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White collar 2 protein (WC2)

 WC2_NEUCR               Reviewed;         530 AA.
P78714; Q7RVJ5;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
01-MAY-1997, sequence version 1.
28-FEB-2018, entry version 110.
RecName: Full=White collar 2 protein;
Short=WC2;
Name=wc-2; ORFNames=B13C5.120, NCU00902;
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM
1257 / FGSC 987).
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae;
Neurospora.
NCBI_TaxID=367110;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DNA-BINDING, AND
MUTAGENESIS OF GLY-14 AND GLY-485.
STRAIN=ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987;
PubMed=9009271; DOI=10.1093/emboj/16.1.98;
Linden H., Macino G.;
"White collar 2, a partner in blue-light signal transduction,
controlling expression of light-regulated genes in Neurospora
crassa.";
EMBO J. 16:98-109(1997).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987;
PubMed=12655011; DOI=10.1093/nar/gkg293;
Mannhaupt G., Montrone C., Haase D., Mewes H.-W., Aign V.,
Hoheisel J.D., Fartmann B., Nyakatura G., Kempken F., Maier J.,
Schulte U.;
"What's in the genome of a filamentous fungus? Analysis of the
Neurospora genome sequence.";
Nucleic Acids Res. 31:1944-1954(2003).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987;
PubMed=12712197; DOI=10.1038/nature01554;
Galagan J.E., Calvo S.E., Borkovich K.A., Selker E.U., Read N.D.,
Jaffe D.B., FitzHugh W., Ma L.-J., Smirnov S., Purcell S., Rehman B.,
Elkins T., Engels R., Wang S., Nielsen C.B., Butler J., Endrizzi M.,
Qui D., Ianakiev P., Bell-Pedersen D., Nelson M.A.,
Werner-Washburne M., Selitrennikoff C.P., Kinsey J.A., Braun E.L.,
Zelter A., Schulte U., Kothe G.O., Jedd G., Mewes H.-W., Staben C.,
Marcotte E., Greenberg D., Roy A., Foley K., Naylor J.,
Stange-Thomann N., Barrett R., Gnerre S., Kamal M., Kamvysselis M.,
Mauceli E.W., Bielke C., Rudd S., Frishman D., Krystofova S.,
Rasmussen C., Metzenberg R.L., Perkins D.D., Kroken S., Cogoni C.,
Macino G., Catcheside D.E.A., Li W., Pratt R.J., Osmani S.A.,
DeSouza C.P.C., Glass N.L., Orbach M.J., Berglund J.A., Voelker R.,
Yarden O., Plamann M., Seiler S., Dunlap J.C., Radford A., Aramayo R.,
Natvig D.O., Alex L.A., Mannhaupt G., Ebbole D.J., Freitag M.,
Paulsen I., Sachs M.S., Lander E.S., Nusbaum C., Birren B.W.;
"The genome sequence of the filamentous fungus Neurospora crassa.";
Nature 422:859-868(2003).
-!- FUNCTION: May function as a transcription factor involved in light
regulation. Binds and affects blue light regulation of the al-3
gene. Wc-1 and wc-2 interact via homologous PAS domains, bind to
promoters of light regulated genes such as frq, and activate
transcription. May bind directly to frq.
{ECO:0000269|PubMed:9009271}.
-!- SUBUNIT: Heterodimer of wc-1 and wc-2 (Potential). Binds to DNA.
{ECO:0000305}.
-!- INTERACTION:
Q01371:wc-1; NbExp=5; IntAct=EBI-2924174, EBI-2922603;
-!- SUBCELLULAR LOCATION: Nucleus.
-!- INDUCTION: By blue light.
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EMBL; Y09119; CAA70336.1; -; Genomic_DNA.
EMBL; BX842682; CAE81996.1; -; Genomic_DNA.
EMBL; CM002236; EAA34583.3; -; Genomic_DNA.
PIR; T46648; T46648.
RefSeq; XP_963819.3; XM_958726.3.
ProteinModelPortal; P78714; -.
