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WASH complex subunit 3 (Coiled-coil domain-containing protein 53)

 WASC3_HUMAN             Reviewed;         194 AA.
Q9Y3C0; B2RC74; Q53FF0; Q6IAI4; Q96QK0;
30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
01-NOV-1999, sequence version 1.
12-SEP-2018, entry version 133.
RecName: Full=WASH complex subunit 3 {ECO:0000312|HGNC:HGNC:24256};
AltName: Full=Coiled-coil domain-containing protein 53;
Name=WASHC3 {ECO:0000312|HGNC:HGNC:24256};
ORFNames=AD-016, CCDC53, CGI-116, x0009;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Adrenal gland;
PubMed=10931946; DOI=10.1073/pnas.160270997;
Hu R.-M., Han Z.-G., Song H.-D., Peng Y.-D., Huang Q.-H., Ren S.-X.,
Gu Y.-J., Huang C.-H., Li Y.-B., Jiang C.-L., Fu G., Zhang Q.-H.,
Gu B.-W., Dai M., Mao Y.-F., Gao G.-F., Rong R., Ye M., Zhou J.,
Xu S.-H., Gu J., Shi J.-X., Jin W.-R., Zhang C.-K., Wu T.-M.,
Huang G.-Y., Chen Z., Chen M.-D., Chen J.-L.;
"Gene expression profiling in the human hypothalamus-pituitary-adrenal
axis and full-length cDNA cloning.";
Proc. Natl. Acad. Sci. U.S.A. 97:9543-9548(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
PubMed=10810093; DOI=10.1101/gr.10.5.703;
Lai C.-H., Chou C.-Y., Ch'ang L.-Y., Liu C.-S., Lin W.-C.;
"Identification of novel human genes evolutionarily conserved in
Caenorhabditis elegans by comparative proteomics.";
Genome Res. 10:703-713(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.;
"Cloning of human full open reading frames in Gateway(TM) system entry
vector (pDONR201).";
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Placenta;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Testis;
Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y.,
Tanaka A., Yokoyama S.;
Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Prostate;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[8]
FUNCTION OF THE WASH COMPLEX, AND IDENTIFICATION IN THE WASH COMPLEX.
PubMed=19922875; DOI=10.1016/j.devcel.2009.09.010;
Derivery E., Sousa C., Gautier J.J., Lombard B., Loew D., Gautreau A.;
"The Arp2/3 activator WASH controls the fission of endosomes through a
large multiprotein complex.";
Dev. Cell 17:712-723(2009).
[9]
IDENTIFICATION IN THE WASH CORE COMPLEX, AND FUNCTION OF THE WASH CORE
COMPLEX.
PubMed=20498093; DOI=10.1073/pnas.0913293107;
Jia D., Gomez T.S., Metlagel Z., Umetani J., Otwinowski Z.,
Rosen M.K., Billadeau D.D.;
"WASH and WAVE actin regulators of the Wiskott-Aldrich syndrome
protein (WASP) family are controlled by analogous structurally related
complexes.";
Proc. Natl. Acad. Sci. U.S.A. 107:10442-10447(2010).
[10]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21269460; DOI=10.1186/1752-0509-5-17;
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P.,
Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.;
"Initial characterization of the human central proteome.";
BMC Syst. Biol. 5:17-17(2011).
[11]
ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, AND IDENTIFICATION BY
MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22814378; DOI=10.1073/pnas.1210303109;
Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A.,
Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E.,
Timmerman E., Prieto J., Arnesen T., Sherman F., Gevaert K.,
Aldabe R.;
"N-terminal acetylome analyses and functional insights of the N-
terminal acetyltransferase NatB.";
Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012).
[12]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014;
Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D.,
Wang L., Ye M., Zou H.;
"An enzyme assisted RP-RPLC approach for in-depth analysis of human
liver phosphoproteome.";
J. Proteomics 96:253-262(2014).
[13]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=25944712; DOI=10.1002/pmic.201400617;
Vaca Jacome A.S., Rabilloud T., Schaeffer-Reiss C., Rompais M.,
Ayoub D., Lane L., Bairoch A., Van Dorsselaer A., Carapito C.;
"N-terminome analysis of the human mitochondrial proteome.";
Proteomics 15:2519-2524(2015).
-!- FUNCTION: Acts at least in part as component of the WASH core
complex whose assembly at the surface of endosomes seems to
inhibit WASH nucleation-promoting factor (NPF) activity in
recruiting and activating the Arp2/3 complex to induce actin
polymerization, and which is involved in regulation of the fission
of tubules that serve as transport intermediates during endosome
sorting (PubMed:19922875, PubMed:20498093).
