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WD repeat-containing protein JIP5 (Jumonji domain-interacting protein 5)

 JIP5_YEAST              Reviewed;         492 AA.
Q06214; D6W4H0;
31-OCT-2006, integrated into UniProtKB/Swiss-Prot.
20-MAY-2008, sequence version 2.
22-NOV-2017, entry version 129.
RecName: Full=WD repeat-containing protein JIP5;
AltName: Full=Jumonji domain-interacting protein 5;
Name=JIP5; OrderedLocusNames=YPR169W;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169875;
Bussey H., Storms R.K., Ahmed A., Albermann K., Allen E., Ansorge W.,
Araujo R., Aparicio A., Barrell B.G., Badcock K., Benes V.,
Botstein D., Bowman S., Brueckner M., Carpenter J., Cherry J.M.,
Chung E., Churcher C.M., Coster F., Davis K., Davis R.W.,
Dietrich F.S., Delius H., DiPaolo T., Dubois E., Duesterhoeft A.,
Duncan M., Floeth M., Fortin N., Friesen J.D., Fritz C., Goffeau A.,
Hall J., Hebling U., Heumann K., Hilbert H., Hillier L.W.,
Hunicke-Smith S., Hyman R.W., Johnston M., Kalman S., Kleine K.,
Komp C., Kurdi O., Lashkari D., Lew H., Lin A., Lin D., Louis E.J.,
Marathe R., Messenguy F., Mewes H.-W., Mirtipati S., Moestl D.,
Mueller-Auer S., Namath A., Nentwich U., Oefner P., Pearson D.,
Petel F.X., Pohl T.M., Purnelle B., Rajandream M.A., Rechmann S.,
Rieger M., Riles L., Roberts D., Schaefer M., Scharfe M., Scherens B.,
Schramm S., Schroeder M., Sdicu A.-M., Tettelin H., Urrestarazu L.A.,
Ushinsky S., Vierendeels F., Vissers S., Voss H., Walsh S.V.,
Wambutt R., Wang Y., Wedler E., Wedler H., Winnett E., Zhong W.-W.,
Zollner A., Vo D.H., Hani J.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI.";
Nature 387:103-105(1997).
[2]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[3]
INTERACTION WITH BRE1.
PubMed=14690591; DOI=10.1016/S1097-2765(03)00476-3;
Hazbun T.R., Malmstroem L., Anderson S., Graczyk B.J., Fox B.,
Riffle M., Sundin B.A., Aranda J.D., McDonald W.H., Chiu C.-H.,
Snydsman B.E., Bradley P., Muller E.G.D., Fields S., Baker D.,
Yates J.R. III, Davis T.N.;
"Assigning function to yeast proteins by integration of
technologies.";
Mol. Cell 12:1353-1365(2003).
[4]
IDENTIFICATION OF PROBABLE INITIATION SITE.
PubMed=12748633; DOI=10.1038/nature01644;
Kellis M., Patterson N., Endrizzi M., Birren B.W., Lander E.S.;
"Sequencing and comparison of yeast species to identify genes and
regulatory elements.";
Nature 423:241-254(2003).
[5]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[6]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[7]
IDENTIFICATION OF PROBABLE INITIATION SITE.
PubMed=15905473; DOI=10.1093/nar/gki583;
Zhang Z., Dietrich F.S.;
"Mapping of transcription start sites in Saccharomyces cerevisiae
using 5' SAGE.";
Nucleic Acids Res. 33:2838-2851(2005).
[8]
INTERACTION WITH BUD27 AND GIS1.
PubMed=17043893; DOI=10.1007/s00438-006-0171-3;
Tronnersjoe S., Hanefalk C., Balciunas D., Hu G.-Z., Nordberg N.,
Muren E., Ronne H.;
"The jmjN and jmjC domains of the yeast zinc finger protein Gis1
interact with 19 proteins involved in transcription, sumoylation and
DNA repair.";
Mol. Genet. Genomics 277:57-70(2007).
-!- SUBUNIT: Interacts with BRE1, BUD27 and GIS1.
{ECO:0000269|PubMed:14690591, ECO:0000269|PubMed:17043893}.
-!- SUBCELLULAR LOCATION: Nucleus, nucleolus
{ECO:0000269|PubMed:14562095}.
-!- MISCELLANEOUS: Present with 7750 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SEQUENCE CAUTION:
Sequence=AAB68156.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; U25840; AAB68156.1; ALT_INIT; Genomic_DNA.
EMBL; BK006949; DAA11586.1; -; Genomic_DNA.
PIR; S59828; S59828.
RefSeq; NP_015495.2; NM_001184266.1.
ProteinModelPortal; Q06214; -.
BioGrid; 36342; 56.
DIP; DIP-3805N; -.
IntAct; Q06214; 3.
MINT; MINT-520098; -.
STRING; 4932.YPR169W; -.
MaxQB; Q06214; -.
PRIDE; Q06214; -.
EnsemblFungi; YPR169W; YPR169W; YPR169W.
GeneID; 856298; -.
KEGG; sce:YPR169W; -.
EuPathDB; FungiDB:YPR169W; -.
SGD; S000006373; JIP5.
HOGENOM; HOG000093386; -.
InParanoid; Q06214; -.
OMA; GAWDDQQ; -.
OrthoDB; EOG092C3RUX; -.
BioCyc; YEAST:G3O-34297-MONOMER; -.
PRO; PR:Q06214; -.
Proteomes; UP000002311; Chromosome XVI.
GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO; GO:0042273; P:ribosomal large subunit biogenesis; IMP:SGD.
GO; GO:0006364; P:rRNA processing; IBA:GO_Central.
Gene3D; 2.130.10.10; -; 1.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
InterPro; IPR036322; WD40_repeat_dom_sf.
SUPFAM; SSF50978; SSF50978; 2.
1: Evidence at protein level;
Complete proteome; Nucleus; Reference proteome; Repeat; WD repeat.
CHAIN 1 492 WD repeat-containing protein JIP5.
/FTId=PRO_0000257817.
REPEAT 127 166 WD 1.
REPEAT 178 217 WD 2.
REPEAT 236 274 WD 3.
REPEAT 276 317 WD 4.
REPEAT 365 405 WD 5.
COMPBIAS 449 488 Lys-rich.
SEQUENCE 492 AA; 55264 MW; 52C8B2B01211B103 CRC64;
MAKSKKKTDV VDSTNLPILE LLSLKAPIFQ SLLHPELPII ITGFGTGHIV CHRYDPAKLQ
SHLDRRRRID TATTGKDAKK GVCPWIRLDI DLETGDLKFV DIEEQQQQKQ TGKDEDLGVK
TLWKTKRHKG SVRAMCFDSK GDNIFSVGSD NVLKKANTMT GKVVKKVNLS SLFNSEEKKN
DKFTKLCASQ THPFILIGDE SGNIHVINSE NLALSNSIRS IHFGDSINDI FHFDKRSAYK
FISLGQTTLA YFDVRDKDAK PNVAGNEDGK ILISDDQEDE VLCGCFVDPE VADTLLCGMG
EGIVTVWKPN KNDLEDQMSR IKISKDESID CIVPTLQDDN CVWCGCSNGN IYKVNAKLGK
VVEIRNHSEL DEVSFVDLDF EYRVVSGGLE NIKIWELSSD DVEENASVES DSDEPLSHSD
EDLSDDTSSD DETTLVGLSK EELLDELDKD LKEDHQEEKE SNSKSVKKRK IMKENNKKKD
LYEHGIKKFD DL


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