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Voltage-dependent L-type calcium channel subunit alpha

 F1R1T3_DANRE            Unreviewed;      2168 AA.
F1R1T3;
03-MAY-2011, integrated into UniProtKB/TrEMBL.
03-MAY-2011, sequence version 1.
05-JUL-2017, entry version 47.
RecName: Full=Voltage-dependent L-type calcium channel subunit alpha {ECO:0000256|RuleBase:RU003808};
Name=cacna1c {ECO:0000313|Ensembl:ENSDARP00000031067,
ECO:0000313|ZFIN:ZDB-GENE-020129-1};
Danio rerio (Zebrafish) (Brachydanio rerio).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
Cyprinidae; Danio.
NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000031067, ECO:0000313|Proteomes:UP000000437};
[1] {ECO:0000313|Ensembl:ENSDARP00000031067}
IDENTIFICATION.
STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000031067};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
[2] {ECO:0000313|Ensembl:ENSDARP00000031067, ECO:0000313|Proteomes:UP000000437}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000031067,
ECO:0000313|Proteomes:UP000000437};
PubMed=23594743; DOI=10.1038/nature12111;
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
Saunders D., Wallis J., Babbage A., Hammond S.,
Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
Stemple D.L.;
"The zebrafish reference genome sequence and its relationship to the
human genome.";
Nature 496:498-503(2013).
-!- FUNCTION: Voltage-sensitive calcium channels (VSCC) mediate the
entry of calcium ions into excitable cells and are also involved
in a variety of calcium-dependent processes, including muscle
contraction, hormone or neurotransmitter release, gene expression,
cell motility, cell division and cell death. The isoform alpha-1C
gives rise to L-type calcium currents. Long-lasting (L-type)
calcium channels belong to the 'high-voltage activated' (HVA)
group. They are blocked by dihydropyridines (DHP),
phenylalkylamines, benzothiazepines, and by omega-agatoxin-IIIA
(omega-Aga-IIIA). They are however insensitive to omega-conotoxin-
GVIA (omega-CTx-GVIA) and omega-agatoxin-IVA (omega-Aga-IVA).
Calcium channels containing the alpha-1C subunit play an important
role in excitation-contraction coupling in the heart. Binding of
calmodulin or CABP1 at the same regulatory sites results in an
opposit effects on the channel function.
{ECO:0000256|RuleBase:RU003808}.
-!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU003808};
Multi-pass membrane protein {ECO:0000256|RuleBase:RU003808}.
-!- SIMILARITY: Belongs to the calcium channel alpha-1 subunit (TC
1.A.1.11) family. {ECO:0000256|RuleBase:RU003808}.
-!- CAUTION: The sequence shown here is derived from an Ensembl
automatic analysis pipeline and should be considered as
preliminary data. {ECO:0000313|Ensembl:ENSDARP00000031067}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; BX248410; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BX649380; -; NOT_ANNOTATED_CDS; Genomic_DNA.
PaxDb; F1R1T3; -.
Ensembl; ENSDART00000028856; ENSDARP00000031067; ENSDARG00000008398.
ZFIN; ZDB-GENE-020129-1; cacna1c.
eggNOG; KOG2301; Eukaryota.
eggNOG; ENOG410XNP6; LUCA.
GeneTree; ENSGT00830000128247; -.
Reactome; R-DRE-422356; Regulation of insulin secretion.
Reactome; R-DRE-5576892; Phase 0 - rapid depolarisation.
Reactome; R-DRE-5576893; Phase 2 - plateau phase.
Proteomes; UP000000437; Chromosome 4.
Bgee; ENSDARG00000008398; -.
ExpressionAtlas; F1R1T3; baseline.
GO; GO:0005891; C:voltage-gated calcium channel complex; IC:ZFIN.
GO; GO:0005245; F:voltage-gated calcium channel activity; IDA:ZFIN.
GO; GO:0070509; P:calcium ion import; IMP:ZFIN.
