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Uncharacterized protein

 F1SHN7_PIG              Unreviewed;      2525 AA.
F1SHN7;
03-MAY-2011, integrated into UniProtKB/TrEMBL.
22-NOV-2017, sequence version 3.
12-SEP-2018, entry version 64.
SubName: Full=Leucine-rich repeat serine/threonine-protein kinase 2 {ECO:0000313|Ensembl:ENSSSCP00000000832};
Name=LRRK2 {ECO:0000313|Ensembl:ENSSSCP00000000832};
Sus scrofa (Pig).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae;
Sus.
NCBI_TaxID=9823 {ECO:0000313|Ensembl:ENSSSCP00000000832, ECO:0000313|Proteomes:UP000008227};
[1] {ECO:0000313|Ensembl:ENSSSCP00000000832, ECO:0000313|Proteomes:UP000008227}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Duroc {ECO:0000313|Ensembl:ENSSSCP00000000832};
Porcine genome sequencing project;
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSSSCP00000000832}
IDENTIFICATION.
Ensembl;
Submitted (MAY-2011) to UniProtKB.
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EMBL; AEMK02000037; -; NOT_ANNOTATED_CDS; Genomic_DNA.
STRING; 9823.ENSSSCP00000000832; -.
PaxDb; F1SHN7; -.
PRIDE; F1SHN7; -.
Ensembl; ENSSSCT00000000849; ENSSSCP00000000832; ENSSSCG00000000784.
eggNOG; KOG0192; Eukaryota.
eggNOG; KOG0619; Eukaryota.
eggNOG; COG1100; LUCA.
eggNOG; COG4886; LUCA.
GeneTree; ENSGT00910000144054; -.
InParanoid; F1SHN7; -.
OrthoDB; EOG091G003N; -.
TreeFam; TF313679; -.
Reactome; R-SSC-8857538; PTK6 promotes HIF1A stabilization.
Proteomes; UP000008227; Chromosome 5.
Bgee; ENSSSCG00000000784; Expressed in 5 organ(s), highest expression level in lung.
GO; GO:0044753; C:amphisome; IEA:Ensembl.
GO; GO:0044754; C:autolysosome; IEA:Ensembl.
GO; GO:0099400; C:caveola neck; IEA:Ensembl.
GO; GO:0032473; C:cytoplasmic side of mitochondrial outer membrane; IEA:Ensembl.
GO; GO:0005829; C:cytosol; IBA:GO_Central.
GO; GO:0032839; C:dendrite cytoplasm; IEA:Ensembl.
GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
GO; GO:0005768; C:endosome; IBA:GO_Central.
GO; GO:0005794; C:Golgi apparatus; IBA:GO_Central.
GO; GO:0005798; C:Golgi-associated vesicle; IEA:Ensembl.
GO; GO:0030426; C:growth cone; IEA:Ensembl.
GO; GO:0016234; C:inclusion body; IEA:Ensembl.
GO; GO:0005764; C:lysosome; IBA:GO_Central.
GO; GO:0045121; C:membrane raft; IBA:GO_Central.
GO; GO:0005902; C:microvillus; IEA:Ensembl.
GO; GO:0005743; C:mitochondrial inner membrane; IEA:Ensembl.
GO; GO:0005759; C:mitochondrial matrix; IEA:Ensembl.
GO; GO:0031966; C:mitochondrial membrane; IBA:GO_Central.
GO; GO:0097487; C:multivesicular body, internal vesicle; IEA:Ensembl.
GO; GO:0043005; C:neuron projection; IBA:GO_Central.
GO; GO:0005634; C:nucleus; IEA:Ensembl.
GO; GO:0043204; C:perikaryon; IEA:Ensembl.
GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
GO; GO:0098794; C:postsynapse; IEA:GOC.
GO; GO:1990904; C:ribonucleoprotein complex; IEA:Ensembl.
GO; GO:0008021; C:synaptic vesicle; IEA:Ensembl.
GO; GO:0005802; C:trans-Golgi network; IEA:Ensembl.
GO; GO:1990909; C:Wnt signalosome; IEA:Ensembl.
GO; GO:0003779; F:actin binding; IEA:Ensembl.
GO; GO:0005524; F:ATP binding; IEA:InterPro.
GO; GO:1904713; F:beta-catenin destruction complex binding; IEA:Ensembl.
GO; GO:0030276; F:clathrin binding; IEA:Ensembl.
GO; GO:0005525; F:GTP binding; IEA:Ensembl.
GO; GO:0034211; F:GTP-dependent protein kinase activity; IEA:Ensembl.
GO; GO:0005096; F:GTPase activator activity; IEA:Ensembl.
GO; GO:0003924; F:GTPase activity; IEA:Ensembl.
