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V-type ATP synthase alpha chain (EC 3.6.3.14) (V-ATPase subunit A) [Cleaved into: Pab AtpA intein (Pab VMA intein)]

 VATA_PYRAB              Reviewed;        1017 AA.
Q9UXU7; G8ZKU4;
24-JAN-2001, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
07-JUN-2017, entry version 124.
RecName: Full=V-type ATP synthase alpha chain;
EC=3.6.3.14;
AltName: Full=V-ATPase subunit A;
Contains:
RecName: Full=Pab AtpA intein;
AltName: Full=Pab VMA intein;
Name=atpA; OrderedLocusNames=PYRAB17610; ORFNames=PAB2378;
Pyrococcus abyssi (strain GE5 / Orsay).
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae;
Pyrococcus.
NCBI_TaxID=272844;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=GE5 / Orsay;
PubMed=12622808; DOI=10.1046/j.1365-2958.2003.03381.x;
Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O.,
Poch O., Prieur D., Querellou J., Ripp R., Thierry J.-C.,
Van der Oost J., Weissenbach J., Zivanovic Y., Forterre P.;
"An integrated analysis of the genome of the hyperthermophilic
archaeon Pyrococcus abyssi.";
Mol. Microbiol. 47:1495-1512(2003).
[2]
GENOME REANNOTATION.
STRAIN=GE5 / Orsay;
PubMed=22057919; DOI=10.1007/s00284-011-0035-x;
Gao J., Wang J.;
"Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5
and Pyrococcus furiosus DSM 3638.";
Curr. Microbiol. 64:118-129(2012).
-!- FUNCTION: Produces ATP from ADP in the presence of a proton
gradient across the membrane. The archaeal alpha chain is a
catalytic subunit.
-!- CATALYTIC ACTIVITY: ATP + H(2)O + H(+)(In) = ADP + phosphate +
H(+)(Out).
-!- PTM: This protein undergoes a protein self splicing that involves
a post-translational excision of the VDE intervening region
(intein) followed by peptide ligation. {ECO:0000305}.
-!- MISCELLANEOUS: The intein interrupts the ATP-binding site.
-!- SIMILARITY: Belongs to the ATPase alpha/beta chains family.
{ECO:0000305}.
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EMBL; AJ248288; CAB50666.1; -; Genomic_DNA.
EMBL; HE613800; CCE71235.1; -; Genomic_DNA.
PIR; D75028; D75028.
RefSeq; WP_010868880.1; NC_000868.1.
ProteinModelPortal; Q9UXU7; -.
STRING; 272844.PAB2378; -.
EnsemblBacteria; CAB50666; CAB50666; PAB2378.
GeneID; 1496064; -.
KEGG; pab:PAB2378; -.
PATRIC; fig|272844.11.peg.1880; -.
eggNOG; arCOG00868; Archaea.
eggNOG; arCOG03154; Archaea.
eggNOG; COG1155; LUCA.
HOGENOM; HOG000161057; -.
KO; K02117; -.
OMA; HNTVTQH; -.
OrthoDB; POG093Z00V1; -.
Proteomes; UP000000810; Chromosome.
Proteomes; UP000009139; Chromosome.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004519; F:endonuclease activity; IEA:InterPro.
GO; GO:0006754; P:ATP biosynthetic process; IEA:UniProtKB-KW.
GO; GO:0016539; P:intein-mediated protein splicing; IEA:InterPro.
GO; GO:0015992; P:proton transport; IEA:UniProtKB-KW.
Gene3D; 1.10.1140.10; -; 1.
Gene3D; 3.10.28.10; -; 2.
HAMAP; MF_00309; ATP_synth_A_arch; 1.
InterPro; IPR031686; ATP-synth_a_Xtn.
InterPro; IPR020003; ATPase_a/bsu_AS.
InterPro; IPR004100; ATPase_F1/V1/A1_a/bsu_N.
InterPro; IPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd.
InterPro; IPR024034; ATPase_F1/V1_b/a_C.
InterPro; IPR028992; Hedgehog/Intein_dom.
InterPro; IPR003586; Hint_dom_C.
InterPro; IPR003587; Hint_dom_N.
InterPro; IPR027434; Homing_endonucl.
InterPro; IPR006142; INTEIN.
InterPro; IPR030934; Intein_C.
InterPro; IPR004042; Intein_endonuc.
InterPro; IPR006141; Intein_N.
