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Vacuolar protein sorting-associated protein 2 homolog 1 (AtVPS2-1) (Charged multivesicular body protein 2 homolog 1) (ESCRT-III complex subunit VPS2 homolog 1) (SNF7-like protein)

 VPS2A_ARATH             Reviewed;         225 AA.
Q9SKI2; Q701A4; Q701B3; Q701B7; Q701C5; Q701E0; Q701E1; Q701E3;
Q701F9; Q701G8; Q701J8; Q8L915;
14-APR-2009, integrated into UniProtKB/Swiss-Prot.
01-JUN-2002, sequence version 2.
16-JAN-2019, entry version 98.
RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 1;
AltName: Full=Charged multivesicular body protein 2 homolog 1;
AltName: Full=ESCRT-III complex subunit VPS2 homolog 1;
AltName: Full=SNF7-like protein;
Name=VPS2.1; Synonyms=CHMP2-1, SLP; OrderedLocusNames=At2g06530;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
Nature 402:761-768(1999).
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
Science 302:842-846(2003).
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
STRAIN=cv. Ag-0, cv. Alc-0, cv. Bad, cv. Bas-1, cv. Bas-2, cv. Bas-3,
cv. Bij, cv. Bla-1, cv. Blh-1, cv. Br-0, cv. Bs-2, cv. Bur-0,
cv. Can-0, cv. Cha-1, cv. Cha-2, cv. Chi-0, cv. Chi-1, cv. Co,
cv. Columbia, cv. Ct-1, cv. Cvi-0, cv. Dar, cv. Di-1, cv. Dul,
cv. Edi-0, cv. Es-0, cv. Est-0, cv. Flo, cv. Gat, cv. Gie, cv. Gre-0,
cv. Han, cv. HOG, cv. In-0, cv. Ita, cv. K-oz-1, cv. K-oz-2,
cv. K-oz-3, cv. Kaz-1, cv. Kaz-2, cv. Kaz-3, cv. KEN, cv. Kent,
cv. Kga, cv. Kly-1, cv. Kly-2, cv. Kly-3, cv. Kly-4, cv. Kly-6,
cv. Kn-0, cv. Ko-2, cv. Kol, cv. Kon, cv. La-0, cv. Leb-1, cv. Leb-2,
cv. Leb-3, cv. Leb-4, cv. Lim, cv. Lip-0, cv. Lis, cv. Ll-2, cv. Mal,
cv. Mas, cv. Mt-0, cv. Nos-1, cv. Nov-1, cv. Nov-2, cv. Nov-3,
cv. Oph, cv. Oy-0, cv. Pan-1, cv. Par, cv. Per-1, cv. Pog-0,
cv. Rak-1, cv. Rak-2, cv. Rak-3, cv. Rsch-0, cv. Rub, cv. Ryb-0,
cv. Sah-0, cv. Sea-0, cv. Sed, cv. Sev-1, cv. Sha, cv. Sie, cv. Sij-1,
cv. Sij-2, cv. Sij-4, cv. St-0, cv. Stw-0, cv. Tsar, cv. Tsu-0,
cv. Wa-1, cv. Wassilewskija-1, cv. Wil-1, and cv. Wt; TISSUE=Leaf;
PubMed=15045663; DOI=10.1055/s-2004-817837;
Schmuths H., Hoffmann M.H., Bachmann K.;
"Geographic distribution and recombination of genomic fragments on the
short arm of chromosome 2 of Arabidopsis thaliana.";
Plant Biol. 6:128-139(2004).
PubMed=17090720; DOI=10.1242/dev.02654;
Spitzer C., Schellmann S., Sabovljevic A., Shahriari M.,
Keshavaiah C., Bechtold N., Herzog M., Mueller S., Hanisch F.-G.,
Huelskamp M.;
"The Arabidopsis elch mutant reveals functions of an ESCRT component
in cytokinesis.";
Development 133:4679-4689(2006).
PubMed=16488176; DOI=10.1016/j.tplants.2006.01.008;
Winter V., Hauser M.-T.;
"Exploring the ESCRTing machinery in eukaryotes.";
Trends Plant Sci. 11:115-123(2006).
