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X16 splicing factor, isoform B

 M9PC85_DROME            Unreviewed;       257 AA.
M9PC85;
26-JUN-2013, integrated into UniProtKB/TrEMBL.
26-JUN-2013, sequence version 1.
12-SEP-2018, entry version 47.
SubName: Full=X16 splicing factor, isoform B {ECO:0000313|EMBL:AGB92704.1};
Name=x16 {ECO:0000313|EMBL:AGB92704.1,
ECO:0000313|FlyBase:FBgn0028554};
Synonyms=2 {ECO:0000313|EMBL:AGB92704.1},
30 {ECO:0000313|EMBL:AGB92704.1}, 9G8 {ECO:0000313|EMBL:AGB92704.1},
anon-WO0118547.78 {ECO:0000313|EMBL:AGB92704.1},
CG10203 {ECO:0000313|EMBL:AGB92704.1},
d9G8 {ECO:0000313|EMBL:AGB92704.1},
Dmel\CG10203 {ECO:0000313|EMBL:AGB92704.1},
Dx16 {ECO:0000313|EMBL:AGB92704.1},
dx16 {ECO:0000313|EMBL:AGB92704.1},
Dxl6 {ECO:0000313|EMBL:AGB92704.1},
dxl6 {ECO:0000313|EMBL:AGB92704.1},
l(2)k00230 {ECO:0000313|EMBL:AGB92704.1},
RBP1-like {ECO:0000313|EMBL:AGB92704.1},
TN166 {ECO:0000313|EMBL:AGB92704.1},
X16 {ECO:0000313|EMBL:AGB92704.1}, XL6 {ECO:0000313|EMBL:AGB92704.1},
Xl6 {ECO:0000313|EMBL:AGB92704.1}, xl6 {ECO:0000313|EMBL:AGB92704.1};
ORFNames=CG10203 {ECO:0000313|FlyBase:FBgn0028554},
Dmel_CG10203 {ECO:0000313|EMBL:AGB92704.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AGB92704.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-----------------------------------------------------------------------
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EMBL; AE014134; AGB92704.1; -; Genomic_DNA.
RefSeq; NP_001260168.1; NM_001273239.2.
UniGene; Dm.33422; -.
ProteinModelPortal; M9PC85; -.
SMR; M9PC85; -.
PRIDE; M9PC85; -.
EnsemblMetazoa; FBtr0332328; FBpp0304606; FBgn0028554.
GeneID; 33967; -.
KEGG; dme:Dmel_CG10203; -.
CTD; 33967; -.
FlyBase; FBgn0028554; x16.
eggNOG; KOG0107; Eukaryota.
eggNOG; ENOG4111N8Y; LUCA.
GeneTree; ENSGT00910000144115; -.
KO; K12896; -.
OrthoDB; EOG091G17YQ; -.
Reactome; R-DME-109688; Cleavage of Growing Transcript in the Termination Region.
Reactome; R-DME-159236; Transport of Mature mRNA derived from an Intron-Containing Transcript.
Reactome; R-DME-72163; mRNA Splicing - Major Pathway.
Reactome; R-DME-72187; mRNA 3'-end processing.
GenomeRNAi; 33967; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0028554; Expressed in 49 organ(s), highest expression level in embryo.
ExpressionAtlas; M9PC85; baseline and differential.
GO; GO:0071013; C:catalytic step 2 spliceosome; HDA:FlyBase.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0071011; C:precatalytic spliceosome; HDA:FlyBase.
GO; GO:0003729; F:mRNA binding; IDA:FlyBase.
GO; GO:0003723; F:RNA binding; ISM:FlyBase.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0000398; P:mRNA splicing, via spliceosome; ISS:FlyBase.
GO; GO:0000381; P:regulation of alternative mRNA splicing, via spliceosome; IMP:FlyBase.
GO; GO:0010468; P:regulation of gene expression; IMP:FlyBase.
GO; GO:0031440; P:regulation of mRNA 3'-end processing; IMP:FlyBase.
GO; GO:0001178; P:regulation of transcriptional start site selection at RNA polymerase II promoter; IMP:FlyBase.
GO; GO:0008380; P:RNA splicing; IPI:FlyBase.
Gene3D; 3.30.70.330; -; 1.
InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
InterPro; IPR035979; RBD_domain_sf.
InterPro; IPR000504; RRM_dom.
InterPro; IPR001878; Znf_CCHC.
InterPro; IPR036875; Znf_CCHC_sf.
Pfam; PF00076; RRM_1; 1.
SMART; SM00360; RRM; 1.
SMART; SM00343; ZnF_C2HC; 1.
SUPFAM; SSF54928; SSF54928; 1.
SUPFAM; SSF57756; SSF57756; 1.
PROSITE; PS50102; RRM; 1.
PROSITE; PS50158; ZF_CCHC; 1.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
Proteomics identification {ECO:0000213|PeptideAtlas:M9PC85};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
DOMAIN 8 81 RRM. {ECO:0000259|PROSITE:PS50102}.
DOMAIN 116 132 CCHC-type. {ECO:0000259|PROSITE:PS50158}.
SEQUENCE 257 AA; 27711 MW; AFF669B35A8032C1 CRC64;
MSRHPSDRKV YVGDLGNNAR KNDLEYVFGA YGSLRSVWIA RNPPGFAFVE FESARDAADA
VRGLDGRTVC GRRARVELST GKYARSGGGG GGGGGGGGGG GLGGRDRGGG GRGDDKCYEC
GGRGHFARHC RERKARQRRS NSFSRSRSTS RRRRTRSKSG TRSRSRSAGS VGRRSGRSNG
RDENGSASRY SDHERNGSGA VDSPPPPKRR YEDEDDDRVR GSPRSRSRSR SASPAVRRGS
PPRRRGDSSA SRSVSRD


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