SMR; P78714; -.
DIP; DIP-1156N; -.
IntAct; P78714; 3.
MINT; P78714; -.
EnsemblFungi; EAA34583; EAA34583; NCU00902.
GeneID; 3879968; -.
KEGG; ncr:NCU00902; -.
EuPathDB; FungiDB:NCU00902; -.
InParanoid; P78714; -.
OrthoDB; EOG092C35E5; -.
Proteomes; UP000001805; Chromosome 1, Linkage Group I.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0005667; C:transcription factor complex; IBA:GO_Central.
GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0001085; F:RNA polymerase II transcription factor binding; IBA:GO_Central.
GO; GO:0001228; F:transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
CDD; cd00130; PAS; 1.
Gene3D; 3.30.50.10; -; 1.
InterPro; IPR000014; PAS.
InterPro; IPR035965; PAS-like_dom_sf.
InterPro; IPR013655; PAS_fold_3.
InterPro; IPR000679; Znf_GATA.
InterPro; IPR013088; Znf_NHR/GATA.
Pfam; PF00320; GATA; 1.
Pfam; PF08447; PAS_3; 1.
SMART; SM00091; PAS; 1.
SMART; SM00401; ZnF_GATA; 1.
SUPFAM; SSF55785; SSF55785; 1.
TIGRFAMs; TIGR00229; sensory_box; 1.
PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PROSITE; PS50112; PAS; 1.
1: Evidence at protein level;
Activator; Complete proteome; DNA-binding; Metal-binding; Nucleus;
Reference proteome; Repeat; Transcription; Transcription regulation;
Zinc; Zinc-finger.
CHAIN 1 530 White collar 2 protein.
/FTId=PRO_0000083490.
REPEAT 9 12 1.
REPEAT 21 24 2.
REPEAT 25 28 3.
REPEAT 29 32 4.
REPEAT 33 36 5.
REPEAT 37 40 6.
REPEAT 41 44 7.
DOMAIN 162 232 PAS. {ECO:0000255|PROSITE-
ProRule:PRU00140}.
ZN_FING 468 493 GATA-type. {ECO:0000255|PROSITE-
ProRule:PRU00094}.
REGION 9 44 7 X 4 AA repeats of G-[SAT]-G-M.
COMPBIAS 136 141 Poly-Thr.
COMPBIAS 456 461 Poly-Lys.
COMPBIAS 505 511 Poly-Asn.
MUTAGEN 14 14 G->S: In 234W.
{ECO:0000269|PubMed:9009271}.
MUTAGEN 485 485 G->E: In ER33.
{ECO:0000269|PubMed:9009271}.
SEQUENCE 530 AA; 56895 MW; B667BD3171380A18 CRC64;
MSHGQPPPGS SMYGFGAMGM GSGMGSGMGS GMGTGMGTGM GTGMSASQMT SDPQDMMSLL
DTSVFPGFDG MSMSLDVGDS MSNPFTPVSV PPPLPAGNAG PSHVGVCGGH GAPDQLFSPD
DLIATSMSSA GPMIATPTTT TSGPSGGPSS GGGSTLTEFT KRRNWPAKVV EELQDWEHIL
DANGRIKHVS PSVEPLTGYK PPEIIDLFLR DLIHPDDVGV FTAELNEAIA TGSQLRLFYR
FRKKDGNWTI FETVGHAHIA AAKFAPNPQN QSPFCQAVFM MARPYPTKNA GLLDSFLEHK
IENERLKRRI AELRREEQEE QEESHRTWRM SQEGRSDVTP SDDTATQMGM TPFYIPMNAQ
ADVMMPPPSQ PASSLNIALT RENLEGIAGS RPDSIREKML RYEGNHADTI EMLTGLKYQE
GERSHGITTG NASPTLIKGD AGIAIPLDRD PRTGEKKKKI KVAEEYVCTD CGTLDSPEWR
KGPSGPKTLC NACGLRWAKK EKKKNANNNN NGGGIGGHND IHTPMGDHMG


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