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Vesicle transport protein USE1 (USE1-like protein)

 USE1_DROME              Reviewed;         250 AA.
Q9VSU7; Q6NN76;
01-FEB-2005, integrated into UniProtKB/Swiss-Prot.
01-FEB-2005, sequence version 3.
27-SEP-2017, entry version 108.
RecName: Full=Vesicle transport protein USE1;
AltName: Full=USE1-like protein;
Name=Use1; ORFNames=CG14181;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2]
GENOME REANNOTATION.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=Berkeley; TISSUE=Testis;
Stapleton M., Carlson J.W., Chavez C., Frise E., George R.A.,
Pacleb J.M., Park S., Wan K.H., Yu C., Rubin G.M., Celniker S.E.;
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[4]
FUNCTION, AND SUBCELLULAR LOCATION.
PubMed=16452979; DOI=10.1038/nature04377;
Bard F., Casano L., Mallabiabarrena A., Wallace E., Saito K.,
Kitayama H., Guizzunti G., Hu Y., Wendler F., Dasgupta R.,
Perrimon N., Malhotra V.;
"Functional genomics reveals genes involved in protein secretion and
Golgi organization.";
Nature 439:604-607(2006).
-!- FUNCTION: SNARE that may be involved in targeting and fusion of
Golgi-derived retrograde transport vesicles with the ER (By
similarity). Required for protein secretion. {ECO:0000250,
ECO:0000269|PubMed:16452979}.
-!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
{ECO:0000269|PubMed:16452979}; Single-pass type IV membrane
protein {ECO:0000269|PubMed:16452979}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9VSU7-1; Sequence=Displayed;
Note=No experimental confirmation available.;
Name=2;
IsoId=Q9VSU7-2; Sequence=VSP_012668;
Note=No experimental confirmation available.;
-!- SIMILARITY: Belongs to the USE1 family. {ECO:0000305}.
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EMBL; AE014296; AAF50314.3; -; Genomic_DNA.
EMBL; BT011417; AAR96209.1; -; mRNA.
RefSeq; NP_648289.2; NM_140032.3. [Q9VSU7-1]
UniGene; Dm.15456; -.
ProteinModelPortal; Q9VSU7; -.
BioGrid; 64451; 24.
STRING; 7227.FBpp0076264; -.
PaxDb; Q9VSU7; -.
PRIDE; Q9VSU7; -.
EnsemblMetazoa; FBtr0076537; FBpp0076264; FBgn0035965. [Q9VSU7-1]
GeneID; 39051; -.
KEGG; dme:Dmel_CG14181; -.
UCSC; CG14181-RA; d. melanogaster. [Q9VSU7-1]
CTD; 55850; -.
FlyBase; FBgn0035965; Use1.
eggNOG; KOG2678; Eukaryota.
eggNOG; ENOG410ZN7C; LUCA.
GeneTree; ENSGT00390000014361; -.
InParanoid; Q9VSU7; -.
KO; K08507; -.
OMA; AYKCWLW; -.
OrthoDB; EOG091G0HJ5; -.
PhylomeDB; Q9VSU7; -.
Reactome; R-DME-6811434; COPI-dependent Golgi-to-ER retrograde traffic.
ChiTaRS; Use1; fly.
GenomeRNAi; 39051; -.
PRO; PR:Q9VSU7; -.
Proteomes; UP000000803; Chromosome 3L.
Bgee; FBgn0035965; -.
Genevisible; Q9VSU7; DM.
GO; GO:0012505; C:endomembrane system; IDA:FlyBase.
GO; GO:0005783; C:endoplasmic reticulum; IDA:FlyBase.
GO; GO:0071458; C:integral component of cytoplasmic side of endoplasmic reticulum membrane; ISS:FlyBase.
GO; GO:0031201; C:SNARE complex; ISS:FlyBase.
GO; GO:0005484; F:SNAP receptor activity; ISS:UniProtKB.
GO; GO:0007030; P:Golgi organization; IMP:FlyBase.
GO; GO:0009306; P:protein secretion; IMP:FlyBase.
GO; GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; ISS:UniProtKB.
InterPro; IPR019150; Vesicle_transport_protein_Use1.
PANTHER; PTHR13050; PTHR13050; 1.
Pfam; PF09753; Use1; 1.
2: Evidence at transcript level;
Alternative splicing; Coiled coil; Complete proteome;
Endoplasmic reticulum; ER-Golgi transport; Membrane;
Protein transport; Reference proteome; Transmembrane;
Transmembrane helix; Transport.
CHAIN 1 250 Vesicle transport protein USE1.
/FTId=PRO_0000215582.
TOPO_DOM 1 221 Cytoplasmic. {ECO:0000255}.
TRANSMEM 222 242 Helical; Anchor for type IV membrane
protein. {ECO:0000255}.
TOPO_DOM 243 250 Lumenal. {ECO:0000255}.
COILED 197 221 {ECO:0000255}.
COMPBIAS 123 126 Poly-Arg.
COMPBIAS 131 137 Poly-Ser.
COMPBIAS 246 249 Poly-Lys.
VAR_SEQ 1 38 Missing (in isoform 2).
{ECO:0000303|Ref.3}.
/FTId=VSP_012668.
CONFLICT 52 52 V -> A (in Ref. 3; AAR96209).
{ECO:0000305}.
CONFLICT 99 99 I -> M (in Ref. 3; AAR96209).
{ECO:0000305}.
CONFLICT 117 117 Q -> H (in Ref. 3; AAR96209).
{ECO:0000305}.
SEQUENCE 250 AA; 28286 MW; 86278D83CC8B84FE CRC64;
MATKLNVNIR TLLANCEELA KSEQNFWRLQ KFIKSLDTML AELEAMGDPQ SVKRIPGYLE
RLQALKISTG YADVPGSTTK TPSQSSAVSE TGENALKEIR QLQNSKYHNE LRKELLQDSD
ALRRRRGADE SSSSSGSANV QETSGENMNQ AAKYYTNAQE KITEHMLSLT RNLKEQTETA
NRIIRRDTEV VSRSAGMADR NINSLGKEAE KLEQHSKKAY KCWLWLMIAF VIATFIGMVL
FMKIMKKKKS


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