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Zinc finger protein with KRAB and SCAN domains 4 (P373c6.1) (Zinc finger protein 307) (Zinc finger protein 427)

 ZKSC4_HUMAN             Reviewed;         545 AA.
Q969J2; B2RE32; Q5U7L4;
19-SEP-2002, integrated into UniProtKB/Swiss-Prot.
01-DEC-2001, sequence version 1.
25-OCT-2017, entry version 148.
RecName: Full=Zinc finger protein with KRAB and SCAN domains 4;
AltName: Full=P373c6.1;
AltName: Full=Zinc finger protein 307;
AltName: Full=Zinc finger protein 427;
Name=ZKSCAN4; Synonyms=ZNF307, ZNF427;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, AND TISSUE
SPECIFICITY.
TISSUE=Fetal heart;
PubMed=17910948; DOI=10.1016/j.bbrc.2007.08.180;
Li J., Wang Y., Fan X., Mo X., Wang Z., Li Y., Yin Z., Deng Y.,
Luo N., Zhu C., Liu M., Ma Q., Ocorr K., Yuan W., Wu X.;
"ZNF307, a novel zinc finger gene suppresses p53 and p21 pathway.";
Biochem. Biophys. Res. Commun. 363:895-900(2007).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Trachea;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=14574404; DOI=10.1038/nature02055;
Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L.,
Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E.,
Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R.,
Almeida J.P., Ambrose K.D., Andrews T.D., Ashwell R.I.S.,
Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J.,
Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P.,
Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y.,
Burford D.C., Burrill W., Burton J., Carder C., Carter N.P.,
Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V.,
Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J.,
Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E.,
Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A.,
Frankland J., French L., Garner P., Garnett J., Ghori M.J.,
Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M.,
Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S.,
Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R.,
Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E.,
Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A.,
Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C.,
Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M.,
Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M.,
Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K.,
McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T.,
Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R.,
Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W.,
Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M.,
Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L.,
Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J.,
Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B.,
Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L.,
Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W.,
Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A.,
Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.;
"The DNA sequence and analysis of human chromosome 6.";
Nature 425:805-811(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=B-cell;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Embryonic kidney;
PubMed=17525332; DOI=10.1126/science.1140321;
Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III,
Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N.,
Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J.;
"ATM and ATR substrate analysis reveals extensive protein networks
responsive to DNA damage.";
Science 316:1160-1166(2007).
[7]
SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-26 AND LYS-178, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=25218447; DOI=10.1038/nsmb.2890;
Hendriks I.A., D'Souza R.C., Yang B., Verlaan-de Vries M., Mann M.,
Vertegaal A.C.;
"Uncovering global SUMOylation signaling networks in a site-specific
manner.";
Nat. Struct. Mol. Biol. 21:927-936(2014).
[8]
SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-26, AND IDENTIFICATION BY
MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=25772364; DOI=10.1016/j.celrep.2015.02.033;
Hendriks I.A., Treffers L.W., Verlaan-de Vries M., Olsen J.V.,
Vertegaal A.C.;
"SUMO-2 orchestrates chromatin modifiers in response to DNA damage.";
Cell Rep. 10:1778-1791(2015).
[9]
SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-178, AND IDENTIFICATION BY
MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=25755297; DOI=10.1074/mcp.O114.044792;
Xiao Z., Chang J.G., Hendriks I.A., Sigurdsson J.O., Olsen J.V.,
Vertegaal A.C.;
"System-wide analysis of SUMOylation dynamics in response to
replication stress reveals novel small ubiquitin-like modified target
proteins and acceptor lysines relevant for genome stability.";
Mol. Cell. Proteomics 14:1419-1434(2015).
[10]
SUMOYLATION [LARGE SCALE ANALYSIS] AT LYS-26; LYS-29; LYS-178 AND
LYS-222, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE
ANALYSIS].
PubMed=28112733; DOI=10.1038/nsmb.3366;
Hendriks I.A., Lyon D., Young C., Jensen L.J., Vertegaal A.C.,
Nielsen M.L.;
"Site-specific mapping of the human SUMO proteome reveals co-
modification with phosphorylation.";
Nat. Struct. Mol. Biol. 24:325-336(2017).
