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Vesicle transport through interaction with t-SNAREs homolog 1A (Vesicle transport v-SNARE protein Vti1-like 2) (Vti1-rp2)

 VTI1A_HUMAN             Reviewed;         217 AA.
Q96AJ9; A2A307; B4E137; Q5W0D7;
25-MAR-2003, integrated into UniProtKB/Swiss-Prot.
25-JAN-2012, sequence version 2.
27-SEP-2017, entry version 130.
RecName: Full=Vesicle transport through interaction with t-SNAREs homolog 1A;
AltName: Full=Vesicle transport v-SNARE protein Vti1-like 2;
AltName: Full=Vti1-rp2;
Name=VTI1A;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606 {ECO:0000312|EMBL:AAH17052.1};
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Thymus;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15164054; DOI=10.1038/nature02462;
Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L.,
Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K.,
Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L.,
Taylor A., Battles J., Bird C.P., Ainscough R., Almeida J.P.,
Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J.,
Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J.,
Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D.,
Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S.,
Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L.,
Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S.,
Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L.,
Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J.,
Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M.,
Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S.,
Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M.,
Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A.,
Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T.,
Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I.,
Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T.,
Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M.,
Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W.,
Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H.,
Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L.,
Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K.,
Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T.,
Doucette-Stamm L., Beck S., Smith D.R., Rogers J.;
"The DNA sequence and comparative analysis of human chromosome 10.";
Nature 429:375-381(2004).
[3] {ECO:0000312|EMBL:AAH17052.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Lung;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
FUNCTION.
PubMed=18195106; DOI=10.1083/jcb.200707136;
Ganley I.G., Espinosa E., Pfeffer S.R.;
"A syntaxin 10-SNARE complex distinguishes two distinct transport
routes from endosomes to the trans-Golgi in human cells.";
J. Cell Biol. 180:159-172(2008).
[6]
FUNCTION, AND SUBCELLULAR LOCATION.
PubMed=19138172; DOI=10.1042/BJ20081736;
Flowerdew S.E., Burgoyne R.D.;
"A VAMP7/Vti1a SNARE complex distinguishes a non-conventional traffic
route to the cell surface used by KChIP1 and Kv4 potassium channels.";
Biochem. J. 418:529-540(2009).
[7]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21269460; DOI=10.1186/1752-0509-5-17;
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P.,
Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.;
"Initial characterization of the human central proteome.";
BMC Syst. Biol. 5:17-17(2011).
[8]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=25944712; DOI=10.1002/pmic.201400617;
Vaca Jacome A.S., Rabilloud T., Schaeffer-Reiss C., Rompais M.,
Ayoub D., Lane L., Bairoch A., Van Dorsselaer A., Carapito C.;
"N-terminome analysis of the human mitochondrial proteome.";
Proteomics 15:2519-2524(2015).
-!- FUNCTION: V-SNARE that mediates vesicle transport pathways through
interactions with t-SNAREs on the target membrane. These
interactions are proposed to mediate aspects of the specificity of
vesicle trafficking and to promote fusion of the lipid bilayers.
Involved in vesicular transport from the late endosomes to the
trans-Golgi network. Along with VAMP7, involved in an non-
conventional RAB1-dependent traffic route to the cell surface used
by KCNIP1 and KCND2. May be involved in increased cytokine
secretion associated with cellular senescence.
{ECO:0000269|PubMed:18195106, ECO:0000269|PubMed:19138172}.
-!- SUBUNIT: Interacts with distinct SNARE complexes that contain
either STX5 or STX6. Interacts with NAPA and, to a lesser extent,
with NAPG. Identified in a complex containing STX6, STX12, VAMP4
and VTI1A. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Cytoplasmic vesicle
{ECO:0000269|PubMed:19138172}. Golgi apparatus membrane
{ECO:0000250}; Single-pass type IV membrane protein {ECO:0000250}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=2;
IsoId=Q96AJ9-2; Sequence=Displayed;
Name=1;
IsoId=Q96AJ9-1; Sequence=VSP_039848;
Note=No experimental confirmation available.;
-!- SIMILARITY: Belongs to the VTI1 family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AK303646; BAG64649.1; -; mRNA.
EMBL; AL139120; CAH71781.2; -; Genomic_DNA.
