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WRKY transcription factor WRKY24 (OsWRKY24)

 WRK24_ORYSJ             Reviewed;         555 AA.
Q6IEQ7; Q7XAA7; Q94D89;
07-SEP-2016, integrated into UniProtKB/Swiss-Prot.
05-JUL-2004, sequence version 1.
25-OCT-2017, entry version 116.
RecName: Full=WRKY transcription factor WRKY24 {ECO:0000303|PubMed:15047897};
Short=OsWRKY24 {ECO:0000303|PubMed:15047897};
Name=WRKY24 {ECO:0000303|PubMed:15047897};
OrderedLocusNames=Os01g0826400 {ECO:0000312|EMBL:BAF06589.1};
ORFNames=OsJ_03928 {ECO:0000312|EMBL:EAZ14002.1},
OSNPB_010826400 {ECO:0000312|EMBL:BAS75019.1};
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
Yao Q., Peng R., Xiong A.;
"Isolation of rice WRKY protein through W-box bait vector by modified
yeast one-hybrid system method.";
Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
DOI=10.1007/BF03185783;
Qiu Y., Jing S., Fu J., Li L., Yu D.;
"Cloning and analysis of expression profile of 13 WRKY genes in
rice.";
Chin. Sci. Bull. 49:2159-2168(2004).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1).
STRAIN=cv. Nipponbare;
PubMed=15047897; DOI=10.1104/pp.103.034967;
Zhang Z.-L., Xie Z., Zou X., Casaretto J., Ho T.-H.D., Shen Q.J.;
"A rice WRKY gene encodes a transcriptional repressor of the
gibberellin signaling pathway in aleurone cells.";
Plant Physiol. 134:1500-1513(2004).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=12447438; DOI=10.1038/nature01184;
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M.,
Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C.,
Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M.,
Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K.,
Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I.,
Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y.,
Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M.,
Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K.,
Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y.,
Yano M., Jiang J., Gojobori T.;
"The genome sequence and structure of rice chromosome 1.";
Nature 420:312-316(2002).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[6]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=18089549; DOI=10.1093/nar/gkm978;
The rice annotation project (RAP);
"The rice annotation project database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[7]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[9]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Nipponbare;
PubMed=12869764; DOI=10.1126/science.1081288;
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from
japonica rice.";
Science 301:376-379(2003).
[10]
FUNCTION, INDUCTION BY ABSCISIC ACID AND GIBBERELLIC ACID, TISSUE
SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
PubMed=15618416; DOI=10.1104/pp.104.054312;
Xie Z., Zhang Z.-L., Zou X., Huang J., Ruas P., Thompson D.,
Shen Q.J.;
"Annotations and functional analyses of the rice WRKY gene superfamily
reveal positive and negative regulators of abscisic acid signaling in
aleurone cells.";
Plant Physiol. 137:176-189(2005).
[11]
FUNCTION, DEVELOPMENTAL STAGE, INDUCTION BY ABSCISIC ACID, AND
SUBCELLULAR LOCATION.
STRAIN=cv. M-104, and cv. Tainung 67;
PubMed=19199048; DOI=10.1007/s11103-009-9463-4;
Zhang Z.L., Shin M., Zou X., Huang J., Ho T.H., Shen Q.J.;
"A negative regulator encoded by a rice WRKY gene represses both
abscisic acid and gibberellins signaling in aleurone cells.";
Plant Mol. Biol. 70:139-151(2009).
[12]
FUNCTION, AND TISSUE SPECIFICITY.
STRAIN=cv. Nipponbare;
PubMed=26025535; DOI=10.1016/j.plantsci.2015.04.014;
Zhang L., Gu L., Ringler P., Smith S., Rushton P.J., Shen Q.J.;
"Three WRKY transcription factors additively repress abscisic acid and
gibberellin signaling in aleurone cells.";
Plant Sci. 236:214-222(2015).
-!- FUNCTION: Transcription activator (PubMed:26025535). Interacts
specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently
occurring elicitor-responsive cis-acting element (PubMed:19199048,
PubMed:26025535). Negative regulator of both gibberellic acid (GA)
and abscisic acid (ABA) signaling in aleurone cells, probably by
interfering with GAM1, via the specific repression of GA- and ABA-
induced promoters (PubMed:15618416, PubMed:19199048,
PubMed:26025535). {ECO:0000269|PubMed:15618416,
ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00223, ECO:0000269|PubMed:19199048}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q6IEQ7-1; Sequence=Displayed;
Name=2;
IsoId=Q6IEQ7-2; Sequence=VSP_058455;
-!- TISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416).
Mostly expressed in aleurone layers and leaves, and, to a lower
extent, in roots, panicles and embryos (PubMed:26025535).
{ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
-!- DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and
embryos. Levels drop rapidly but transiently in the embryos of
imbibed seeds. {ECO:0000269|PubMed:19199048}.
-!- INDUCTION: Induced by abscisic acid (ABA) in aleurone cells,
embryos, roots and leaves (PubMed:15618416, PubMed:19199048).
Slightly down-regulated by gibberellic acid (GA)
(PubMed:15618416). Accumulates in response to jasmonic acid (MeJA)
(By similarity). {ECO:0000250|UniProtKB:Q6B6R4,
ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
-!- DOMAIN: The WRKY domain is required to bind DNA.