-!- FUNCTION: May be involved in the transcriptional activation of
MDM2 and EP300 genes. {ECO:0000269|PubMed:17910948}.
-!- INTERACTION:
Q9NP86:CABP5; NbExp=5; IntAct=EBI-2818641, EBI-10311131;
Q9BS40:LXN; NbExp=7; IntAct=EBI-2818641, EBI-1044504;
P57086:SCAND1; NbExp=5; IntAct=EBI-2818641, EBI-745846;
Q9HCM9:TRIM39; NbExp=3; IntAct=EBI-2818641, EBI-739510;
Q9P0L1:ZKSCAN7; NbExp=3; IntAct=EBI-2818641, EBI-743851;
Q9NWS9-2:ZNF446; NbExp=4; IntAct=EBI-2818641, EBI-740232;
Q96IT1:ZNF496; NbExp=7; IntAct=EBI-2818641, EBI-743906;
I3L3J2:ZSCAN32; NbExp=3; IntAct=EBI-2818641, EBI-10178206;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00187, ECO:0000269|PubMed:17910948}.
-!- TISSUE SPECIFICITY: Expressed in adult heart, brain, placenta,
lung and kidney, but not in adult liver and skeletal muscle. In
17-day old embryo, detected in liver, skeletal muscle, brain,
heart and small intestine. {ECO:0000269|PubMed:17910948}.
-!- SIMILARITY: Belongs to the krueppel C2H2-type zinc-finger protein
family. {ECO:0000305}.
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EMBL; AY781778; AAV41023.1; -; mRNA.
EMBL; AK315783; BAG38129.1; -; mRNA.
EMBL; AL022393; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471081; EAX03142.1; -; Genomic_DNA.
EMBL; BC014031; AAH14031.1; -; mRNA.
CCDS; CCDS4647.1; -.
RefSeq; NP_061983.2; NM_019110.4.
RefSeq; XP_005249152.1; XM_005249095.3.
UniGene; Hs.44720; -.
UniGene; Hs.739171; -.
ProteinModelPortal; Q969J2; -.
SMR; Q969J2; -.
BioGrid; 132179; 31.
IntAct; Q969J2; 14.
STRING; 9606.ENSP00000366509; -.
iPTMnet; Q969J2; -.
PhosphoSitePlus; Q969J2; -.
BioMuta; ZKSCAN4; -.
DMDM; 23396993; -.
EPD; Q969J2; -.
MaxQB; Q969J2; -.
PaxDb; Q969J2; -.
PeptideAtlas; Q969J2; -.
PRIDE; Q969J2; -.
DNASU; 387032; -.
Ensembl; ENST00000377294; ENSP00000366509; ENSG00000187626.
GeneID; 387032; -.
KEGG; hsa:387032; -.
UCSC; uc003nks.2; human.
CTD; 387032; -.
DisGeNET; 387032; -.
EuPathDB; HostDB:ENSG00000187626.8; -.
GeneCards; ZKSCAN4; -.
HGNC; HGNC:13854; ZKSCAN4.
HPA; HPA009637; -.
MIM; 611643; gene.
neXtProt; NX_Q969J2; -.
OpenTargets; ENSG00000187626; -.
PharmGKB; PA162409784; -.
eggNOG; KOG1721; Eukaryota.
eggNOG; COG5048; LUCA.
GeneTree; ENSGT00760000118881; -.
HOGENOM; HOG000234619; -.
HOVERGEN; HBG018163; -.
InParanoid; Q969J2; -.
KO; K09229; -.
OMA; CREDAMV; -.
OrthoDB; EOG091G040B; -.
PhylomeDB; Q969J2; -.
TreeFam; TF350830; -.
Reactome; R-HSA-212436; Generic Transcription Pathway.
GenomeRNAi; 387032; -.
PRO; PR:Q969J2; -.
Proteomes; UP000005640; Chromosome 6.
Bgee; ENSG00000187626; -.
CleanEx; HS_ZKSCAN4; -.