PubMed=21810997; DOI=10.1105/tpc.111.087254;
Katsiarimpa A., Anzenberger F., Schlager N., Neubert S., Hauser M.T.,
Schwechheimer C., Isono E.;
"The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-
III subunits and regulates their localization.";
Plant Cell 23:3026-3040(2011).
PubMed=24812106; DOI=10.1104/pp.114.238378;
Cai Y., Zhuang X., Gao C., Wang X., Jiang L.;
"The Arabidopsis endosomal sorting complex required for transport III
regulates internal vesicle formation of the prevacuolar compartment
and is required for plant development.";
Plant Physiol. 165:1328-1343(2014).
-!- FUNCTION: Component of the ESCRT-III complex, which is required
for multivesicular bodies (MVBs) formation and sorting of
endosomal cargo proteins into MVBs. The ESCRT-III complex is
probably involved in the concentration of MVB cargo (By
similarity). {ECO:0000250}.
-!- SUBUNIT: Component of the endosomal sorting required for transport
complex III (ESCRT-III), composed at least of VPS2, VPS20, VPS24
and VPS32 (By similarity). Interacts with SKD1 (PubMed:21810997,
PubMed:24812106). {ECO:0000250|UniProtKB:O43633,
ECO:0000269|PubMed:21810997, ECO:0000269|PubMed:24812106}.
Q0WTY4:VPS2.2; NbExp=3; IntAct=EBI-3865345, EBI-3865323;
Q9FF81:VPS36; NbExp=3; IntAct=EBI-3865345, EBI-3865302;
Q9SCP9:VPS37-1; NbExp=3; IntAct=EBI-3865345, EBI-3865264;
-!- SUBCELLULAR LOCATION: Endosome {ECO:0000250}.
-!- SIMILARITY: Belongs to the SNF7 family. {ECO:0000305}.
Sequence=AAM67006.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
Distributed under the Creative Commons Attribution (CC BY 4.0) License
EMBL; AC006420; AAD25152.2; -; Genomic_DNA.
EMBL; CP002685; AEC06012.1; -; Genomic_DNA.
EMBL; AY090953; AAM13999.1; -; mRNA.
EMBL; AY088685; AAM67006.1; ALT_INIT; mRNA.
EMBL; AJ628449; CAF31658.1; -; Genomic_DNA.
EMBL; AJ628450; CAF31659.1; -; Genomic_DNA.
EMBL; AJ628451; CAF31660.1; -; Genomic_DNA.
EMBL; AJ628452; CAF31661.1; -; Genomic_DNA.
EMBL; AJ628453; CAF31662.1; -; Genomic_DNA.
EMBL; AJ628454; CAF31663.1; -; Genomic_DNA.
EMBL; AJ628455; CAF31664.1; -; Genomic_DNA.
EMBL; AJ628456; CAF31665.1; -; Genomic_DNA.
EMBL; AJ628457; CAF31666.1; -; Genomic_DNA.
EMBL; AJ628458; CAF31667.1; -; Genomic_DNA.
EMBL; AJ628459; CAF31668.1; -; Genomic_DNA.
EMBL; AJ628460; CAF31669.1; -; Genomic_DNA.
EMBL; AJ628461; CAF31670.1; -; Genomic_DNA.
EMBL; AJ628462; CAF31671.1; -; Genomic_DNA.
EMBL; AJ628463; CAF31672.1; -; Genomic_DNA.
EMBL; AJ628464; CAF31673.1; -; Genomic_DNA.
EMBL; AJ628465; CAF31674.1; -; Genomic_DNA.
EMBL; AJ628466; CAF31675.1; -; Genomic_DNA.
EMBL; AJ628467; CAF31676.1; -; Genomic_DNA.
EMBL; AJ628468; CAF31677.1; -; Genomic_DNA.
EMBL; AJ628469; CAF31678.1; -; Genomic_DNA.
EMBL; AJ628470; CAF31679.1; -; Genomic_DNA.
EMBL; AJ628471; CAF31680.1; -; Genomic_DNA.
EMBL; AJ628472; CAF31681.1; -; Genomic_DNA.
EMBL; AJ628473; CAF31682.1; -; Genomic_DNA.
EMBL; AJ628474; CAF31683.1; -; Genomic_DNA.
EMBL; AJ628475; CAF31684.1; -; Genomic_DNA.
EMBL; AJ628476; CAF31685.1; -; Genomic_DNA.