{ECO:0000250|UniProtKB:Q6QHD1}.
-!- SIMILARITY: Belongs to the WRKY group II-a family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AY341849; AAQ20908.1; -; mRNA.
EMBL; AY870608; AAW63717.1; -; mRNA.
EMBL; BK005027; DAA05089.1; -; Genomic_DNA.
EMBL; AP003315; BAB61266.1; -; Genomic_DNA.
EMBL; AP008207; BAF06589.1; -; Genomic_DNA.
EMBL; AP014957; BAS75019.1; -; Genomic_DNA.
EMBL; CM000138; EAZ14002.1; -; Genomic_DNA.
EMBL; AK107199; BAG97993.1; -; mRNA.
RefSeq; XP_015619871.1; XM_015764385.1. [Q6IEQ7-1]
UniGene; Os.31521; -.
SMR; Q6IEQ7; -.
STRING; 39947.LOC_Os01g61080.1; -.
PaxDb; Q6IEQ7; -.
PRIDE; Q6IEQ7; -.
EnsemblPlants; OS01T0826400-01; OS01T0826400-01; OS01G0826400. [Q6IEQ7-1]
GeneID; 4327518; -.
Gramene; OS01T0826400-01; OS01T0826400-01; OS01G0826400.
KEGG; osa:4327518; -.
eggNOG; ENOG410IVG2; Eukaryota.
eggNOG; ENOG4112BTF; LUCA.
KO; K13424; -.
OMA; EQRQSYP; -.
OrthoDB; EOG09360C1H; -.
Proteomes; UP000059680; Chromosome 1.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:UniProtKB-KW.
GO; GO:0009740; P:gibberellic acid mediated signaling pathway; IEA:UniProtKB-KW.
GO; GO:0009788; P:negative regulation of abscisic acid-activated signaling pathway; IMP:UniProtKB.
GO; GO:0009938; P:negative regulation of gibberellic acid mediated signaling pathway; IMP:UniProtKB.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:UniProtKB.
GO; GO:0009737; P:response to abscisic acid; IDA:UniProtKB.
GO; GO:0009739; P:response to gibberellin; IDA:UniProtKB.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
Gene3D; 2.20.25.80; -; 2.
InterPro; IPR003657; WRKY_dom.
InterPro; IPR036576; WRKY_dom_sf.
Pfam; PF03106; WRKY; 2.
SMART; SM00774; WRKY; 2.
SUPFAM; SSF118290; SSF118290; 2.
PROSITE; PS50811; WRKY; 2.
2: Evidence at transcript level;
Abscisic acid signaling pathway; Activator; Alternative splicing;
Complete proteome; DNA-binding; Gibberellin signaling pathway;
Nucleus; Reference proteome; Repeat; Transcription;
Transcription regulation.
CHAIN 1 555 WRKY transcription factor WRKY24.
/FTId=PRO_0000436950.
DNA_BIND 214 278 WRKY 1. {ECO:0000255|PROSITE-
ProRule:PRU00223}.
DNA_BIND 379 444 WRKY 2. {ECO:0000255|PROSITE-
ProRule:PRU00223}.
REGION 466 555 Transcription repression of gibberellic
acid (GA)-induced promoters.
{ECO:0000250|UniProtKB:Q6QHD1}.
MOTIF 253 259 Nuclear localization signal.
{ECO:0000303|PubMed:15618416}.
COMPBIAS 36 41 Poly-Gly. {ECO:0000255}.
COMPBIAS 163 215 Gln-rich. {ECO:0000255|PROSITE-
ProRule:PRU00006}.
COMPBIAS 455 490 Pro-rich. {ECO:0000255|PROSITE-
ProRule:PRU00015}.
COMPBIAS 492 513 Gly-rich. {ECO:0000255|PROSITE-
ProRule:PRU00008}.
VAR_SEQ 1 198 Missing (in isoform 2).
/FTId=VSP_058455.
SEQUENCE 555 AA; 59306 MW; B1936C9DCB313733 CRC64;
MTTSSSGSVE TSANSRLGTF SFASASFTDL LGGNAGAGGG GVSRYKAMTP PSLPLSPPPV
SPSSFFNSPI GMNQADFLGS PVLLTSSIFP SPTTGAFASQ HFDWRPEVAA AQSADQGGKD
EQRNSYSDFS FQTAPASEEA VRTTTFQPPV PPAPLGDEAY RSQQQQQPWG YQQQPAGMDA
GANAASFGAA PFQATSSEMA PQVQGGGGYS QPQSQRRSSD DGYNWRKYGQ KQVKGSENPR
SYYKCTFPNC PTKKKVERSL DGQITEIVYK GTHNHAKPQN TRRNSGSSAA QVLQSGGDMS
EHSFGGMSGT AATPENSSAS FGDDEIRVGS PRAGNGGGDE FDDDEPDSKR WRKDGDGEGI
SMAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTAGCPVRKH
VERASHDLRA VITTYEGKHN HDVPAARGSA ALYRPAPPAA AATSSHPYLP NQPPPMSYQP
TGPQPYALRP DGFGGQGPFG GVVGGSSFGG FSGFDDARGS YMSQHQQQQR QNDAMHASRA
KEEPGDDMFF QNSLY


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