ExpressionAtlas; Q969J2; baseline and differential.
Genevisible; Q969J2; HS.
GO; GO:0005829; C:cytosol; IDA:HPA.
GO; GO:0005654; C:nucleoplasm; IDA:HPA.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd07765; KRAB_A-box; 1.
InterPro; IPR001909; KRAB.
InterPro; IPR036051; KRAB_dom_sf.
InterPro; IPR008916; Retrov_capsid_C.
InterPro; IPR003309; SCAN_dom.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
Pfam; PF01352; KRAB; 1.
Pfam; PF02023; SCAN; 1.
SMART; SM00349; KRAB; 1.
SMART; SM00431; SCAN; 1.
SMART; SM00355; ZnF_C2H2; 7.
SUPFAM; SSF109640; SSF109640; 1.
SUPFAM; SSF47353; SSF47353; 1.
SUPFAM; SSF57667; SSF57667; 4.
PROSITE; PS50805; KRAB; 1.
PROSITE; PS50804; SCAN_BOX; 1.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 7.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 7.
1: Evidence at protein level;
Complete proteome; DNA-binding; Isopeptide bond; Metal-binding;
Nucleus; Polymorphism; Reference proteome; Repeat; Transcription;
Transcription regulation; Ubl conjugation; Zinc; Zinc-finger.
CHAIN 1 545 Zinc finger protein with KRAB and SCAN
domains 4.
/FTId=PRO_0000047525.
DOMAIN 53 135 SCAN box. {ECO:0000255|PROSITE-
ProRule:PRU00187}.
DOMAIN 221 317 KRAB. {ECO:0000255|PROSITE-
ProRule:PRU00119}.
ZN_FING 320 342 C2H2-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 348 370 C2H2-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 376 398 C2H2-type 3. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 404 426 C2H2-type 4. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 432 454 C2H2-type 5. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 487 509 C2H2-type 6. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 515 537 C2H2-type 7. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
CROSSLNK 26 26 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in SUMO2).
{ECO:0000244|PubMed:25218447,
ECO:0000244|PubMed:25772364,
ECO:0000244|PubMed:28112733}.
CROSSLNK 29 29 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in SUMO2).
{ECO:0000244|PubMed:28112733}.
CROSSLNK 178 178 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in SUMO2).
{ECO:0000244|PubMed:25218447,
ECO:0000244|PubMed:25755297,
ECO:0000244|PubMed:28112733}.
CROSSLNK 222 222 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in SUMO2).
{ECO:0000244|PubMed:28112733}.
VARIANT 33 33 S -> F (in dbSNP:rs9986596).
/FTId=VAR_059951.
SEQUENCE 545 AA; 61579 MW; CCFB6B5D976926ED CRC64;
MAREPRKNAA LDAQSAEDQT GLLTVKVEKE EASALTAEVR APCSPARGPE RSRQRFRGFR
YPEAAGPREA LSRLRELCGQ WLQPEMHSKE QILELLVLEQ FLTILPGNLQ SWVREQHPES
GEEVVVLLEY LERQLDEPAP QVPVGDQGQE LLCCKMALLT QTQGSQSSQC QPMKALFKHE
SLGSQPLHDR VLQVPGLAQG GCCREDAMVA SRLTPGSQGL LKMEDVALTL TPGWTQLDSS
QVNLYRDEKQ ENHSSLVSLG GEIQTKSRDL PPVKKLPEKE HGKICHLRED IAQIPTHAEA
GEQEGRLQRK QKNAIGSRRH YCHECGKSFA QSSGLTKHRR IHTGEKPYEC EDCGKTFIGS
SALVIHQRVH TGEKPYECEE CGKVFSHSSN LIKHQRTHTG EKPYECDDCG KTFSQSCSLL
EHHKIHTGEK PYQCNMCGKA FRRNSHLLRH QRIHGDKNVQ NPEHGESWES QGRTESQWEN
TEAPVSYKCN ECERSFTRNR SLIEHQKIHT GEKPYQCDTC GKGFTRTSYL VQHQRSHVGK
KTLSQ


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