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Arabidopsis thaliana (Arabidopsis) is unique among plant model organisms in having a small genome (130-140 Mb), excellent physical and genetic maps, and little repetitive DNA. Here we report the sequence of chromosome 2 from the Columbia ecotype in two gap-free assemblies (contigs) of 3.6 and 16 megabases (Mb). The latter represents the longest published stretch of uninterrupted DNA sequence assembled from any organism to date. Chromosome 2 represents 15% of the genome and encodes 4,037 genes, 49% of which have no predicted function. Roughly 250 tandem gene duplications were found in addition to large-scale duplications of about 0.5 and 4.5 Mb between chromosomes 2 and 1 and between chromosomes 2 and 4, respectively. Sequencing of nearly 2 Mb within the genetically defined centromere revealed a low density of recognizable genes, and a high density and diverse range of vestigial and presumably inactive mobile elements. More unexpected is what appears to be a recent insertion of a continuous stretch of 75% of the mitochondrial genome into chromosome 2.
Authors : Lin X , Kaul S , Rounsley S , Shea T P , Benito M I , Town C D , Fujii C Y , Mason T , Bowman C L , Barnstead M , Feldblyum T V , Buell C R , Ketchum K A , Lee J , Ronning C M , Koo H L , Moffat K S , Cronin L A , Shen M , Pai G , Van Aken S , Umayam L , Tallon L J , Gill J E , Adams M D , Carrera A J , Creasy T H , Goodman H M , Somerville C R , Copenhaver G P , Preuss D , Nierman W C , White O , Eisen J A , Salzberg S L , Fraser C M , Venter J C ,
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