{ECO:0000269|PubMed:19922875, ECO:0000269|PubMed:20498093}.
-!- SUBUNIT: Component of the WASH core complex also described as WASH
regulatory complex (SHRC) composed of WASH (WASHC1, WASH2P or
WASH3P), WASHC2 (WASHC2A or WASHC2C), WASHC3, WASHC4 and WASHC5.
The WASH core complex associates via WASHC2 with the F-actin-
capping protein dimer (formed by CAPZA1, CAPZA2 or CAPZA3 and
CAPZB) in a transient or substoichiometric manner which was
initially described as WASH complex. {ECO:0000269|PubMed:19922875,
ECO:0000269|PubMed:20498093}.
-!- INTERACTION:
A8K2R3:-; NbExp=3; IntAct=EBI-712969, EBI-9977437;
Q9UL45:BLOC1S6; NbExp=5; IntAct=EBI-712969, EBI-465781;
Q8NCU1:CCDC197; NbExp=4; IntAct=EBI-712969, EBI-750686;
Q8TD31-3:CCHCR1; NbExp=5; IntAct=EBI-712969, EBI-10175300;
Q53EZ4:CEP55; NbExp=5; IntAct=EBI-712969, EBI-747776;
Q96EV8:DTNBP1; NbExp=3; IntAct=EBI-712969, EBI-465804;
Q08379:GOLGA2; NbExp=5; IntAct=EBI-712969, EBI-618309;
Q96CS2:HAUS1; NbExp=8; IntAct=EBI-712969, EBI-2514791;
O75506:HSBP1; NbExp=10; IntAct=EBI-712969, EBI-748664;
Q8IY31:IFT20; NbExp=3; IntAct=EBI-712969, EBI-744203;
O60341:KDM1A; NbExp=4; IntAct=EBI-712969, EBI-710124;
Q9Y448:KNSTRN; NbExp=4; IntAct=EBI-712969, EBI-373334;
Q96EZ8:MCRS1; NbExp=10; IntAct=EBI-712969, EBI-348259;
Q7L9L4:MOB1B; NbExp=3; IntAct=EBI-712969, EBI-2558745;
O14777:NDC80; NbExp=6; IntAct=EBI-712969, EBI-715849;
P37198:NUP62; NbExp=7; IntAct=EBI-712969, EBI-347978;
Q96CV9:OPTN; NbExp=15; IntAct=EBI-712969, EBI-748974;
Q96AQ6:PBXIP1; NbExp=3; IntAct=EBI-712969, EBI-740845;
Q15154:PCM1; NbExp=4; IntAct=EBI-712969, EBI-741421;
O00560:SDCBP; NbExp=5; IntAct=EBI-712969, EBI-727004;
Q8N0S2:SYCE1; NbExp=3; IntAct=EBI-712969, EBI-6872807;
P40222:TXLNA; NbExp=5; IntAct=EBI-712969, EBI-359793;
Q8N3L3:TXLNB; NbExp=3; IntAct=EBI-712969, EBI-6116822;
-!- SUBCELLULAR LOCATION: Early endosome {ECO:0000305}.
-!- SIMILARITY: Belongs to the CCDC53 family. {ECO:0000305}.
-!- CAUTION: The function of the WASH complex is debated. One study
using partially purified samples reported a nucleation-promoting
factor (NPF) activity (PubMed:19922875). In another study, the
reconstituted and highly purified recombinant WASH core complex
did not show activity toward Arp2/3 complex suggesting a rather
inhibitory role towards WASH NPF activity (PubMed:20498093).
-----------------------------------------------------------------------
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EMBL; AF155655; AAF67012.1; -; mRNA.
EMBL; AF151874; AAD34111.1; -; mRNA.
EMBL; CR457171; CAG33452.1; -; mRNA.
EMBL; AK223339; BAD97059.1; -; mRNA.
EMBL; AK314970; BAG37471.1; -; mRNA.
EMBL; CH471054; EAW97687.1; -; Genomic_DNA.
EMBL; BC010889; AAH10889.1; -; mRNA.
CCDS; CCDS44959.1; -.
RefSeq; NP_057137.1; NM_016053.3.
UniGene; Hs.405692; -.
ProteinModelPortal; Q9Y3C0; -.
BioGrid; 119225; 77.
ComplexPortal; CPX-1163; WASH complex, variant WASHC1/WASHC2C.
