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Xylene monooxygenase hydroxylase subunit

 F1LIV6_PSEPU            Unreviewed;       371 AA.
F1LIV6;
03-MAY-2011, integrated into UniProtKB/TrEMBL.
03-MAY-2011, sequence version 1.
07-JUN-2017, entry version 22.
SubName: Full=Xylene monooxygenase hydroxylase subunit {ECO:0000313|EMBL:BAF02445.1};
Name=xylM {ECO:0000313|EMBL:BAF02445.1};
Pseudomonas putida (Arthrobacter siderocapsulatus).
Plasmid pWW53 {ECO:0000313|EMBL:BAF02445.1}.
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
NCBI_TaxID=303 {ECO:0000313|EMBL:BAF02445.1};
[1] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=2997136;
Keil H., Keil S., Pickup R.W., Williams P.A.;
"Evolutionary conservation of genes coding for meta pathway enzymes
within TOL plasmids pWW0 and pWW53.";
J. Bacteriol. 164:887-895(1985).
[2] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=3027047;
Keil H., Saint C.M., Williams P.A.;
"Gene organization of the first catabolic operon of TOL plasmid pWW53:
production of indigo by the xylA gene product.";
J. Bacteriol. 169:764-770(1987).
[3] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=3309179;
Keil H., Keil S., Williams P.A.;
"Molecular analysis of regulatory and structural xyl genes of the TOL
plasmid pWW53-4.";
J. Gen. Microbiol. 133:1149-1158(1987).
[4] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=3076178;
Osborne D.J., Pickup R.W., Williams P.A.;
"The presence of two complete homologous meta pathway operons on TOL
plasmid pWW53.";
J. Gen. Microbiol. 134:2965-2975(1988).
[5] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
Assinder S.J., De Marco P., Sayers J.R., Shaw L.E., Winson M.K.,
Williams P.A.;
"Identical resolvases are encoded by Pseudomonas TOL plasmids pWW53
and pDK1.";
Nucleic Acids Res. 20:5476-5476(1992).
[6] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=8473862;
Assinder S.J., de Marco P., Osborne D.J., Poh C.L., Shaw L.E.,
Winson M.K., Williams P.A.;
"A comparison of the multiple alleles of xylS carried by TOL plasmids
pWW53 and pDK1 and its implications for their evolutionary
relationship.";
J. Gen. Microbiol. 139:557-568(1993).
[7] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=9260942;
Gallegos M.T., Williams P.A., Ramos J.L.;
"Transcriptional control of the multiple catabolic pathways encoded on
the TOL plasmid pWW53 of Pseudomonas putida MT53.";
J. Bacteriol. 179:5024-5029(1997).
[8] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=10877777; DOI=10.1128/AEM.66.7.2842-2852.2000;
Sentchilo V.S., Perebituk A.N., Zehnder A.J.B., van der Meer J.R.;
"Molecular diversity of plasmids bearing genes that encode toluene and
xylene metabolism in Pseudomonas strains isolated from different
contaminated sites in Belarus.";
Appl. Environ. Microbiol. 66:2842-2852(2000).
[9] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=11591664; DOI=10.1128/JB.183.21.6215-6224.2001;
Tsuda M., Genka H.;
"Identification and characterization of Tn4656, a novel class II
transposon carrying a set of toluene-degrading genes from TOL plasmid
pWW53.";
J. Bacteriol. 183:6215-6224(2001).
[10] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=17408691; DOI=10.1016/j.jmb.2007.02.098;
Yano H., Garruto C.E., Sota M., Ohtsubo Y., Nagata Y., Zylstra G.J.,
Williams P.A., Tsuda M.;
"Complete sequence determination combined with analysis of
transposition/site-specific recombination events to explain genetic
organization of IncP-7 TOL plasmid pWW53 and related mobile genetic
elements.";
J. Mol. Biol. 369:11-26(2007).
[11] {ECO:0000313|EMBL:BAF02445.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MT53 {ECO:0000313|EMBL:BAF02445.1};
PLASMID=pWW53 {ECO:0000313|EMBL:BAF02445.1};
PubMed=22925377; DOI=10.1111/j.1462-2920.2012.02861.x;
Miyakoshi M., Shintani M., Inoue K., Terabayashi T., Sai F.,
Ohkuma M., Nojiri H., Nagata Y., Tsuda M.;
"ParI, an orphan ParA family protein from Pseudomonas putida KT2440-
specific genomic island, interferes with the partition system of IncP-
7 plasmids.";
Environ. Microbiol. 14:2946-2959(2012).
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EMBL; AB238971; BAF02445.1; -; Genomic_DNA.
RefSeq; WP_011600766.1; NC_008275.1.
RefSeq; YP_709335.1; NC_008275.1.
GeneID; 4226938; -.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0004497; F:monooxygenase activity; IEA:UniProtKB-KW.
GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
CDD; cd03512; Alkane-hydroxylase; 1.
InterPro; IPR033885; AlkB/XylM.
InterPro; IPR005804; FA_desaturase_dom.
PANTHER; PTHR38674; PTHR38674; 1.
Pfam; PF00487; FA_desaturase; 1.
4: Predicted;
Membrane {ECO:0000256|SAM:Phobius};
Monooxygenase {ECO:0000313|EMBL:BAF02445.1};
Oxidoreductase {ECO:0000313|EMBL:BAF02445.1};
Plasmid {ECO:0000313|EMBL:BAF02445.1};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius}.
TRANSMEM 56 79 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 206 236 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 307 326 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 93 298 FA_desaturase.
{ECO:0000259|Pfam:PF00487}.
SEQUENCE 371 AA; 41652 MW; B5AA3E238CEB6801 CRC64;
MDTLRYYLIP VVTACGLIGF YYGGYWVWLG AATFPVLMVL DVILPKDFSA RKVSPFFADL
TQYLQLPLMI GLYGLLVFGV ENGRIELSEP LQVAGCILSL AWLSGVPTLP VSHELMHRRH
WLPRKMAQLL AMFYGDPNRD IAHVNTHHLY LDTPLDSDTA YRGQTIYSFV ISATVGSVKD
AIKIEAETLR RKGQSPWNLS NKTYQYVALL LALPGLVAYL GGPALGLVTI ASMIIAKGIV
EGFNYFQHYG LVRDLDKPIL LHHAWNHMGT IVRPLGCEIT NHINHHIDGY TRFYELRPEK
EAPQMPSLFV CFLLGLIPPL WFALIAKPKL KDWDQRYATP GERELAMAAN KKAGWPLWCE
SELGRGGLAS I


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