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Pubmed ID :10617197
Publication Date : //

Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.


Arabidopsis thaliana (Arabidopsis) is unique among plant model organisms in having a small genome (130-140 Mb), excellent physical and genetic maps, and little repetitive DNA. Here we report the sequence of chromosome 2 from the Columbia ecotype in two gap-free assemblies (contigs) of 3.6 and 16 megabases (Mb). The latter represents the longest published stretch of uninterrupted DNA sequence assembled from any organism to date. Chromosome 2 represents 15% of the genome and encodes 4,037 genes, 49% of which have no predicted function. Roughly 250 tandem gene duplications were found in addition to large-scale duplications of about 0.5 and 4.5 Mb between chromosomes 2 and 1 and between chromosomes 2 and 4, respectively. Sequencing of nearly 2 Mb within the genetically defined centromere revealed a low density of recognizable genes, and a high density and diverse range of vestigial and presumably inactive mobile elements. More unexpected is what appears to be a recent insertion of a continuous stretch of 75% of the mitochondrial genome into chromosome 2.

Authors : Lin X , Kaul S , Rounsley S , Shea T P , Benito M I , Town C D , Fujii C Y , Mason T , Bowman C L , Barnstead M , Feldblyum T V , Buell C R , Ketchum K A , Lee J , Ronning C M , Koo H L , Moffat K S , Cronin L A , Shen M , Pai G , Van Aken S , Umayam L , Tallon L J , Gill J E , Adams M D , Carrera A J , Creasy T H , Goodman H M , Somerville C R , Copenhaver G P , Preuss D , Nierman W C , White O , Eisen J A , Salzberg S L , Fraser C M , Venter J C ,

Related products :

Catalog number Product name Quantity
AS10 931 Antibody: AtPCaP1 | Arabidopsis thaliana plasma membrane cation-binding protein-1, Immunogen: KLH-conjugated peptide derived from Arabidopsis thaliana PCaP1 sequence Q96262, Host: rabbit, polyclonal, 100
AS01 010 Antibody: Lhcb6 | CP24 chlorphyll a_b-binding protein of plant PSII, Immunogen: BSA-conjugated synthetic peptide derived from Arabidopsis thaliana Lhcb6 (At1g15820) protein sequence. This sequence is 200
AS07 205 Antibody: AtFtsH4 | plant fts metallo-protease H4, Immunogen: KLH-conjugated peptide derived from sequence of Arabidopsis thaliana FtsH4 O80983, Host: rabbit, polyclonal, Confirmed reactivity: Arabido 200
AS05 094A Antibody: FtsH6 | plant fts metallo-protease H6, Immunogen: KLH-conjugated peptide chosen from AtFtsH6 protein sequence of Arabidopsis thaliana Q1PDW5, Host: rabbit, polyclonal, Confirmed reactivity: 2x100
AS07 251 Antibody: FtsH10 | plant fts metallo-protease H10, Immunogen: KLH-conjugated peptide located near C-terminus chosen from sequence of Arabidopsis thaliana FtsH10 Q8VZI8, Host: rabbit, polyclonal, Confi 200
AS06 130 Antibody: FtsH9 | plant fts metallo-protease H9, Immunogen: KLH-conjugated synthetic peptide derived from Arabidopsis thaliana FtsH9 protein sequence Q9FIM2, Host: rabbit, polyclonal, Confirmed reacti 2x200
GWB-ECFF87 Arabidopsis thaliana Plant Lysate
AS08 289 Antibody: ZEP | Zeaxanthin Epoxidase, Immunogen: KLH-conjugated synthetic peptide derived from ZEP sequence of Arabidopsis thaliana Q9FGC7, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis 200
AS07 258 Antibody: LOX-C | chloroplastic lipoxygenase, Immunogen: recombinant Arabidopsis thaliana protein, loop (aa 257-450) P38418, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 100
AS09 477 Antibody: S14 | 40S ribosomal protein S14-1, Immunogen: KLH-conjugated synthetic peptide derived from Arabidopsis thaliana Q9SIH0, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 100
AS09 476 Antibody: AtArf2 | ADP ribosylation factor 2, Immunogen: synthetic peptide derived from Arabidopsis thaliana Q9SRC3, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 100
AS11 1783 Antibody: Acd1 | accelerated cell death 1 , Immunogen: recombinant PaO from Arabidopsis thaliana Q9FYC2, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 100
AS09 515 Antibody: KC1 | potassium channel KAT3 , Immunogen: KLH-conjugated peptide derived from Arabidopsis thaliana KC1 protein P92960, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 200
AS09 474 Antibody: AtMTP4 | metal tolerance protein B, Immunogen: synthetic peptide derived from Arabidopsis thaliana Q9SRC3, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 100
AS10 674 Antibody: Ferritin (plant), Immunogen: KLH-conjugated synthetic peptide derived from known plant ferritin sequences including Arabidopsis thaliana Q39101, Host: rabbit, polyclonal, Confirmed reactivit 200
AS09 475 Antibody: Ligand-gated ion channel 1.3, Immunogen: KLH-conjugated synthetic peptide derived from Arabidopsis thaliana Q9FH75, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana, Raph 100
AS10 651 Antibody: Enolase, Immunogen: recombinant Arabidopsis thaliana enolase At2g36530, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 200
AS10 673 Antibody: AGO9 | argonaute 9, Immunogen: KLH-conjugated synthetic peptide derived from Arabidopsis thaliana AGO9 protein sequence Q84YI4, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis th 100
AS09 617 Antibody: AGO4 | argonaute 4, Immunogen: KLH-conjugated synthetic peptide chosen from Arabidopsis thaliana AGO4 sequence Q9ZVD5 At2g27040, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis t 100
AS10 671 Antibody: AGO5 | argonaute 5, Immunogen: peptide of Arabidopsis thaliana AGO5 Q9SJK3, AT2G27880, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 200
AS10 937 Antibody: CPLD11 , Immunogen: overexpressed fragment of recombinant Arabidopsis thaliana CPLD11 NP_566650, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 200
AS10 672 Antibody: AGO6 | argonaute 6, Immunogen: KLH-conjugated peptide derived from Arabidopsis thaliana AGO6 At2g32940, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 100
AS09 459 Antibody: ClpB-P | ClpB3, Immunogen: KLH-conjugated peptide derived from ClpB-P of Arabidopsis thaliana Q9LF37, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana 200
AS12 2104 Antibody: LSD1 | LESION SIMULATING DISEASE 1, Immunogen: KLH-conjugated synthetic peptide derived from Arabidopsis thaliana LSD1 sequence, Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis t 200
AS06 116 Antibody: PGL35 | plastoglobulin 35, Immunogen: recombinant Arabidopsis thaliana PGL35 protein O81439 , Host: rabbit, polyclonal, Confirmed reactivity: Arabidopsis thaliana, Gossypium hirsutum cv. Del 200


 

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