EMBL; AC022018; CAH71781.2; JOINED; Genomic_DNA.
EMBL; AL158212; CAH71781.2; JOINED; Genomic_DNA.
EMBL; AL139120; CAM15142.1; -; Genomic_DNA.
EMBL; AC022018; CAM15142.1; JOINED; Genomic_DNA.
EMBL; AL158212; CAM22437.1; -; Genomic_DNA.
EMBL; AC022018; CAM22437.1; JOINED; Genomic_DNA.
EMBL; AL139120; CAM22437.1; JOINED; Genomic_DNA.
EMBL; CH471066; EAW49524.1; -; Genomic_DNA.
EMBL; CH471066; EAW49525.1; -; Genomic_DNA.
EMBL; BC017052; AAH17052.1; -; mRNA.
CCDS; CCDS7575.2; -. [Q96AJ9-2]
RefSeq; NP_001305132.1; NM_001318203.1.
RefSeq; NP_001305134.1; NM_001318205.1.
RefSeq; NP_660207.2; NM_145206.3. [Q96AJ9-2]
RefSeq; XP_005269601.1; XM_005269544.4. [Q96AJ9-1]
UniGene; Hs.194554; -.
ProteinModelPortal; Q96AJ9; -.
SMR; Q96AJ9; -.
BioGrid; 126789; 14.
CORUM; Q96AJ9; -.
DIP; DIP-44223N; -.
IntAct; Q96AJ9; 4.
MINT; MINT-3050814; -.
STRING; 9606.ENSP00000376792; -.
iPTMnet; Q96AJ9; -.
PhosphoSitePlus; Q96AJ9; -.
BioMuta; VTI1A; -.
DMDM; 374095459; -.
EPD; Q96AJ9; -.
PaxDb; Q96AJ9; -.
PeptideAtlas; Q96AJ9; -.
PRIDE; Q96AJ9; -.
DNASU; 143187; -.
Ensembl; ENST00000393077; ENSP00000376792; ENSG00000151532. [Q96AJ9-2]
Ensembl; ENST00000432306; ENSP00000395017; ENSG00000151532. [Q96AJ9-1]
GeneID; 143187; -.
KEGG; hsa:143187; -.
UCSC; uc001kzz.5; human. [Q96AJ9-2]
CTD; 143187; -.
DisGeNET; 143187; -.
EuPathDB; HostDB:ENSG00000151532.13; -.
GeneCards; VTI1A; -.
H-InvDB; HIX0023094; -.
HGNC; HGNC:17792; VTI1A.
HPA; HPA054108; -.
MIM; 614316; gene.
neXtProt; NX_Q96AJ9; -.
OpenTargets; ENSG00000151532; -.
PharmGKB; PA134928049; -.
eggNOG; KOG1666; Eukaryota.
eggNOG; ENOG4111J90; LUCA.
GeneTree; ENSGT00530000063466; -.
HOGENOM; HOG000116573; -.
HOVERGEN; HBG104027; -.
InParanoid; Q96AJ9; -.
KO; K08493; -.
OMA; NYEQQYA; -.
OrthoDB; EOG091G0L3Z; -.
PhylomeDB; Q96AJ9; -.
TreeFam; TF312874; -.
Reactome; R-HSA-6811438; Intra-Golgi traffic.
Reactome; R-HSA-6811440; Retrograde transport at the Trans-Golgi-Network.
SIGNOR; Q96AJ9; -.
ChiTaRS; VTI1A; human.
GeneWiki; VTI1A; -.
GenomeRNAi; 143187; -.
PRO; PR:Q96AJ9; -.
Proteomes; UP000005640; Chromosome 10.
Bgee; ENSG00000151532; -.
CleanEx; HS_VTI1A; -.
Genevisible; Q96AJ9; HS.
GO; GO:0005776; C:autophagosome; IDA:ParkinsonsUK-UCL.
GO; GO:0030136; C:clathrin-coated vesicle; ISS:ParkinsonsUK-UCL.
GO; GO:0005829; C:cytosol; IEA:GOC.
GO; GO:0005789; C:endoplasmic reticulum membrane; IBA:GO_Central.
