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Xyloglucan endotransglucosylase/hydrolase protein 15 (At-XTH15) (XTH-15) (EC 2.4.1.207) (EC 3.2.1.151)

 XTH15_ARATH             Reviewed;         289 AA.
Q38911; O23272; Q5M726;
28-NOV-2003, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
07-JUN-2017, entry version 134.
RecName: Full=Xyloglucan endotransglucosylase/hydrolase protein 15 {ECO:0000303|PubMed:12514239};
Short=At-XTH15 {ECO:0000303|PubMed:12514239};
Short=XTH-15 {ECO:0000303|PubMed:12514239};
EC=2.4.1.207 {ECO:0000269|PubMed:25446234};
EC=3.2.1.151 {ECO:0000269|PubMed:25446234};
Flags: Precursor;
Name=XTH15 {ECO:0000303|PubMed:12514239};
Synonyms=XTR7 {ECO:0000303|PubMed:8696366};
OrderedLocusNames=At4g14130 {ECO:0000312|Araport:AT4G14130};
ORFNames=dl3105c {ECO:0000312|EMBL:CAB10192.1},
FCAALL.173 {ECO:0000312|EMBL:CAB78455.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
PubMed=8696366; DOI=10.1046/j.1365-313X.1996.9060879.x;
Xu W., Campbell P., Vargheese A.K., Braam J.;
"The Arabidopsis XET-related gene family: environmental and hormonal
regulation of expression.";
Plant J. 9:879-889(1996).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9461215; DOI=10.1038/35140;
Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L.,
Ridley P., Hudson S.-A., Patel K., Murphy G., Piffanelli P.,
Wedler H., Wedler E., Wambutt R., Weitzenegger T., Pohl T., Terryn N.,
Gielen J., Villarroel R., De Clercq R., van Montagu M., Lecharny A.,
Aubourg S., Gy I., Kreis M., Lao N., Kavanagh T., Hempel S.,
Kotter P., Entian K.-D., Rieger M., Schaefer M., Funk B.,
Mueller-Auer S., Silvey M., James R., Monfort A., Pons A.,
Puigdomenech P., Douka A., Voukelatou E., Milioni D., Hatzopoulos P.,
Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A., Moores T.,
Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S., Ansorge W.,
Cooke R., Berger C., Delseny M., Voet M., Volckaert G., Mewes H.-W.,
Klosterman S., Schueller C., Chalwatzis N.;
"Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of
Arabidopsis thaliana.";
Nature 391:485-488(1998).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Shinn P., Chen H., Cheuk R., Kim C.J., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[8]
INDUCTION.
PubMed=11673616; DOI=10.1093/pcp/pce154;
Yokoyama R., Nishitani K.;
"A comprehensive expression analysis of all members of a gene family
encoding cell-wall enzymes allowed us to predict cis-regulatory
regions involved in cell-wall construction in specific organs of
Arabidopsis.";
Plant Cell Physiol. 42:1025-1033(2001).
[9]
NOMENCLATURE.
PubMed=12514239; DOI=10.1093/pcp/pcf171;
Rose J.K.C., Braam J., Fry S.C., Nishitani K.;
"The XTH family of enzymes involved in xyloglucan
endotransglucosylation and endohydrolysis: current perspectives and a
new unifying nomenclature.";
Plant Cell Physiol. 43:1421-1435(2002).
[10]
TISSUE SPECIFICITY.
PubMed=16830179; DOI=10.1007/s11103-006-0021-z;
Becnel J., Natarajan M., Kipp A., Braam J.;
"Developmental expression patterns of Arabidopsis XTH genes reported
by transgenes and Genevestigator.";
Plant Mol. Biol. 61:451-467(2006).
[11]
INDUCTION BY ALUMINUM.
PubMed=21285327; DOI=10.1104/pp.111.172221;
Yang J.L., Zhu X.F., Peng Y.X., Zheng C., Li G.X., Liu Y., Shi Y.Z.,
Zheng S.J.;
"Cell wall hemicellulose contributes significantly to aluminum
adsorption and root growth in Arabidopsis.";
Plant Physiol. 155:1885-1892(2011).
