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Pubmed ID :14593172
Publication Date : //

Empirical analysis of transcriptional activity in the Arabidopsis genome.


Functional analysis of a genome requires accurate gene structure information and a complete gene inventory. A dual experimental strategy was used to verify and correct the initial genome sequence annotation of the reference plant Arabidopsis. Sequencing full-length cDNAs and hybridizations using RNA populations from various tissues to a set of high-density oligonucleotide arrays spanning the entire genome allowed the accurate annotation of thousands of gene structures. We identified 5817 novel transcription units, including a substantial amount of antisense gene transcription, and 40 genes within the genetically defined centromeres. This approach resulted in completion of approximately 30% of the Arabidopsis ORFeome as a resource for global functional experimentation of the plant proteome.

Authors : Yamada Kayoko , Lim Jun , Dale Joseph M , Chen Huaming , Shinn Paul , Palm Curtis J , Southwick Audrey M , Wu Hank C , Kim Christopher , Nguyen Michelle , Pham Paul , Cheuk Rosa , Karlin-Newmann George , Liu Shirley X , Lam Bao , Sakano Hitomi , Wu Troy , Yu Guixia , Miranda Molly , Quach Hong L , Tripp Matthew , Chang Charlie H , Lee Jeong M , Toriumi Mitsue , Chan Marie M H , Tang Carolyn C , Onodera Courtney S , Deng Justine M , Akiyama Kenji , Ansari Yasser , Arakawa Takahiro , Banh Jenny , Banno Fumika , Bowser Leah , Brooks Shelise , Carninci Piero , Chao Qimin , Choy Nathan , Enju Akiko , Goldsmith Andrew D , Gurjal Mani , Hansen Nancy F , Hayashizaki Yoshihide , Johnson-Hopson Chanda , Hsuan Vickie W , Iida Kei , Karnes Meagan , Khan Shehnaz , Koesema Eric , Ishida Junko , Jiang Paul X , Jones Ted , Kawai Jun , Kamiya Asako , Meyers Cristina , Nakajima Maiko , Narusaka Mari , Seki Motoaki , Sakurai Tetsuya , Satou Masakazu , Tamse Racquel , Vaysberg Maria , Wallender Erika K , Wong Cecilia , Yamamura Yuki , Yuan Shiaulou , Shinozaki Kazuo , Davis Ronald W , Theologis Athanasios , Ecker Joseph R ,

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