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Uncharacterized fimbrial-like protein YadC

 YADC_ECOLI              Reviewed;         412 AA.
P31058;
01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
01-JUN-1994, sequence version 2.
22-NOV-2017, entry version 122.
RecName: Full=Uncharacterized fimbrial-like protein YadC;
Flags: Precursor;
Name=yadC; OrderedLocusNames=b0135, JW0131;
Escherichia coli (strain K12).
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
NCBI_TaxID=83333;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
PubMed=8202364; DOI=10.1093/nar/22.9.1637;
Fujita N., Mori H., Yura T., Ishihama A.;
"Systematic sequencing of the Escherichia coli genome: analysis of the
2.4-4.1 min (110,917-193,643 bp) region.";
Nucleic Acids Res. 22:1637-1639(1994).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
PubMed=9278503; DOI=10.1126/science.277.5331.1453;
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J.,
Mau B., Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1462(1997).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
PubMed=16738553; DOI=10.1038/msb4100049;
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains
MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 196-412.
STRAIN=K12;
PubMed=8096212; DOI=10.1128/jb.175.7.2125-2130.1993;
Jones C.E., Brook J.M., Buck D., Abell C., Smith A.G.;
"Cloning and sequencing of the Escherichia coli panB gene, which
encodes ketopantoate hydroxymethyltransferase, and overexpression of
the enzyme.";
J. Bacteriol. 175:2125-2130(1993).
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 354-412.
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
Merkel W.K., Nichols B.P.;
"Nucleotide sequence of the Escherichia coli panBCD gene cluster.";
Submitted (JUN-1993) to the EMBL/GenBank/DDBJ databases.
[6]
FUNCTION, INDUCTION, AND DISRUPTION PHENOTYPE.
STRAIN=K12 / MG1655 / ATCC 47076;
PubMed=20345943; DOI=10.1111/j.1462-2920.2010.02202.x;
Korea C.G., Badouraly R., Prevost M.C., Ghigo J.M., Beloin C.;
"Escherichia coli K-12 possesses multiple cryptic but functional
chaperone-usher fimbriae with distinct surface specificities.";
Environ. Microbiol. 12:1957-1977(2010).
-!- FUNCTION: Part of the yadCKLM-htrE-yadVN fimbrial operon. Could
contribute to adhesion to various surfaces in specific
environmental niches. {ECO:0000269|PubMed:20345943}.
-!- SUBCELLULAR LOCATION: Fimbrium {ECO:0000305}.
-!- INDUCTION: Repressed by H-NS. {ECO:0000269|PubMed:20345943}.
-!- DISRUPTION PHENOTYPE: Deletion of the operon under classical
laboratory conditions does not result in any major effect on
E.coli capacity to form biofilms compared with the wild-type
strain. {ECO:0000269|PubMed:20345943}.
-!- MISCELLANEOUS: The operon is cryptic under classical laboratory
conditions, but is functional when constitutively expressed.
{ECO:0000305|PubMed:20345943}.
-!- SIMILARITY: Belongs to the fimbrial protein family. {ECO:0000305}.
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EMBL; U00096; AAC73246.1; -; Genomic_DNA.
EMBL; AP009048; BAB96712.1; -; Genomic_DNA.
EMBL; X65538; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; L17086; -; NOT_ANNOTATED_CDS; Genomic_DNA.
PIR; G64736; G64736.
RefSeq; NP_414677.1; NC_000913.3.
RefSeq; WP_000848455.1; NZ_LN832404.1.
ProteinModelPortal; P31058; -.
SMR; P31058; -.
BioGrid; 4262206; 8.
DIP; DIP-11181N; -.
STRING; 316385.ECDH10B_0115; -.
PaxDb; P31058; -.
PRIDE; P31058; -.
EnsemblBacteria; AAC73246; AAC73246; b0135.
EnsemblBacteria; BAB96712; BAB96712; BAB96712.
GeneID; 944837; -.
KEGG; ecj:JW0131; -.