EMBL; AJ628477; CAF31686.1; -; Genomic_DNA.
EMBL; AJ628478; CAF31687.1; -; Genomic_DNA.
EMBL; AJ628479; CAF31688.1; -; Genomic_DNA.
EMBL; AJ628480; CAF31689.1; -; Genomic_DNA.
EMBL; AJ628481; CAF31690.1; -; Genomic_DNA.
EMBL; AJ628482; CAF31691.1; -; Genomic_DNA.
EMBL; AJ628483; CAF31692.1; -; Genomic_DNA.
EMBL; AJ628484; CAF31693.1; -; Genomic_DNA.
EMBL; AJ628485; CAF31694.1; -; Genomic_DNA.
EMBL; AJ628486; CAF31695.1; -; Genomic_DNA.
EMBL; AJ628487; CAF31696.1; -; Genomic_DNA.
EMBL; AJ628488; CAF31697.1; -; Genomic_DNA.
EMBL; AJ628489; CAF31698.1; -; Genomic_DNA.
EMBL; AJ628490; CAF31699.1; -; Genomic_DNA.
EMBL; AJ628491; CAF31700.1; -; Genomic_DNA.
EMBL; AJ628492; CAF31701.1; -; Genomic_DNA.
EMBL; AJ628493; CAF31702.1; -; Genomic_DNA.
EMBL; AJ628494; CAF31703.1; -; Genomic_DNA.
EMBL; AJ628495; CAF31704.1; -; Genomic_DNA.
EMBL; AJ628496; CAF31705.1; -; Genomic_DNA.
EMBL; AJ628497; CAF31706.1; -; Genomic_DNA.
EMBL; AJ628498; CAF31707.1; -; Genomic_DNA.
EMBL; AJ628499; CAF31708.1; -; Genomic_DNA.
EMBL; AJ628500; CAF31709.1; -; Genomic_DNA.
EMBL; AJ628501; CAF31710.1; -; Genomic_DNA.
EMBL; AJ628502; CAF31711.1; -; Genomic_DNA.
EMBL; AJ628503; CAF31712.1; -; Genomic_DNA.
EMBL; AJ628504; CAF31713.1; -; Genomic_DNA.
EMBL; AJ628505; CAF31714.1; -; Genomic_DNA.
EMBL; AJ628506; CAF31715.1; -; Genomic_DNA.
EMBL; AJ628507; CAF31716.1; -; Genomic_DNA.
EMBL; AJ628508; CAF31717.1; -; Genomic_DNA.
EMBL; AJ628509; CAF31718.1; -; Genomic_DNA.
EMBL; AJ628510; CAF31719.1; -; Genomic_DNA.
EMBL; AJ628511; CAF31720.1; -; Genomic_DNA.
EMBL; AJ628512; CAF31721.1; -; Genomic_DNA.
EMBL; AJ628513; CAF31722.1; -; Genomic_DNA.
EMBL; AJ628514; CAF31723.1; -; Genomic_DNA.
EMBL; AJ628515; CAF31724.1; -; Genomic_DNA.
EMBL; AJ628516; CAF31725.1; -; Genomic_DNA.
EMBL; AJ628517; CAF31726.1; -; Genomic_DNA.
EMBL; AJ628518; CAF31727.1; -; Genomic_DNA.
EMBL; AJ628519; CAF31728.1; -; Genomic_DNA.
EMBL; AJ628520; CAF31729.1; -; Genomic_DNA.
EMBL; AJ628521; CAF31730.1; -; Genomic_DNA.
EMBL; AJ628522; CAF31731.1; -; Genomic_DNA.
EMBL; AJ628523; CAF31732.1; -; Genomic_DNA.
EMBL; AJ628524; CAF31733.1; -; Genomic_DNA.
EMBL; AJ628525; CAF31734.1; -; Genomic_DNA.
EMBL; AJ628526; CAF31735.1; -; Genomic_DNA.
EMBL; AJ628527; CAF31736.1; -; Genomic_DNA.
EMBL; AJ628528; CAF31737.1; -; Genomic_DNA.
EMBL; AJ628529; CAF31738.1; -; Genomic_DNA.
EMBL; AJ628530; CAF31739.1; -; Genomic_DNA.
