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p53 protein long form variant 1 (p53, isoform B)

 Q8IMZ4_DROME            Unreviewed;       495 AA.
Q8IMZ4;
01-MAR-2003, integrated into UniProtKB/TrEMBL.
05-JUL-2004, sequence version 2.
18-JUL-2018, entry version 148.
SubName: Full=p53 protein long form variant 1 {ECO:0000313|EMBL:ABB80263.1};
SubName: Full=p53, isoform B {ECO:0000313|EMBL:AAN13925.2};
Name=p53 {ECO:0000313|EMBL:AAN13925.2,
ECO:0000313|FlyBase:FBgn0039044};
Synonyms=CG10873 {ECO:0000313|EMBL:AAN13925.2},
CG31325 {ECO:0000313|EMBL:AAN13925.2},
D-p53 {ECO:0000313|EMBL:AAN13925.2},
Dm-P53 {ECO:0000313|EMBL:AAN13925.2},
Dmel\CG33336 {ECO:0000313|EMBL:AAN13925.2},
DMP53 {ECO:0000313|EMBL:AAN13925.2},
DmP53 {ECO:0000313|EMBL:AAN13925.2},
Dmp53 {ECO:0000313|EMBL:AAN13925.2},
dmp53 {ECO:0000313|EMBL:AAN13925.2},
Dp53 {ECO:0000313|EMBL:AAN13925.2},
dp53 {ECO:0000313|EMBL:AAN13925.2},
prac {ECO:0000313|EMBL:AAN13925.2};
ORFNames=CG33336 {ECO:0000313|FlyBase:FBgn0039044},
Dmel_CG33336 {ECO:0000313|EMBL:AAN13925.2};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:ABB80263.1}
NUCLEOTIDE SEQUENCE.
PubMed=16131611; DOI=10.1101/gad.1339905;
Bourdon J.C., Fernandes K., Murray-Zmijewski F., Liu G., Diot A.,
Xirodimas D.P., Saville M.K., Lane D.P.;
"p53 isoforms can regulate p53 transcriptional activity.";
Genes Dev. 19:2122-2137(2005).
[7] {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[8] {ECO:0000313|EMBL:AAN13925.2}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAN13925.2}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[11] {ECO:0000313|EMBL:AAN13925.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[12] {ECO:0000313|EMBL:AAN13925.2}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-----------------------------------------------------------------------
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EMBL; AE014297; AAN13925.2; -; Genomic_DNA.
EMBL; DQ191318; ABB80263.1; -; mRNA.
RefSeq; NP_996267.1; NM_206544.2.
UniGene; Dm.3257; -.
SMR; Q8IMZ4; -.
IntAct; Q8IMZ4; 26.
STRING; 7227.FBpp0083753; -.
PRIDE; Q8IMZ4; -.
EnsemblMetazoa; FBtr0084360; FBpp0083753; FBgn0039044.
GeneID; 2768677; -.
UCSC; CG33336-RB; d. melanogaster.
CTD; 2768677; -.
FlyBase; FBgn0039044; p53.
eggNOG; ENOG410IGE4; Eukaryota.
eggNOG; ENOG410XV9W; LUCA.
OrthoDB; EOG091G06IB; -.
GenomeRNAi; 2768677; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0039044; -.
GO; GO:0005829; C:cytosol; IBA:GO_Central.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0005667; C:transcription factor complex; IBA:GO_Central.
GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
GO; GO:0003684; F:damaged DNA binding; IBA:GO_Central.
GO; GO:0003700; F:DNA binding transcription factor activity; IBA:GO_Central.
GO; GO:0002039; F:p53 binding; IBA:GO_Central.
GO; GO:1990841; F:promoter-specific chromatin binding; IDA:FlyBase.
GO; GO:0001085; F:RNA polymerase II transcription factor binding; IPI:BHF-UCL.
GO; GO:0001097; F:TFIIH-class transcription factor binding; IPI:FlyBase.
GO; GO:0008134; F:transcription factor binding; IPI:FlyBase.
GO; GO:0000976; F:transcription regulatory region sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0031624; F:ubiquitin conjugating enzyme binding; IPI:BHF-UCL.
GO; GO:0031625; F:ubiquitin protein ligase binding; IPI:FlyBase.
GO; GO:0006919; P:activation of cysteine-type endopeptidase activity involved in apoptotic process; IMP:FlyBase.
GO; GO:0006915; P:apoptotic process; IMP:FlyBase.
GO; GO:0008219; P:cell death; IMP:FlyBase.
GO; GO:0006974; P:cellular response to DNA damage stimulus; IMP:FlyBase.
GO; GO:0071480; P:cellular response to gamma radiation; IMP:BHF-UCL.
GO; GO:0009267; P:cellular response to starvation; IMP:FlyBase.
GO; GO:0034644; P:cellular response to UV; IBA:GO_Central.