GO; GO:0006816; P:calcium ion transport; IMP:ZFIN.
GO; GO:0048701; P:embryonic cranial skeleton morphogenesis; IMP:ZFIN.
GO; GO:0001947; P:heart looping; IMP:ZFIN.
GO; GO:0003007; P:heart morphogenesis; IMP:ZFIN.
GO; GO:0001822; P:kidney development; IMP:ZFIN.
GO; GO:0003301; P:physiological cardiac muscle hypertrophy; IMP:ZFIN.
GO; GO:0008016; P:regulation of heart contraction; IMP:ZFIN.
InterPro; IPR031688; CAC1F_C.
InterPro; IPR031649; GPHH_dom.
InterPro; IPR005821; Ion_trans_dom.
InterPro; IPR014873; VDCC_a1su_IQ.
InterPro; IPR005451; VDCC_L_a1csu.
InterPro; IPR005446; VDCC_L_a1su.
InterPro; IPR002077; VDCCAlpha1.
PANTHER; PTHR10037:SF240; PTHR10037:SF240; 1.
Pfam; PF08763; Ca_chan_IQ; 1.
Pfam; PF16885; CAC1F_C; 1.
Pfam; PF16905; GPHH; 1.
Pfam; PF00520; Ion_trans; 4.
PRINTS; PR00167; CACHANNEL.
PRINTS; PR01630; LVDCCALPHA1.
PRINTS; PR01635; LVDCCALPHA1C.
SMART; SM01062; Ca_chan_IQ; 1.
3: Inferred from homology;
Calcium {ECO:0000256|RuleBase:RU003808};
Calcium channel {ECO:0000256|RuleBase:RU003808};
Calcium transport {ECO:0000256|RuleBase:RU003808};
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000437};
Ion channel {ECO:0000256|RuleBase:RU003808};
Ion transport {ECO:0000256|RuleBase:RU003808};
Membrane {ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000000437};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius};
Transport {ECO:0000256|RuleBase:RU003808};
Voltage-gated channel {ECO:0000256|RuleBase:RU003808}.
TRANSMEM 138 155 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 175 194 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 206 222 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 278 300 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 362 383 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 395 417 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 538 555 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 575 598 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 667 686 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 737 764 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 908 930 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 950 971 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1029 1058 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1156 1181 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1232 1250 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1262 1285 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1379 1397 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1469 1493 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 1627 1661 Ca_chan_IQ. {ECO:0000259|SMART:SM01062}.