EMBL; AJ628531; CAF31740.1; -; Genomic_DNA.
EMBL; AJ628532; CAF31741.1; -; Genomic_DNA.
EMBL; AJ628533; CAF31742.1; -; Genomic_DNA.
EMBL; AJ628534; CAF31743.1; -; Genomic_DNA.
EMBL; AJ628535; CAF31744.1; -; Genomic_DNA.
EMBL; AJ628536; CAF31745.1; -; Genomic_DNA.
EMBL; AJ628537; CAF31746.1; -; Genomic_DNA.
EMBL; AJ628538; CAF31747.1; -; Genomic_DNA.
EMBL; AJ628539; CAF31748.1; -; Genomic_DNA.
EMBL; AJ628540; CAF31749.1; -; Genomic_DNA.
EMBL; AJ628541; CAF31750.1; -; Genomic_DNA.
EMBL; AJ628542; CAF31751.1; -; Genomic_DNA.
EMBL; AJ628543; CAF31752.1; -; Genomic_DNA.
EMBL; AJ628544; CAF31753.1; -; Genomic_DNA.
EMBL; AJ628545; CAF31754.1; -; Genomic_DNA.
EMBL; AJ628546; CAF31755.1; -; Genomic_DNA.
PIR; D84478; D84478.
RefSeq; NP_565336.1; NM_126650.4.
UniGene; At.20774; -.
ProteinModelPortal; Q9SKI2; -.
SMR; Q9SKI2; -.
BioGrid; 606; 9.
IntAct; Q9SKI2; 6.
STRING; 3702.AT2G06530.1; -.
PaxDb; Q9SKI2; -.
EnsemblPlants; AT2G06530.1; AT2G06530.1; AT2G06530.
GeneID; 815211; -.
Gramene; AT2G06530.1; AT2G06530.1; AT2G06530.
KEGG; ath:AT2G06530; -.
Araport; AT2G06530; -.
TAIR; locus:2054612; AT2G06530.
eggNOG; KOG3230; Eukaryota.
eggNOG; COG5491; LUCA.
InParanoid; Q9SKI2; -.
KO; K12191; -.
OrthoDB; 1254120at2759; -.
PhylomeDB; Q9SKI2; -.
Reactome; R-ATH-1632852; Macroautophagy.
Reactome; R-ATH-917729; Endosomal Sorting Complex Required For Transport (ESCRT).
PRO; PR:Q9SKI2; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; Q9SKI2; baseline and differential.
Genevisible; Q9SKI2; AT.
GO; GO:0000815; C:ESCRT III complex; ISS:TAIR.
GO; GO:0005770; C:late endosome; IDA:TAIR.
GO; GO:0005771; C:multivesicular body; IDA:TAIR.
GO; GO:0032509; P:endosome transport via multivesicular body sorting pathway; IBA:GO_Central.
GO; GO:0070676; P:intralumenal vesicle formation; IDA:TAIR.
GO; GO:0045324; P:late endosome to vacuole transport; IBA:GO_Central.
GO; GO:0015031; P:protein transport; IMP:TAIR.
InterPro; IPR005024; Snf7_fam.
Pfam; PF03357; Snf7; 1.
1: Evidence at protein level;
Coiled coil; Complete proteome; Endosome; Protein transport;
Reference proteome; Transport.
CHAIN 1 225 Vacuolar protein sorting-associated
protein 2 homolog 1.
COILED 13 54 {ECO:0000255}.
COMPBIAS 156 162 Poly-Glu.
VARIANT 47 47 E -> Q (in strain: cv. Ag-0).
VARIANT 95 95 K -> R (in strain: cv. Per-1).
VARIANT 143 143 V -> F (in strain: cv. Mal).
VARIANT 182 182 N -> S (in strain: cv. Bas-2).
VARIANT 186 186 G -> S (in strain: cv. Ct-1).
VARIANT 192 192 A -> T (in strain: cv. Tsar).
VARIANT 193 193 A -> T (in strain: cv. Edi-0, cv. Lip-0,
cv. Sie and cv. Bur-0).
VARIANT 198 198 V -> G (in strain: cv. Mas).
VARIANT 198 198 V -> I (in strain: cv. Dul).
SEQUENCE 225 AA; 25292 MW; 7068FB91553C1828 CRC64;

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