M.;
"Global, in vivo, and site-specific phosphorylation dynamics in
signaling networks.";
Cell 127:635-648(2006).
[5]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=18220336; DOI=10.1021/pr0705441;
Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,
Yates J.R. III;
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT for
efficient phosphoproteomic analysis.";
J. Proteome Res. 7:1346-1351(2008).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=18669648; DOI=10.1073/pnas.0805139105;
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,
Elledge S.J., Gygi S.P.;
"A quantitative atlas of mitotic phosphorylation.";
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Leukemic T-cell;
PubMed=19690332; DOI=10.1126/scisignal.2000007;
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,
Rodionov V., Han D.K.;
"Quantitative phosphoproteomic analysis of T cell receptor signaling
reveals system-wide modulation of protein-protein interactions.";
Sci. Signal. 2:RA46-RA46(2009).
[8]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=20068231; DOI=10.1126/scisignal.2000475;
Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L.,
Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S.,
Mann M.;
"Quantitative phosphoproteomics reveals widespread full
phosphorylation site occupancy during mitosis.";
Sci. Signal. 3:RA3-RA3(2010).
[9]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21269460; DOI=10.1186/1752-0509-5-17;
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P.,
Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.;
"Initial characterization of the human central proteome.";
BMC Syst. Biol. 5:17-17(2011).
[10]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21406692; DOI=10.1126/scisignal.2001570;
Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J.,
Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V.,
Blagoev B.;
"System-wide temporal characterization of the proteome and
phosphoproteome of human embryonic stem cell differentiation.";
Sci. Signal. 4:RS3-RS3(2011).
[11]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma, and Erythroleukemia;
PubMed=23186163; DOI=10.1021/pr300630k;
Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
Mohammed S.;
"Toward a comprehensive characterization of a human cancer cell
phosphoproteome.";
J. Proteome Res. 12:260-271(2013).
[12]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014;
Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D.,
Wang L., Ye M., Zou H.;
"An enzyme assisted RP-RPLC approach for in-depth analysis of human
liver phosphoproteome.";
J. Proteomics 96:253-262(2014).
[13]
STRUCTURE BY NMR OF 292-380 IN COMPLEX WITH UBIQUITIN.
PubMed=16731964; DOI=10.1110/ps.051995006;
Chang Y.G., Song A.X., Gao Y.G., Shi Y.H., Lin X.J., Cao X.T.,
Lin D.H., Hu H.Y.;
"Solution structure of the ubiquitin-associated domain of human BMSC-
UbP and its complex with ubiquitin.";
Protein Sci. 15:1248-1259(2006).
-!- SUBUNIT: Binds ubiquitin. {ECO:0000269|PubMed:16731964}.
-!- INTERACTION:
O43747-2:AP1G1; NbExp=7; IntAct=EBI-348604, EBI-10185819;
Q7Z479:CAPN7; NbExp=3; IntAct=EBI-348604, EBI-10213454;
P07992:ERCC1; NbExp=4; IntAct=EBI-348604, EBI-750962;
P07992-3:ERCC1; NbExp=3; IntAct=EBI-348604, EBI-12699417;
P61758:VBP1; NbExp=5; IntAct=EBI-348604, EBI-357430;
-!- TISSUE SPECIFICITY: Ubiquitous. Highly expressed in heart,
skeletal muscle, testis, thyroid and adrenal gland.
{ECO:0000269|PubMed:12644319}.
-!- INDUCTION: Down-regulated by phorbol myristate acetate (PMA) in
bone marrow stroma cells.
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EMBL; AY037166; AAK67643.1; -; mRNA.
EMBL; CH471136; EAW99332.1; -; Genomic_DNA.
EMBL; CH471136; EAW99335.1; -; Genomic_DNA.
EMBL; CH471136; EAW99339.1; -; Genomic_DNA.
EMBL; BC007913; AAH07913.1; -; mRNA.
EMBL; BC030055; AAH30055.1; -; mRNA.
EMBL; BC033919; AAH33919.1; -; mRNA.
CCDS; CCDS10263.1; -.
RefSeq; NP_001273668.1; NM_001286739.1.
RefSeq; NP_001273669.1; NM_001286740.1.
RefSeq; NP_001273670.1; NM_001286741.1.
RefSeq; NP_001273671.1; NM_001286742.1.
RefSeq; NP_116296.1; NM_032907.4.
RefSeq; NP_957717.1; NM_201265.1.
UniGene; Hs.334713; -.
PDB; 2CWB; NMR; -; A=336-380.
PDB; 2DEN; NMR; -; A=336-380.
PDBsum; 2CWB; -.
PDBsum; 2DEN; -.
ProteinModelPortal; Q96S82; -.
SMR; Q96S82; -.
BioGrid; 124418; 47.
IntAct; Q96S82; 10.
MINT; MINT-1034167; -.
STRING; 9606.ENSP00000354883; -.
iPTMnet; Q96S82; -.
PhosphoSitePlus; Q96S82; -.
BioMuta; UBL7; -.
DMDM; 48474599; -.