GO; GO:0044325; F:ion channel binding; IEA:Ensembl.
GO; GO:0004708; F:MAP kinase kinase activity; IEA:Ensembl.
GO; GO:0036479; F:peroxidase inhibitor activity; IEA:Ensembl.
GO; GO:0042803; F:protein homodimerization activity; IEA:Ensembl.
GO; GO:0051018; F:protein kinase A binding; IEA:Ensembl.
GO; GO:0004674; F:protein serine/threonine kinase activity; IBA:GO_Central.
GO; GO:0017048; F:Rho GTPase binding; IBA:GO_Central.
GO; GO:0017075; F:syntaxin-1 binding; IEA:Ensembl.
GO; GO:0015631; F:tubulin binding; IEA:Ensembl.
GO; GO:0000186; P:activation of MAPKK activity; IEA:Ensembl.
GO; GO:0019722; P:calcium-mediated signaling; IBA:GO_Central.
GO; GO:0034613; P:cellular protein localization; IEA:Ensembl.
GO; GO:1903351; P:cellular response to dopamine; IEA:Ensembl.
GO; GO:0071287; P:cellular response to manganese ion; IEA:Ensembl.
GO; GO:0034599; P:cellular response to oxidative stress; IEA:Ensembl.
GO; GO:0009267; P:cellular response to starvation; IEA:Ensembl.
GO; GO:0008340; P:determination of adult lifespan; IEA:Ensembl.
GO; GO:0006897; P:endocytosis; IEA:Ensembl.
GO; GO:0060079; P:excitatory postsynaptic potential; IEA:Ensembl.
GO; GO:0007030; P:Golgi organization; IEA:Ensembl.
GO; GO:0046039; P:GTP metabolic process; IEA:Ensembl.
GO; GO:0048312; P:intracellular distribution of mitochondria; IEA:Ensembl.
GO; GO:0035641; P:locomotory exploration behavior; IEA:Ensembl.
GO; GO:0007005; P:mitochondrion organization; IBA:GO_Central.
GO; GO:1902902; P:negative regulation of autophagosome assembly; IBA:GO_Central.
GO; GO:1902236; P:negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway; IEA:Ensembl.
GO; GO:0090394; P:negative regulation of excitatory postsynaptic potential; IEA:Ensembl.
GO; GO:0034260; P:negative regulation of GTPase activity; IEA:Ensembl.
GO; GO:1903206; P:negative regulation of hydrogen peroxide-induced cell death; IEA:Ensembl.
GO; GO:1901215; P:negative regulation of neuron death; IEA:Ensembl.
GO; GO:0032091; P:negative regulation of protein binding; IEA:Ensembl.
GO; GO:0001933; P:negative regulation of protein phosphorylation; IEA:Ensembl.
GO; GO:0010955; P:negative regulation of protein processing; IEA:Ensembl.
GO; GO:1903215; P:negative regulation of protein targeting to mitochondrion; IEA:Ensembl.
GO; GO:1903125; P:negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation; IEA:Ensembl.
GO; GO:0007528; P:neuromuscular junction development; IEA:Ensembl.
GO; GO:0070997; P:neuron death; IEA:Ensembl.
GO; GO:0048812; P:neuron projection morphogenesis; IEA:Ensembl.
GO; GO:0018105; P:peptidyl-serine phosphorylation; IEA:Ensembl.
GO; GO:0010508; P:positive regulation of autophagy; IEA:Ensembl.
GO; GO:0090263; P:positive regulation of canonical Wnt signaling pathway; IEA:Ensembl.
GO; GO:0060161; P:positive regulation of dopamine receptor signaling pathway; IEA:Ensembl.
GO; GO:1901727; P:positive regulation of histone deacetylase activity; IEA:Ensembl.
GO; GO:0043068; P:positive regulation of programmed cell death; IEA:Ensembl.
GO; GO:0032436; P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process; IEA:Ensembl.
GO; GO:1902499; P:positive regulation of protein autoubiquitination; IEA:Ensembl.
GO; GO:0032092; P:positive regulation of protein binding; IEA:Ensembl.
GO; GO:0033160; P:positive regulation of protein import into nucleus, translocation; IEA:Ensembl.
GO; GO:0046777; P:protein autophosphorylation; IEA:Ensembl.
GO; GO:0072593; P:reactive oxygen species metabolic process; IEA:Ensembl.
GO; GO:2000172; P:regulation of branching morphogenesis of a nerve; IEA:Ensembl.
GO; GO:1905289; P:regulation of CAMKK-AMPK signaling cascade; IEA:Ensembl.
GO; GO:0061001; P:regulation of dendritic spine morphogenesis; IBA:GO_Central.