[12]
DISRUPTION PHENOTYPE.
PubMed=23776189; DOI=10.1104/pp.113.219147;
Zhu X.F., Lei G.J., Wang Z.W., Shi Y.Z., Braam J., Li G.X.,
Zheng S.J.;
"Coordination between apoplastic and symplastic detoxification confers
plant aluminum resistance.";
Plant Physiol. 162:1947-1955(2013).
[13]
FUNCTION, CATALYTIC ACTIVITY, AND BIOPHYSICOCHEMICAL PROPERTIES.
PubMed=25446234; DOI=10.1016/j.phytochem.2014.09.020;
Shi Y.Z., Zhu X.F., Miller J.G., Gregson T., Zheng S.J., Fry S.C.;
"Distinct catalytic capacities of two aluminium-repressed Arabidopsis
thaliana xyloglucan endotransglucosylase/hydrolases, XTH15 and XTH31,
heterologously produced in Pichia.";
Phytochemistry 112:160-169(2015).
-!- FUNCTION: Catalyzes xyloglucan endohydrolysis (XEH) and/or
endotransglycosylation (XET). Cleaves and religates xyloglucan
polymers, an essential constituent of the primary cell wall, and
thereby participates in cell wall construction of growing tissues.
Has a high XET activity, but little or no XEH activity in vitro.
Acceptor preferences are XXXGol > XLLGol = XLFGol > XXLGol >
XXFGol. {ECO:0000269|PubMed:25446234}.
-!- CATALYTIC ACTIVITY: Breaks a beta-(1->4) bond in the backbone of a
xyloglucan and transfers the xyloglucanyl segment on to O-4 of the
non-reducing terminal glucose residue of an acceptor, which can be
a xyloglucan or an oligosaccharide of xyloglucan.
{ECO:0000269|PubMed:25446234}.
-!- CATALYTIC ACTIVITY: Xyloglucan + H(2)O = xyloglucan
oligosaccharides. {ECO:0000269|PubMed:25446234}.
-!- BIOPHYSICOCHEMICAL PROPERTIES:
Kinetic parameters:
KM=31 uM for XXXGol {ECO:0000269|PubMed:25446234};
Note=KM for xyloglucan as donor substrate is 2.87 mg/ml. KM is
quoted in mg/ml, not uM, because XTHs are able to utilise any
segment of the polysaccharide chain equally well, not just one
site per molecule as with the acceptor.
{ECO:0000269|PubMed:25446234};
pH dependence:
Optimum pH is 6 for the XET activity.
{ECO:0000269|PubMed:25446234};
-!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000305}. Secreted,
extracellular space, apoplast {ECO:0000305}.
-!- TISSUE SPECIFICITY: Strongly expressed in roots, hypocotyls and
cotyledons. Aslo detected in inflorescence stems and in the
carpels and styles in flowers. {ECO:0000269|PubMed:16830179}.
-!- INDUCTION: Down-regulated by auxin (PubMed:11673616). Down-
regulated by aluminum (PubMed:21285327).
{ECO:0000269|PubMed:11673616, ECO:0000269|PubMed:21285327}.
-!- PTM: Contains at least one intrachain disulfide bond essential for
its enzymatic activity. {ECO:0000250}.
-!- DISRUPTION PHENOTYPE: No visible growth defects, but increased
aluminum resistance. {ECO:0000269|PubMed:23776189}.
-!- SIMILARITY: Belongs to the glycosyl hydrolase 16 family. XTH group
2 subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; U43489; AAB18368.1; -; mRNA.
EMBL; Z97335; CAB10192.1; -; Genomic_DNA.
EMBL; AL161538; CAB78455.1; -; Genomic_DNA.
EMBL; CP002687; AEE83378.1; -; Genomic_DNA.
EMBL; AY045865; AAK76539.1; -; mRNA.
EMBL; BT020422; AAW28549.1; -; mRNA.