KEGG; eco:b0135; -.
PATRIC; fig|1411691.4.peg.2146; -.
EchoBASE; EB1629; -.
EcoGene; EG11678; yadC.
eggNOG; ENOG4105P0Q; Bacteria.
eggNOG; ENOG4111X8M; LUCA.
HOGENOM; HOG000116867; -.
BioCyc; EcoCyc:EG11678-MONOMER; -.
PRO; PR:P31058; -.
Proteomes; UP000000318; Chromosome.
Proteomes; UP000000625; Chromosome.
GO; GO:0009289; C:pilus; IMP:EcoCyc.
GO; GO:0007155; P:cell adhesion; IMP:EcoCyc.
GO; GO:0043709; P:cell adhesion involved in single-species biofilm formation; IMP:EcoCyc.
GO; GO:0006974; P:cellular response to DNA damage stimulus; IMP:EcoCyc.
GO; GO:0046677; P:response to antibiotic; IMP:EcoCyc.
Gene3D; 2.60.40.1090; -; 1.
InterPro; IPR000259; Adhesion_dom_fimbrial.
InterPro; IPR036937; Adhesion_dom_fimbrial_sf.
InterPro; IPR008966; Adhesion_dom_sf.
InterPro; IPR017014; Fimbrial-like_YadC.
Pfam; PF00419; Fimbrial; 1.
PIRSF; PIRSF033053; UCP033503_fimbr; 1.
SUPFAM; SSF49401; SSF49401; 1.
2: Evidence at transcript level;
Complete proteome; Fimbrium; Reference proteome; Signal.
SIGNAL 1 22 {ECO:0000255}.
CHAIN 23 412 Uncharacterized fimbrial-like protein
YadC.
/FTId=PRO_0000009253.
CONFLICT 206 207 LN -> VT (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 210 211 VQ -> IK (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 226 245 SPGTKVVDHSNHIYVNFTLN -> GAGQGINEHSYFIKIDF
DLL (in Ref. 4; X65538). {ECO:0000305}.
CONFLICT 251 251 L -> N (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 257 262 SILTGP -> AMLSGT (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 265 265 N -> T (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 270 270 R -> K (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 276 280 SGTIK -> AEQKR (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 284 284 S -> T (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 296 296 I -> V (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 299 299 R -> T (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 307 308 TG -> ST (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 313 315 QNT -> ETG (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 325 326 ST -> ND (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 353 353 T -> S (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 358 358 I -> K (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 361 363 ETE -> DPRGK (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 367 368 SD -> TG (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 373 380 NQGNGTSQ -> DQDTGITY (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 389 389 K -> Q (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 393 393 N -> T (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 395 395 A -> P (in Ref. 4; X65538).
{ECO:0000305}.
CONFLICT 398 398 P -> A (in Ref. 4; X65538).
{ECO:0000305}.
SEQUENCE 412 AA; 44899 MW; 3945450AD85EB5BE CRC64;
MKTIFRYILF LALYSCCNTV SAYTSFIVGN NAGVDNYRGP STAAQMTFNY TSTASNLVFY
KPTQLGPTGV KMYWSYLDTG TGGGILYCNT SGRANPGPIT IENAMVYSGK DYGGHKLFNT
SVPGLYYTML ISRVWSAYDT ITDIQSPGIY IGDPSNQEFF FSVTDSDLQT KGCNKADDYD
KFWAIGGIVH NITVEFYTDT NFDPTLNQQV QLSSSSNYLY SFKAYSPGTK VVDHSNHIYV
NFTLNNVKLT LPTCFTSILT GPSVNGSTVR MGEYSSGTIK NGASPVPFDI SLQNCIRVRN
IETKLVTGKV GTQNTQLLGN TLTGSTAAKG VGVLIEGLAT SKNPLMTLKP NDTNSVYIDY
ETEDDTSDGV YPNQGNGTSQ PLHFQATLKQ DGNIAIEPGE FKATSTFQVT YP


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