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Pubmed ID :15164053
Publication Date : //

DNA sequence and analysis of human chromosome 9.


Chromosome 9 is highly structurally polymorphic. It contains the largest autosomal block of heterochromatin, which is heteromorphic in 6-8% of humans, whereas pericentric inversions occur in more than 1% of the population. The finished euchromatic sequence of chromosome 9 comprises 109,044,351 base pairs and represents >99.6% of the region. Analysis of the sequence reveals many intra- and interchromosomal duplications, including segmental duplications adjacent to both the centromere and the large heterochromatic block. We have annotated 1,149 genes, including genes implicated in male-to-female sex reversal, cancer and neurodegenerative disease, and 426 pseudogenes. The chromosome contains the largest interferon gene cluster in the human genome. There is also a region of exceptionally high gene and G + C content including genes paralogous to those in the major histocompatibility complex. We have also detected recently duplicated genes that exhibit different rates of sequence divergence, presumably reflecting natural selection.

Authors : Humphray S J , Oliver K , Hunt A R , Plumb R W , Loveland J E , Howe K L , Andrews T D , Searle S , Hunt S E , Scott C E , Jones M C , Ainscough R , Almeida J P , Ambrose K D , Ashwell R I S , Babbage A K , Babbage S , Bagguley C L , Bailey J , Banerjee R , Barker D J , Barlow K F , Bates K , Beasley H , Beasley O , Bird C P , Bray-Allen S , Brown A J , Brown J Y , Burford D , Burrill W , Burton J , Carder C , Carter N P , Chapman J C , Chen Y , Clarke G , Clark S Y , Clee C M , Clegg S , Collier R E , Corby N , Crosier M , Cummings A T , Davies J , Dhami P , Dunn M , Dutta I , Dyer L W , Earthrowl M E , Faulkner L , Fleming C J , Frankish A , Frankland J A , French L , Fricker D G , Garner P , Garnett J , Ghori J , Gilbert J G R , Glison C , Grafham D V , Gribble S , Griffiths C , Griffiths-Jones S , Grocock R , Guy J , Hall R E , Hammond S , Harley J L , Harrison E S I , Hart E A , Heath P D , Henderson C D , Hopkins B L , Howard P J , Howden P J , Huckle E , Johnson C , Johnson D , Joy A A , Kay M , Keenan S , Kershaw J K , Kimberley A M , King A , Knights A , Laird G K , Langford C , Lawlor S , Leongamornlert D A , Leversha M , Lloyd C , Lloyd D M , Lovell J , Martin S , Mashreghi-Mohammadi M , Matthews L , McLaren S , McLay K E , McMurray A , Milne S , Nickerson T , Nisbett J , Nordsiek G , Pearce A V , Peck A I , Porter K M , Pandian R , Pelan S , Phillimore B , Povey S , Ramsey Y , Rand V , Scharfe M , Sehra H K , Shownkeen R , Sims S K , Skuce C D , Smith M , Steward C A , Swarbreck D , Sycamore N , Tester J , Thorpe A , Tracey A , Tromans A , Thomas D W , Wall M , Wallis J M , West A P , Whitehead S L , Willey D L , Williams S A , Wilming L , Wray P W , Young L , Ashurst J L , Coulson A , Blöcker H , Durbin R , Sulston J E , Hubbard T , Jackson M J , Bentley D R , Beck S , Rogers J , Dunham I ,

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