GO; GO:0008340; P:determination of adult lifespan; IMP:FlyBase.
GO; GO:0030330; P:DNA damage response, signal transduction by p53 class mediator; TAS:FlyBase.
GO; GO:0006978; P:DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator; IBA:GO_Central.
GO; GO:0035234; P:ectopic germ cell programmed cell death; IMP:FlyBase.
GO; GO:0072332; P:intrinsic apoptotic signaling pathway by p53 class mediator; IMP:BHF-UCL.
GO; GO:0008630; P:intrinsic apoptotic signaling pathway in response to DNA damage; IMP:FlyBase.
GO; GO:0042771; P:intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; IMP:FlyBase.
GO; GO:0031571; P:mitotic G1 DNA damage checkpoint; IBA:GO_Central.
GO; GO:0046533; P:negative regulation of photoreceptor cell differentiation; IMP:FlyBase.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0014016; P:neuroblast differentiation; IMP:FlyBase.
GO; GO:0007405; P:neuroblast proliferation; IMP:FlyBase.
GO; GO:0048477; P:oogenesis; IGI:FlyBase.
GO; GO:0045787; P:positive regulation of cell cycle; IGI:FlyBase.
GO; GO:2000685; P:positive regulation of cellular response to X-ray; IMP:FlyBase.
GO; GO:0016239; P:positive regulation of macroautophagy; IMP:FlyBase.
GO; GO:0010940; P:positive regulation of necrotic cell death; IMP:FlyBase.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IMP:BHF-UCL.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:FlyBase.
GO; GO:0007131; P:reciprocal meiotic recombination; IMP:FlyBase.
GO; GO:0060785; P:regulation of apoptosis involved in tissue homeostasis; IMP:FlyBase.
GO; GO:0042127; P:regulation of cell proliferation; IMP:FlyBase.
GO; GO:0006282; P:regulation of DNA repair; IMP:FlyBase.
GO; GO:0043523; P:regulation of neuron apoptotic process; IBA:GO_Central.
GO; GO:0046620; P:regulation of organ growth; IMP:FlyBase.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IMP:FlyBase.
GO; GO:1990248; P:regulation of transcription from RNA polymerase II promoter in response to DNA damage; IMP:FlyBase.
GO; GO:0010212; P:response to ionizing radiation; IMP:FlyBase.
GO; GO:0009314; P:response to radiation; IMP:FlyBase.
GO; GO:0042594; P:response to starvation; IMP:FlyBase.
GO; GO:0009411; P:response to UV; IMP:FlyBase.
GO; GO:0042246; P:tissue regeneration; IMP:FlyBase.
CDD; cd08367; P53; 1.
Gene3D; 1.20.58.680; -; 1.
Gene3D; 2.60.40.720; -; 1.
InterPro; IPR038163; Dro_p53_C_sf.
InterPro; IPR008967; p53-like_TF_DNA-bd.
InterPro; IPR012346; p53/RUNT-type_TF_DNA-bd_sf.
InterPro; IPR024631; p53_C_Drosophila.
InterPro; IPR011615; p53_DNA-bd.
InterPro; IPR002117; p53_tumour_suppressor.
PANTHER; PTHR11447; PTHR11447; 1.
Pfam; PF00870; P53; 1.
Pfam; PF11619; P53_C; 1.
SUPFAM; SSF49417; SSF49417; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
DOMAIN 214 383 P53. {ECO:0000259|Pfam:PF00870}.
DOMAIN 429 495 P53_C. {ECO:0000259|Pfam:PF11619}.
SEQUENCE 495 AA; 55565 MW; 7BEDD6D749DAA28D CRC64;
MSLHKSASFS LTFNQNTSIV SRSNSRTIFE AFKEFLDFWD IGNEVSAESA VRVSSNGAFN
LPQSFGNESN EYAHLATPVD PAYGGNNTNN MMQFTNNLEI LANNNSDGNN KINACNKFVC
HKGTDSEDDS TEVDIKEDIP KTVEVSGSEL TTEPMAFLQG LNSGNLMQFS QQSVLREMML
QDIQIQANTL PKLENHNIGG YCFSMVLDEP PKSLWMYSIP LNKLYIRMNK AFNVDVQFKS
KMPIQPLNLR VFLCFSNDVS APVVRCQNHL SVEPLTANNA KMRESLLRSE NPNSVYCGNA
QGKGISERFS VVVPLNMSRS VTRSGLTRQT LAFKFVCQNS CIGRKETSLV FCLEKACGDI
VGQHVIHVKI CTCPKRDRIQ DERQLNSKKR KSVPEAAEED EPSKVRRCIA IKTEDTESND
SRDCDDSAAE WNVSRTPDGD YRLAITCPNK EWLLQSIEGM IKEAAAEVLR NPNQENLRRH
ANKLLSLKKR AYELP


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