EPD; Q96S82; -.
MaxQB; Q96S82; -.
PaxDb; Q96S82; -.
PeptideAtlas; Q96S82; -.
PRIDE; Q96S82; -.
DNASU; 84993; -.
Ensembl; ENST00000361351; ENSP00000354883; ENSG00000138629.
Ensembl; ENST00000395081; ENSP00000378518; ENSG00000138629.
Ensembl; ENST00000564488; ENSP00000454828; ENSG00000138629.
Ensembl; ENST00000565335; ENSP00000457708; ENSG00000138629.
Ensembl; ENST00000567435; ENSP00000457703; ENSG00000138629.
GeneID; 84993; -.
KEGG; hsa:84993; -.
UCSC; uc002axw.3; human.
CTD; 84993; -.
DisGeNET; 84993; -.
GeneCards; UBL7; -.
HGNC; HGNC:28221; UBL7.
HPA; HPA040423; -.
HPA; HPA041897; -.
MIM; 609748; gene.
neXtProt; NX_Q96S82; -.
OpenTargets; ENSG00000138629; -.
PharmGKB; PA142670645; -.
eggNOG; ENOG410ISS5; Eukaryota.
eggNOG; ENOG410YUJQ; LUCA.
GeneTree; ENSGT00390000015967; -.
HOVERGEN; HBG054051; -.
InParanoid; Q96S82; -.
OMA; HAINLLM; -.
OrthoDB; EOG091G0II5; -.
PhylomeDB; Q96S82; -.
TreeFam; TF327176; -.
ChiTaRS; UBL7; human.
EvolutionaryTrace; Q96S82; -.
GenomeRNAi; 84993; -.
PRO; PR:Q96S82; -.
Proteomes; UP000005640; Chromosome 15.
Bgee; ENSG00000138629; -.
CleanEx; HS_UBL7; -.
ExpressionAtlas; Q96S82; baseline and differential.
Genevisible; Q96S82; HS.
InterPro; IPR015940; UBA.
InterPro; IPR009060; UBA-like.
InterPro; IPR015496; Ubiquilin.
InterPro; IPR029071; Ubiquitin-rel_dom.
InterPro; IPR000626; Ubiquitin_dom.
PANTHER; PTHR10677; PTHR10677; 1.
Pfam; PF00627; UBA; 1.
Pfam; PF00240; ubiquitin; 1.
SMART; SM00165; UBA; 1.
SMART; SM00213; UBQ; 1.
SUPFAM; SSF46934; SSF46934; 1.
SUPFAM; SSF54236; SSF54236; 1.
PROSITE; PS50030; UBA; 1.
PROSITE; PS50053; UBIQUITIN_2; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Phosphoprotein; Reference proteome;
Ubl conjugation pathway.
CHAIN 1 380 Ubiquitin-like protein 7.
/FTId=PRO_0000211021.
DOMAIN 18 98 Ubiquitin-like. {ECO:0000255|PROSITE-
ProRule:PRU00214}.
DOMAIN 333 377 UBA. {ECO:0000255|PROSITE-
ProRule:PRU00212}.
MOD_RES 230 230 Phosphoserine.
{ECO:0000244|PubMed:17081983,
ECO:0000244|PubMed:18220336,
ECO:0000244|PubMed:18669648,
ECO:0000244|PubMed:19690332,
ECO:0000244|PubMed:20068231,
ECO:0000244|PubMed:21406692,
ECO:0000244|PubMed:23186163,
ECO:0000244|PubMed:24275569}.
CONFLICT 262 262 A -> V (in Ref. 1; AAK67643).
{ECO:0000305}.
CONFLICT 272 272 L -> R (in Ref. 1; AAK67643).
{ECO:0000305}.
HELIX 339 346 {ECO:0000244|PDB:2CWB}.
TURN 347 349 {ECO:0000244|PDB:2CWB}.
HELIX 353 363 {ECO:0000244|PDB:2CWB}.
HELIX 367 376 {ECO:0000244|PDB:2CWB}.
SEQUENCE 380 AA; 40510 MW; 0B64DF79597E0931 CRC64;
MSLSDWHLAV KLADQPLTPK SILRLPETEL GEYSLGGYSI SFLKQLIAGK LQESVPDPEL
IDLIYCGRKL KDDQTLDFYG IQPGSTVHVL RKSWPEPDQK PEPVDKVAAM REFRVLHTAL
HSSSSYREAV FKMLSNKESL DQIIVATPGL SSDPIALGVL QDKDLFSVFA DPNMLDTLVP
AHPALVNAIV LVLHSVAGSA PMPGTDSSSR SMPSSSYRDM PGGFLFEGLS DDEDDFHPNT
RSTPSSSTPS SRPASLGYSG AAGPRPITQS ELATALALAS TPESSSHTPT PGTQGHSSGT
SPMSSGVQSG TPITNDLFSQ ALQHALQASG QPSLQSQWQP QLQQLRDMGI QDDELSLRAL
QATGGDIQAA LELIFAGGAP


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