ComplexPortal; CPX-1168; WASH complex, variant WASH2P/WASHC2C.
ComplexPortal; CPX-1169; WASH complex, variant WASH3P/WASHC2C.
ComplexPortal; CPX-1170; WASH complex, variant WASH4P/WASHC2C.
ComplexPortal; CPX-1171; WASH complex, variant WASH6P/WASHC2C.
ComplexPortal; CPX-1172; WASH complex, variant WASHC1/WASHC2A.
ComplexPortal; CPX-1173; WASH complex, variant WASH2P/WASHC2A.
ComplexPortal; CPX-1174; WASH complex, variant WASH3P/WASHC2A.
ComplexPortal; CPX-1175; WASH complex, variant WASH4P/WASHC2A.
ComplexPortal; CPX-1176; WASH complex, variant WASH6P/WASHC2A.
CORUM; Q9Y3C0; -.
IntAct; Q9Y3C0; 62.
MINT; Q9Y3C0; -.
STRING; 9606.ENSP00000240079; -.
iPTMnet; Q9Y3C0; -.
PhosphoSitePlus; Q9Y3C0; -.
BioMuta; CCDC53; -.
DMDM; 6831732; -.
EPD; Q9Y3C0; -.
MaxQB; Q9Y3C0; -.
PaxDb; Q9Y3C0; -.
PeptideAtlas; Q9Y3C0; -.
PRIDE; Q9Y3C0; -.
ProteomicsDB; 86009; -.
DNASU; 51019; -.
Ensembl; ENST00000240079; ENSP00000240079; ENSG00000120860.
GeneID; 51019; -.
KEGG; hsa:51019; -.
UCSC; uc010svw.3; human.
CTD; 51019; -.
EuPathDB; HostDB:ENSG00000120860.10; -.
GeneCards; WASHC3; -.
HGNC; HGNC:24256; WASHC3.
HPA; HPA038338; -.
HPA; HPA038339; -.
neXtProt; NX_Q9Y3C0; -.
OpenTargets; ENSG00000120860; -.
PharmGKB; PA142672169; -.
eggNOG; KOG4496; Eukaryota.
eggNOG; ENOG4111KKV; LUCA.
GeneTree; ENSGT00390000014084; -.
HOGENOM; HOG000006526; -.
HOVERGEN; HBG009789; -.
InParanoid; Q9Y3C0; -.
KO; K18463; -.
OMA; QKRILAF; -.
OrthoDB; EOG091G0Y6M; -.
PhylomeDB; Q9Y3C0; -.
TreeFam; TF318955; -.
ChiTaRS; CCDC53; human.
GeneWiki; CCDC53; -.
GenomeRNAi; 51019; -.
PRO; PR:Q9Y3C0; -.
Proteomes; UP000005640; Chromosome 12.
Bgee; ENSG00000120860; Expressed in 226 organ(s), highest expression level in right testis.
CleanEx; HS_CCDC53; -.
ExpressionAtlas; Q9Y3C0; baseline and differential.
Genevisible; Q9Y3C0; HS.
GO; GO:0005769; C:early endosome; IEA:UniProtKB-SubCell.
GO; GO:0071203; C:WASH complex; IDA:UniProtKB.
GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
InterPro; IPR019309; WASHC3.
PANTHER; PTHR13015; PTHR13015; 2.
Pfam; PF10152; CCDC53; 1.
1: Evidence at protein level;
Acetylation; Coiled coil; Complete proteome; Endosome;
Protein transport; Reference proteome; Transport.
CHAIN 1 194 WASH complex subunit 3.
/FTId=PRO_0000076201.
COILED 46 74 {ECO:0000255}.
MOD_RES 1 1 N-acetylmethionine.
{ECO:0000244|PubMed:22814378}.
CONFLICT 81 81 D -> G (in Ref. 5; BAD97059).
{ECO:0000305}.
CONFLICT 110 110 N -> S (in Ref. 7; AAH10889).
{ECO:0000305}.
SEQUENCE 194 AA; 21173 MW; B0CCF1AE76CDA6D2 CRC64;
MDEDGLPLMG SGIDLTKVPA IQQKRTVAFL NQFVVHTVQF LNRFSTVCEE KLADLSLRIQ
QIETTLNILD AKLSSIPGLD DVTVEVSPLN VTSVTNGAHP EATSEQPQQN STQDSGLQES
EVSAENILTV AKDPRYARYL KMVQVGVPVM AIRNKMISEG LDPDLLERPD APVPDGESEK
TVEESSDSES SFSD


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