GO; GO:0005768; C:endosome; ISS:ParkinsonsUK-UCL.
GO; GO:0012507; C:ER to Golgi transport vesicle membrane; IBA:GO_Central.
GO; GO:0005794; C:Golgi apparatus; IDA:UniProtKB.
GO; GO:0000139; C:Golgi membrane; TAS:Reactome.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
GO; GO:0031902; C:late endosome membrane; IBA:GO_Central.
GO; GO:0044306; C:neuron projection terminus; ISS:ParkinsonsUK-UCL.
GO; GO:0043025; C:neuronal cell body; ISS:ParkinsonsUK-UCL.
GO; GO:0048471; C:perinuclear region of cytoplasm; ISS:ParkinsonsUK-UCL.
GO; GO:0031201; C:SNARE complex; ISS:ParkinsonsUK-UCL.
GO; GO:0008021; C:synaptic vesicle; ISS:ParkinsonsUK-UCL.
GO; GO:0032588; C:trans-Golgi network membrane; TAS:Reactome.
GO; GO:0005484; F:SNAP receptor activity; IDA:HGNC.
GO; GO:0000149; F:SNARE binding; IBA:GO_Central.
GO; GO:0006914; P:autophagy; IMP:ParkinsonsUK-UCL.
GO; GO:0006888; P:ER to Golgi vesicle-mediated transport; ISS:ParkinsonsUK-UCL.
GO; GO:0090161; P:Golgi ribbon formation; IMP:UniProtKB.
GO; GO:0006896; P:Golgi to vacuole transport; IBA:GO_Central.
GO; GO:0006891; P:intra-Golgi vesicle-mediated transport; IBA:GO_Central.
GO; GO:0006623; P:protein targeting to vacuole; IBA:GO_Central.
GO; GO:0042147; P:retrograde transport, endosome to Golgi; IDA:UniProtKB.
GO; GO:0048280; P:vesicle fusion with Golgi apparatus; ISS:ParkinsonsUK-UCL.
GO; GO:0050882; P:voluntary musculoskeletal movement; IMP:UniProtKB.
InterPro; IPR027027; GOSR2/Membrin/Bos1.
InterPro; IPR010989; SNARE.
InterPro; IPR000727; T_SNARE_dom.
InterPro; IPR007705; Vesicle_trsprt_v-SNARE_N.
Pfam; PF05008; V-SNARE; 1.
PIRSF; PIRSF028865; Membrin-2; 1.
SMART; SM00397; t_SNARE; 1.
SUPFAM; SSF47661; SSF47661; 1.
1: Evidence at protein level;
Alternative splicing; Coiled coil; Complete proteome;
Cytoplasmic vesicle; Golgi apparatus; Membrane; Protein transport;
Reference proteome; Transmembrane; Transmembrane helix; Transport.
CHAIN 1 217 Vesicle transport through interaction
with t-SNAREs homolog 1A.
/FTId=PRO_0000218225.
TOPO_DOM 1 192 Cytoplasmic. {ECO:0000255}.
TRANSMEM 193 213 Helical. {ECO:0000255}.
TOPO_DOM 214 217 Extracellular. {ECO:0000255}.
COILED 31 92 {ECO:0000255}.
COILED 112 178 {ECO:0000255}.
VAR_SEQ 188 217 IIQNRILLVILGIIVVITILMAITFSVRRH -> GCSVKKQ
CNLSLAPKA (in isoform 1).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_039848.
CONFLICT 83 83 K -> E (in Ref. 1; BAG64649).
{ECO:0000305}.
SEQUENCE 217 AA; 25218 MW; 3FE5FE787B5958F0 CRC64;
MSSDFEGYEQ DFAVLTAEIT SKIARVPRLP PDEKKQMVAN VEKQLEEAKE LLEQMDLEVR
EIPPQSRGMY SNRMRSYKQE MGKLETDFKR SRIAYSDEVR NELLGDDGNS SENQRAHLLD
NTERLERSSR RLEAGYQIAV ETEQIGQEML ENLSHDREKI QRARERLRET DANLGKSSRI
LTGMLRRIIQ NRILLVILGI IVVITILMAI TFSVRRH


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