COILED 767 793 {ECO:0000256|SAM:Coils}.
SEQUENCE 2168 AA; 243243 MW; A77AA30652C4179E CRC64;
MVNESKNMYI PEDTLENHQG SNYSSPSLAP VPSLNEDEHV GGGGGVLGLA PEHIPTPGAP
LSWQAAIDAA RQAKLMGTTG APISTASSTQ RKRQHYTKPK KQASTASTRP PRALLCLTLK
NPIRRACINI VEWKPFEIII LMTIFANCVA LAVYIPFPED DSNATNSNLE RVEYLFLIIF
TVEAFLKVIA YGLLCHPNAY LRNGWNLLDF IIVVVGLFSA ILEQATKGDG GTSMGGKAAG
FDVKALRAFR VLRPLRLVSG VPSLQVVLNS IIKAMVPLLH IALLVLFVII IYAIIGLELF
MGKMHRTCFF YKDGHKGHIA EEKPAPCAPS SAHGRHCSPP NITQCMMGWE GPNDGITNFD
NFAFAMLTVF QCITMEGWTD VLYWMQDAMG YELPWVYFVS LVIFGSFFVL NLVLGVLSGE
FSKEREKAKA RGDFQKLREK QQLEEDLKGY LDWITQAEDI DPENDDEGLD DDKPRNLSMP
ASENESVNTD NAPAGDMEGE TCCTRMANRI SKSKFSRYSR RWNRLCRRKC RAAVKSNVFY
WLVIFLVFLN TLTIASEHHQ QPEWLTNVQD IANKVLLALF TGEMLLKMYS LGLQAYFVSL
FNRFDSFVVC GGILETILVE TKIMSPLGIS VLRCVRLLRI FKITRYWNSL SNLVASLLNS
VRSIASLLLL LFLFIIIFSL LGMQLFGGKF NFDETRRSTF DNFPQSLLTV FQILTGEDWN
SVMYDGIMAY GGPSFPGMLV CIYFIILFIC GNYILLNVFL AIAVDNLADA ESLTSAQKEE
EEEKERKKLA RTASPEKRQN SEKPPLEDEK KEEKIELKSI TSDGETPTAT KINIDEYTGE
DNEEKNPYPV NDFPAGEDDE EEPEMPVGPR PRPLSDIQLK EKAVPMPQAK AFFIFSPSNK
FRVLCHKIVN HNIFTNLILF FILLSSISLA AEDPVKNDSF RNQILGYADY VFTGIFTIEI
ILKMTAYGAF LHKGSFCRNY FNILDLVVVS VSLISSGIQS SAINVVKILR VLRVLRPLRA
INRAKGLKHV VQCVFVAIRT IGNIVIVTSL LQFMFACIGV QLFKGKFFYC TDTSKQTQAE
CRGAYILYKD GNVGKPEKAQ RSWENSDFNF DDVLQGMMAL FAVSTFEGWP GLLYRAIDSH
AEDVGPIYNY RVVISIFFII YIIIIAFFMM NIFVGFVIVT FQEQGEQEYK NCELDKNQRQ
CVEYALKARP LRRYIPKNPY QYKVWYVVNS TYFEYLMFTL ILLNTICLAM QHHGQSQSFN
KAMNILNMLF TGLFTVEMIL KLIAFKPRHY FVDAWNTFDA LIVVGSVVDI AITEVNPADP
SSSPPSSVVR PMGLQNTEDN ARISITFFRL FRVMRLVKLL SRGEGIRTLL WTFIKSFQAL
PYVALLIVML FFIYAVIGMQ MFGKIALRDN SQINRNNNFQ TFPQAVLLLF RCATGEAWQE
IMLACSPNRP CEKGSEINHS SEDCGSHFAI FYFVSFYMLC AFLIINLFVA VIMDNFDYLT
RDWSILGPHH LDEFKRIWAE YDPEAKGRIK HLDVVTLLRR IQPPLGFGKL CPHRVACKRL
VSMNMPLNSD GTVMFNATLF ALVRTALRIK TEGNLEQANE ELRAIVKKIW KRTSMKLLDQ
VVPPAGDDEV TVGKFYATFL IQEYFRKFKK RKEQGLVAKI PPKTALSLQA GLRTLHDMGP
EIRRAISGDL TVEEELERAM KETVCAASED DIFRRSGGLF GNHVNYYHQS DGHVSFPQSF
TTQRPLHISK SGSPGEAESP SHQKLVDSTF TPSSYSSSGS NANINNANNT AIGHRYPKPT
VSTVDGQTGP PLTTIPLPRP TWCFPNKSSD SSDSRLPIIR REEASTDETY DETFLDERDQ
AMLSMDMLEF QDEESKQLAP MVEAEVGEER RPWQSPRRRA FLCPTALGRR SSFHLECLRK
HNRPDVSQKT ALPLHLVHHQ ALAVAGLSPL LRRSHSPTLF TRLCSTPPAS PSGRSGGGPC
YQPVPSLRLE GSGSYEKLNS SMPSVNCSSW YSDSNGNHSG RAQRPVSLTV PPVTRRDSIS
LAHGSAGSLV EAVLISEGLG RYAHDPSFIQ VAKQEIAEAC DMTMEEMENA ADNILNANAP
PNANGNLLPF IQCRDTGSQE SRCSLSLGLS PATGSDGALE AELEESEGAG QRNSPLMEDE
DMECVTSL


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