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Vesicle transport protein USE1 (Protein D12) (USE1-like protein)

 USE1_MOUSE              Reviewed;         270 AA.
Q9CQ56; Q3TUK0; Q80V73; Q99MB6;
01-FEB-2005, integrated into UniProtKB/Swiss-Prot.
01-JUN-2001, sequence version 1.
05-JUL-2017, entry version 100.
RecName: Full=Vesicle transport protein USE1;
AltName: Full=Protein D12;
AltName: Full=USE1-like protein;
Name=Use1; Synonyms=Use1l;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
STRAIN=BALB/cJ; TISSUE=Bone marrow;
Li L., Yang Y., Stevens R.L.;
"Protein from cultured bone marrow mast cells.";
Submitted (FEB-2001) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=C57BL/6J; TISSUE=Head, and Small intestine;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
STRAIN=C57BL/6J; TISSUE=Brain, and Thymus;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Brain, Heart, Liver, Pancreas, Spleen, and Testis;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
-!- FUNCTION: SNARE that may be involved in targeting and fusion of
Golgi-derived retrograde transport vesicles with the ER.
{ECO:0000250}.
-!- SUBUNIT: Component of a SNARE complex consisting of STX18, USE1L,
BNIP1/SEC20L and SEC22B. Interacts directly with STX18 (By
similarity). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
{ECO:0000250}; Single-pass type IV membrane protein {ECO:0000250}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9CQ56-1; Sequence=Displayed;
Name=2;
IsoId=Q9CQ56-2; Sequence=VSP_012666, VSP_012667;
Note=No experimental confirmation available.;
-!- SIMILARITY: Belongs to the USE1 family. {ECO:0000305}.
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EMBL; AF353245; AAK26661.1; -; mRNA.
EMBL; AK008573; BAB25752.1; -; mRNA.
EMBL; AK012490; BAB28275.1; -; mRNA.
EMBL; AK160726; BAE35971.1; -; mRNA.
EMBL; BC038519; AAH38519.1; -; mRNA.
EMBL; BC075695; AAH75695.1; -; mRNA.
CCDS; CCDS22390.1; -. [Q9CQ56-1]
RefSeq; NP_001139252.1; NM_001145780.1.
RefSeq; NP_080193.1; NM_025917.4. [Q9CQ56-1]
UniGene; Mm.41890; -.
ProteinModelPortal; Q9CQ56; -.
BioGrid; 211882; 4.
STRING; 10090.ENSMUSP00000105680; -.
iPTMnet; Q9CQ56; -.
PhosphoSitePlus; Q9CQ56; -.
EPD; Q9CQ56; -.
PaxDb; Q9CQ56; -.
PRIDE; Q9CQ56; -.
DNASU; 67023; -.
Ensembl; ENSMUST00000019169; ENSMUSP00000019169; ENSMUSG00000002395. [Q9CQ56-1]
Ensembl; ENSMUST00000110054; ENSMUSP00000105681; ENSMUSG00000002395. [Q9CQ56-1]
GeneID; 67023; -.
KEGG; mmu:67023; -.
UCSC; uc009mcp.2; mouse. [Q9CQ56-1]
UCSC; uc009mcs.2; mouse. [Q9CQ56-2]
CTD; 55850; -.
MGI; MGI:1914273; Use1.
eggNOG; KOG2678; Eukaryota.
eggNOG; ENOG410ZN7C; LUCA.
GeneTree; ENSGT00390000014361; -.
HOGENOM; HOG000007677; -.
HOVERGEN; HBG079328; -.
InParanoid; Q9CQ56; -.
KO; K08507; -.
PhylomeDB; Q9CQ56; -.
TreeFam; TF325006; -.
Reactome; R-MMU-6811434; COPI-dependent Golgi-to-ER retrograde traffic.
PRO; PR:Q9CQ56; -.
Proteomes; UP000000589; Chromosome 8.
Bgee; ENSMUSG00000002395; -.
ExpressionAtlas; Q9CQ56; baseline and differential.
Genevisible; Q9CQ56; MM.
GO; GO:0005783; C:endoplasmic reticulum; ISO:MGI.
GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0007029; P:endoplasmic reticulum organization; IMP:MGI.
GO; GO:0071786; P:endoplasmic reticulum tubular network organization; IMP:MGI.
GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
GO; GO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; IMP:MGI.
GO; GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
InterPro; IPR019150; Vesicle_transport_protein_Use1.
PANTHER; PTHR13050; PTHR13050; 1.
Pfam; PF09753; Use1; 1.
1: Evidence at protein level;
Alternative splicing; Coiled coil; Complete proteome;
Endoplasmic reticulum; ER-Golgi transport; Membrane;
Protein transport; Reference proteome; Transmembrane;
Transmembrane helix; Transport.
CHAIN 1 270 Vesicle transport protein USE1.
/FTId=PRO_0000215580.
TOPO_DOM 1 242 Cytoplasmic. {ECO:0000255}.
TRANSMEM 243 263 Helical; Anchor for type IV membrane
protein. {ECO:0000255}.
TOPO_DOM 264 270 Lumenal. {ECO:0000255}.
COILED 206 242 {ECO:0000255}.
VAR_SEQ 1 81 Missing (in isoform 2).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_012666.
VAR_SEQ 153 153 A -> AS (in isoform 2).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_012667.
CONFLICT 29 29 E -> D (in Ref. 1; AAK26661).
{ECO:0000305}.
CONFLICT 38 38 P -> L (in Ref. 1; AAK26661).
{ECO:0000305}.
CONFLICT 194 194 L -> F (in Ref. 1; AAK26661).
{ECO:0000305}.
SEQUENCE 270 AA; 30594 MW; C2CEFCE54C7A30DB CRC64;
MAQAEGAYHR PLATSRLELN LVRLLCRCES MAAEKREPDE WRLEKYVGAL EDMLQALKVQ
ASKPASEVIS EYSRKVDFLK GMLQAEKLTS SSEKALANQF LAPGRVPTTA KERVPATKTV
HLQSRARYTS EMRSELLGME PSGECEVDMR KRAAKGSRPA DERQSASELD LVLQRHQGLQ
EKLAEEMLGL ARSLKTNTLA AQSVIKKDNQ TLSHSLKMAD QNLEKLKLES ERLEQHAQKS
VNWLLWAMLI VVCFVFISMI LFIRIMPRLK


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