GO; GO:0035564; P:regulation of kidney size; IEA:Ensembl.
GO; GO:0040012; P:regulation of locomotion; IEA:Ensembl.
GO; GO:0035751; P:regulation of lysosomal lumen pH; IEA:Ensembl.
GO; GO:0051900; P:regulation of mitochondrial depolarization; IEA:Ensembl.
GO; GO:1902692; P:regulation of neuroblast proliferation; IEA:Ensembl.
GO; GO:0014041; P:regulation of neuron maturation; IEA:Ensembl.
GO; GO:0010738; P:regulation of protein kinase A signaling; IEA:Ensembl.
GO; GO:1905279; P:regulation of retrograde transport, endosome to Golgi; IBA:GO_Central.
GO; GO:0051966; P:regulation of synaptic transmission, glutamatergic; IEA:Ensembl.
GO; GO:2000300; P:regulation of synaptic vesicle exocytosis; IEA:Ensembl.
GO; GO:1902803; P:regulation of synaptic vesicle transport; IBA:GO_Central.
GO; GO:0022028; P:tangential migration from the subventricular zone to the olfactory bulb; IEA:Ensembl.
GO; GO:1904887; P:Wnt signalosome assembly; IEA:Ensembl.
Gene3D; 1.25.10.10; -; 2.
Gene3D; 1.25.40.20; -; 1.
Gene3D; 2.130.10.10; -; 1.
Gene3D; 3.80.10.10; -; 3.
InterPro; IPR036770; Ankyrin_rpt-contain_sf.
InterPro; IPR011989; ARM-like.
InterPro; IPR016024; ARM-type_fold.
InterPro; IPR032171; COR.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR001611; Leu-rich_rpt.
InterPro; IPR025875; Leu-rich_rpt_4.
InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
InterPro; IPR032675; LRR_dom_sf.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR017441; Protein_kinase_ATP_BS.
InterPro; IPR020859; ROC_dom.
InterPro; IPR008271; Ser/Thr_kinase_AS.
InterPro; IPR005225; Small_GTP-bd_dom.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
InterPro; IPR036322; WD40_repeat_dom_sf.
Pfam; PF16095; COR; 1.
Pfam; PF12799; LRR_4; 1.
Pfam; PF13855; LRR_8; 1.
Pfam; PF00069; Pkinase; 1.
SMART; SM00369; LRR_TYP; 8.
SMART; SM00220; S_TKc; 1.
SUPFAM; SSF48371; SSF48371; 2.
SUPFAM; SSF50978; SSF50978; 2.
SUPFAM; SSF52540; SSF52540; 1.
SUPFAM; SSF56112; SSF56112; 1.
TIGRFAMs; TIGR00231; small_GTP; 1.
PROSITE; PS51450; LRR; 11.
PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
PROSITE; PS51424; ROC; 1.
4: Predicted;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000008227};
Leucine-rich repeat {ECO:0000256|SAAS:SAAS00537711};
Reference proteome {ECO:0000313|Proteomes:UP000008227};
Repeat {ECO:0000256|SAAS:SAAS00537628}.
COILED 320 347 {ECO:0000256|SAM:Coils}.
SEQUENCE 2525 AA; 285223 MW; EA6E61E995FD1940 CRC64;
MASGSCQGCE EEDEEALKKL IVRLNNVQEG KQIETLVQIL EDMLVFTYAD HASRLFQDKN
VHVPLLIVLD SYMRVASVQQ VGWSLLCKLI EICPNTMQSL MGPQDIGHDW EALGIHQLIL
KMLTVHNASV SLSTVGLKAL DLLLTSGKIT LLILDEESDI FLLIFDAMRT FSANDEVQKL