EMBL; AY087282; AAM64835.1; -; mRNA.
PIR; F71402; F71402.
RefSeq; NP_193149.2; NM_117490.4.
UniGene; At.25124; -.
ProteinModelPortal; Q38911; -.
SMR; Q38911; -.
BioGrid; 12348; 1.
IntAct; Q38911; 1.
STRING; 3702.AT4G14130.1; -.
CAZy; GH16; Glycoside Hydrolase Family 16.
PaxDb; Q38911; -.
PRIDE; Q38911; -.
EnsemblPlants; AT4G14130.1; AT4G14130.1; AT4G14130.
GeneID; 827051; -.
Gramene; AT4G14130.1; AT4G14130.1; AT4G14130.
KEGG; ath:AT4G14130; -.
Araport; AT4G14130; -.
TAIR; locus:2129445; AT4G14130.
eggNOG; ENOG410IVQK; Eukaryota.
eggNOG; COG2273; LUCA.
HOGENOM; HOG000236368; -.
InParanoid; Q38911; -.
KO; K08235; -.
OMA; MGSFTHY; -.
OrthoDB; EOG09360GR5; -.
PhylomeDB; Q38911; -.
BioCyc; ARA:AT4G14130-MONOMER; -.
PRO; PR:Q38911; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; Q38911; baseline and differential.
Genevisible; Q38911; AT.
GO; GO:0048046; C:apoplast; IEA:UniProtKB-SubCell.
GO; GO:0005618; C:cell wall; IEA:UniProtKB-SubCell.
GO; GO:0033946; F:xyloglucan-specific endo-beta-1,4-glucanase activity; IEA:UniProtKB-EC.
GO; GO:0016762; F:xyloglucan:xyloglucosyl transferase activity; IEA:UniProtKB-EC.
GO; GO:0042546; P:cell wall biogenesis; IEA:InterPro.
GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
GO; GO:0010411; P:xyloglucan metabolic process; IEA:InterPro.
InterPro; IPR013320; ConA-like_dom.
InterPro; IPR000757; GH16.
InterPro; IPR008263; GH16_AS.
InterPro; IPR010713; XET_C.
InterPro; IPR016455; XTH.
Pfam; PF00722; Glyco_hydro_16; 1.
Pfam; PF06955; XET_C; 1.
PIRSF; PIRSF005604; XET; 1.
SUPFAM; SSF49899; SSF49899; 1.
PROSITE; PS01034; GH16_1; 1.
PROSITE; PS51762; GH16_2; 1.
1: Evidence at protein level;
Apoplast; Cell wall; Cell wall biogenesis/degradation;
Complete proteome; Disulfide bond; Glycoprotein; Glycosidase;
Hydrolase; Reference proteome; Secreted; Signal; Transferase.
SIGNAL 1 25 {ECO:0000255}.
CHAIN 26 289 Xyloglucan endotransglucosylase/hydrolase
protein 15.
/FTId=PRO_0000011815.
DOMAIN 26 216 GH16. {ECO:0000255|PROSITE-
ProRule:PRU01098}.
ACT_SITE 102 102 Nucleophile. {ECO:0000255|PROSITE-
ProRule:PRU10064}.
ACT_SITE 106 106 Proton donor. {ECO:0000255|PROSITE-
ProRule:PRU10064}.
CARBOHYD 110 110 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CONFLICT 70 70 F -> V (in Ref. 2 and 3). {ECO:0000305}.
SEQUENCE 289 AA; 32687 MW; 3222ECF640792EF9 CRC64;
MGPSSSLTTI VATVLLVTLF GSAYASNFFD EFDLTWGDHR GKIFNGGNML SLSLDQVSGS
GFKSKKEYLF GRIDMQLKLV AGNSAGTVTA YYLSSQGATH DEIDFEFLGN ETGKPYVLHT
NVFAQGKGDR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK
SQPMRIYSSL WNADDWATRG GLVKTDWSKA PFTAYYRGFN AAACTASSGC DPKFKSSFGD
GKLQVATELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECKKSRV


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