InterPro; IPR004860; LAGLIDADG_2.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR022878; V-ATPase_asu.
PANTHER; PTHR43607; PTHR43607; 1.
Pfam; PF00006; ATP-synt_ab; 1.
Pfam; PF02874; ATP-synt_ab_N; 1.
Pfam; PF16886; ATP-synt_ab_Xtn; 1.
Pfam; PF14528; LAGLIDADG_3; 1.
PRINTS; PR00379; INTEIN.
SMART; SM00305; HintC; 1.
SMART; SM00306; HintN; 1.
SUPFAM; SSF50615; SSF50615; 1.
SUPFAM; SSF51294; SSF51294; 2.
SUPFAM; SSF52540; SSF52540; 2.
SUPFAM; SSF55608; SSF55608; 1.
TIGRFAMs; TIGR01443; intein_Cterm; 1.
TIGRFAMs; TIGR01445; intein_Nterm; 1.
PROSITE; PS00152; ATPASE_ALPHA_BETA; 1.
PROSITE; PS50818; INTEIN_C_TER; 1.
PROSITE; PS50819; INTEIN_ENDONUCLEASE; 1.
PROSITE; PS50817; INTEIN_N_TER; 1.
3: Inferred from homology;
ATP synthesis; ATP-binding; Autocatalytic cleavage; Complete proteome;
Hydrogen ion transport; Hydrolase; Ion transport; Nucleotide-binding;
Protein splicing; Transport.
CHAIN 1 240 V-type ATP synthase alpha chain, 1st
part. {ECO:0000255}.
/FTId=PRO_0000002461.
CHAIN 241 669 Pab AtpA intein. {ECO:0000255}.
/FTId=PRO_0000002462.
CHAIN 670 1017 V-type ATP synthase alpha chain, 2nd
part. {ECO:0000255}.
/FTId=PRO_0000002463.
DOMAIN 396 529 DOD-type homing endonuclease.
SEQUENCE 1017 AA; 114354 MW; 0F2008895F3E407A CRC64;
MVAKGRIIRV TGPLVVADGM KGAKMYEVVR VGELGLIGEI IRLEGDKAVI QVYEETAGVR
PGEPVIGTGS SLSVELGPGL LTSIYDGIQR PLEVIREKTG DFIARGVTAP ALPRDKKWHF
IPKVKVGDKV VGGDIIGEVP ETSIITHKIM VPPGIEGEIV EIAEEGEYTI EEVIAKVKTP
SGEIKELKMY QRWPVRVKRP YKEKLPPEVP LITGQRVIDT FFPQAKGGTA AIPGPFGSGK
CVDGDTLVLT KEFGLIKIKD LYKILDGKGK KTVNGNEEWT ELERPITLYG YKDGKIVEIK
ATHVYKGFSA GMIEIRTRTG RKIKVTPIHK LFTGRVTKNG LEIREVMAKD LKKGDRIIVA
KKIDGGERVK LNIRVEQKRG KKIRIPDVLD EKLAEFLGYL IADGTLKPRT VAIYNNDESL
LRRANELANE LFNIEGKIVK GRTVKALLIH SKALVEFFSK LGVPRNKKAR TWKVPKELLI
SEPEVVKAFI KAYIMCDGYY DENKGEIEIV TASEEAAYGF SYLLAKLGIY AIIREKIIGD
KVYYRVVISG ESNLEKLGIE RVGRGYTSYD IVPVEVEELY NALGRPYAEL KRAGIEIHNY
LSGENMSYEM FRKFAKFVGM EEIAENHLTH VLFDEIVEIR YISEGQEVYD VTTETHNFIG
GNMPTLLHNT VTQHQLAKWS DAQVVIYIGC GERGNEMTDV LEEFPKLKDP KTGKPLMERT
VLIANTSNMP VAAREASIYT GITIAEYFRD MGYDVALMAD STSRWAEALR EISGRLEEMP
GEEGYPAYLA SKLAEFYERA GRVVTLGSDY RVGSVSVIGA VSPPGGDFSE PVVQNTLRVV
KVFWALDADL ARRRHFPAIN WLTSYSLYVD AVKDWWHKNV DPEWKAMRDK AMELLQKESE
LQEIVRIVGP DALPERERAI LLVARMLRED YLQQDAFDEV DTYCPPEKQV TMMRVLLNFY
DKTMEAISRG VPLEEIAKLP VREEIGRMKF EPDVGKIKAL IDKTNEQFEE LFKKYGA


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