GCKALHVLFE RVSEEQLTEF VENKDYVILL SALKKFKDEE EIVLHVLHCL HSLAIPCSNV
EVLMSGNVRC YNIVVEAMKA FPVNEKIQEV SCCLLHRLTL GNFFNILVLN EVHAFVVRAV
QQYSENAVLQ IAALSSLALL TETIFLNQDL EEKNENQEND DEEEDKLFWL EACYKALTWH
RKNKHVQEAA CWALNNLLMY QNSLHEKIGD EDGQFPAHRE VMLSMLMHSS SKEVFQASAN
ALSTLLEQNV NFRKILLSKG IYLNVLELMQ KHIHSPEVAE SGCKMLNHLF EGSNTSLDTM
AAVAPKIITV MKSHETSLSV QLEALRAILH FIVPDITEES REDTEYQHKL NMVKKQCFRN
DIHKLVLAAL NRFIGNPGIQ KCGLKVISSL AYFPDALEVL SPEGAIDSVL HTLQMYPDDQ
EIQCLGLSLI GCLVTKKNLC LGTHLLAKIL ISSLQRFKDI GEVQIKGFQT ILTILEMSVS
FSKLLVNHSF DSVIFHQMSS GMEQKDQQFL NLCCKCFAIV AMDDELKSVM LERACDQNNS
IMVECLLLLG ADVNCAKEAT SLIYQVCEKA SSPKLVELLL NSGSREQDVR KALTISIGKG
DSQVISLLLR RLALDLANNS ICLGGFCMGK IEPSWLGPLF PDKTSNLRKE TNVGSTLARM
VLRYQMKSAV EEGAASGSRR NLSEEILDKF DEWTFIPDSY VDSVFGQSDD LDSEGSEGSF
LVKKKANSIS VGEFYRDAAL QRCSPNLQRH SNSLGPMVDY EDLLKRKRKI LSSDDSLRTS
KLQSHVRHSD SVSSLASERE NITSLDLSAN ELKDIDALSQ KSCISGHLEH LEKLELHQNA
LTSFPQQLCE TLKCLTHLDL HSNKFTSFPS YLLKMNCIAN LDVSRNDIGP SVVLDPAVKC
PTLKQFNLSY NQLSSLPENL SDVVEKLEQL ILEGNKISGV CLPLSLKELK ILNLSKNRIS
SFSEDFLEAC PQVESLSARM NFLAAMPFLP SSMTSLKLSQ NRFTCVPEAI LNLPHLRSLD
MSSNDIKYLP GPVHWRSMNL RELLFSHNQI STLDLSEKAC AWSRVEKLHL SHNKLKEIPP
EIGCLENLTS LDVSCNLELR SFPNEMGKLS KIWDLPLDDL HLNFDFKHIG CKAKDIIRFL
QQRLKKAVPY NRMKLMIVGN TGSGKTTLLQ QLMRIKKSDL GMQGATVGID VKDWPIQIRG
KRKKDLILNV WDFAGREEFY STHPHFMTQR ALYLAVYDLS KGQAEVDAMK PWLFNIKARA
SSSPVILVGT HLDVSDEKQR KACISKITKE LLNKRGFPAI RDYHFVNATE ESDALAKLRK
TIINESLNFK IRDQPVVGQL IPDCYVELEK IILSERKNVP IEFPVIDRKR LLQLVKEYQL
QLDENELPHA VHFLNESGVL LHFQDPALQL SDLYFVEPKW LCKVMAQILT VKVEGCPKYP
KGIISRRDVE KFLSKKKRFP KNYMSQYFKL LEKFQIALPT GEEYLLVPSS LSDHRPVIEL
PHCENSEIII RLYEMPYFPM GFWSRLINRL LEISPYMLSG RERALRPNRM YWRQGIYLNW
SPEAYCLVGS EVLDNHPESF LKITVPSCRK GCILLGQVVD HIDSLMEEWF PGLLEIDICG
EGETLLKKWA LYSFNDGEEH QKILLDDLMK KAEGGDLLVN PDQPRLTIPI SQIAPDLTLA
DLPRNIMLNS DELKFEQAPE FLLGDGSFGS VYRATYEGEE VAVKIFNKHT SLRLLRQELV
VLCHLHHPSL ISLLAAGIRP RMLVMELASK GSLDRLLQQD KASLTRTLQH RIALHVADGL
RYLHSAMIIY RDLKPHNVLL FTLYPNAAII AKIADYGIAQ YCCRMGIKTS EGTPGFRAPE
VARGNVIYNQ QADVYSFGLL LYDILTTGGR IAEGLKFPNE FDELAIQGKL PDPVKEYGCA
PWPMVEKLIK KCLKENPQER PTSAQVFDIL NSAELICLMR RMSIPKNFIV ECMVASNHNS
KNASVWLGCG HTDKGQLSFL DLNTERYTSE EVTDSRILCL ALVHLPLEKE SWIVSGTQSG
VLLVINTEDG RKRHTLEKMT DSVTCLYCNS FSKPSKQKNF LLVGTADGNL AVFEDKSVKC
KGAAPLKILS IGNVSTPLMC LSESMNLTEK NIMWGGCGTK VFSFSDDFTI QKLIETRTNQ
LFSYASFSDS NIIAVVVDTA LYIAKKNSPF VEVRDKKTEK LCELIDCVHF LKEELAKANK
ELKHKLSYSG RVKTLCLQKN TALWIGTGGG HILLLDLSTR RIMRIIHNFC DSVRAMMTTQ
LGSLKNVMLV LGYNRKSAEG IQHQKEIESC LSIWDINLPH EVQNLEKHIE VRKELAEKMR
RISVE


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