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1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)

 B3U4U0_9BACT            Unreviewed;       386 AA.
B3U4U0;
02-SEP-2008, integrated into UniProtKB/TrEMBL.
02-SEP-2008, sequence version 1.
16-JAN-2019, entry version 72.
RecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00320185};
Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};
EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00320172};
AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};
AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183};
Name=dxr {ECO:0000256|HAMAP-Rule:MF_00183,
ECO:0000313|EMBL:ACE75657.1};
ORFNames=NIDE1511 {ECO:0000313|EMBL:CBK41251.1};
Nitrospira defluvii.
Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.
NCBI_TaxID=330214 {ECO:0000313|EMBL:ACE75657.1};
[1] {ECO:0000313|EMBL:ACE75657.1}
NUCLEOTIDE SEQUENCE.
PubMed=18459973; DOI=10.1111/j.1462-2920.2008.01646.x;
Maixner F., Wagner M., Lucker S., Pelletier E., Schmitz-Esser S.,
Hace K., Spieck E., Konrat R., Le Paslier D., Daims H.;
"Environmental genomics reveals a functional chlorite dismutase in the
nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'.";
Environ. Microbiol. 10:3043-3056(2008).
[2] {ECO:0000313|EMBL:CBK41251.1, ECO:0000313|Proteomes:UP000001660}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1073/pnas.1003860107;
Lucker S., Wagner M., Maixner F., Pelletier E., Koch H., Vacherie B.,
Rattei T., Sinninghe Damste J., Spieck E., Le Paslier D., Daims H.;
"A Nitrospira metagenome illuminates the physiology and evolution of
globally important nitrite-oxidizing bacteria.";
Proc. Natl. Acad. Sci. U.S.A. 0:0-0(2010).
[3] {ECO:0000313|EMBL:CBK41251.1}
NUCLEOTIDE SEQUENCE.
Genoscope - CEA;
Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Catalyzes the NADP-dependent rearrangement and reduction
of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol
4-phosphate (MEP). {ECO:0000256|HAMAP-Rule:MF_00183,
ECO:0000256|SAAS:SAAS00320182}.
-!- CATALYTIC ACTIVITY:
Reaction=2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-
D-xylulose 5-phosphate + H(+) + NADPH; Xref=Rhea:RHEA:13717,
ChEBI:CHEBI:15378, ChEBI:CHEBI:57783, ChEBI:CHEBI:57792,
ChEBI:CHEBI:58262, ChEBI:CHEBI:58349; EC=1.1.1.267;
Evidence={ECO:0000256|HAMAP-Rule:MF_00183,
ECO:0000256|SAAS:SAAS01116073};
-!- COFACTOR:
Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240;
Evidence={ECO:0000256|HAMAP-Rule:MF_00183,
ECO:0000256|SAAS:SAAS00320167};
-!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate
biosynthesis via DXP pathway; isopentenyl diphosphate from 1-
deoxy-D-xylulose 5-phosphate: step 1/6. {ECO:0000256|HAMAP-
Rule:MF_00183, ECO:0000256|SAAS:SAAS00320176}.
-!- SIMILARITY: Belongs to the DXR family. {ECO:0000256|HAMAP-
Rule:MF_00183, ECO:0000256|SAAS:SAAS00537059}.
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EMBL; EU559167; ACE75657.1; -; Genomic_DNA.
EMBL; FP929003; CBK41251.1; -; Genomic_DNA.
RefSeq; WP_013248075.1; NC_014355.1.
STRING; 330214.NIDE1511; -.
EnsemblBacteria; CBK41251; CBK41251; NIDE1511.
KEGG; nde:NIDE1511; -.
eggNOG; ENOG4105CEA; Bacteria.
eggNOG; COG0743; LUCA.
HOGENOM; HOG000007221; -.
KO; K00099; -.
OrthoDB; 1200722at2; -.
BioCyc; CNIT330214:NIDE_RS06980-MONOMER; -.
UniPathway; UPA00056; UER00092.
Proteomes; UP000001660; Chromosome.
GO; GO:0030604; F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity; IEA:UniProtKB-UniRule.
GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0070402; F:NADPH binding; IEA:InterPro.
GO; GO:0019288; P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; IEA:UniProtKB-UniPathway.
GO; GO:0016114; P:terpenoid biosynthetic process; IEA:UniProtKB-UniRule.
HAMAP; MF_00183; DXP_reductoisom; 1.
InterPro; IPR003821; DXP_reductoisomerase.
InterPro; IPR013644; DXP_reductoisomerase_C.
InterPro; IPR013512; DXP_reductoisomerase_N.
InterPro; IPR026877; DXPR_C.
InterPro; IPR036169; DXPR_C_sf.
InterPro; IPR036291; NAD(P)-bd_dom_sf.
PANTHER; PTHR30525; PTHR30525; 1.
Pfam; PF08436; DXP_redisom_C; 1.
Pfam; PF02670; DXP_reductoisom; 1.
Pfam; PF13288; DXPR_C; 1.
PIRSF; PIRSF006205; Dxp_reductismrs; 1.
SUPFAM; SSF51735; SSF51735; 1.
SUPFAM; SSF69055; SSF69055; 1.
TIGRFAMs; TIGR00243; Dxr; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000001660};
Isomerase {ECO:0000313|EMBL:ACE75657.1};
Isoprene biosynthesis {ECO:0000256|HAMAP-Rule:MF_00183,
ECO:0000256|SAAS:SAAS00419353};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00183,
ECO:0000256|SAAS:SAAS00419281};
NADP {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00419324};
Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00183,
ECO:0000256|SAAS:SAAS00419287, ECO:0000313|EMBL:ACE75657.1};
Reference proteome {ECO:0000313|Proteomes:UP000001660}.
DOMAIN 4 130 DXP_reductoisom.
{ECO:0000259|Pfam:PF02670}.
DOMAIN 144 227 DXP_redisom_C.
{ECO:0000259|Pfam:PF08436}.
DOMAIN 259 375 DXPR_C. {ECO:0000259|Pfam:PF13288}.
NP_BIND 7 36 NADP. {ECO:0000256|HAMAP-Rule:MF_00183}.
METAL 148 148 Divalent metal cation.
{ECO:0000256|HAMAP-Rule:MF_00183}.
METAL 150 150 Divalent metal cation.
{ECO:0000256|HAMAP-Rule:MF_00183}.
METAL 219 219 Divalent metal cation.
{ECO:0000256|HAMAP-Rule:MF_00183}.
BINDING 123 123 Substrate. {ECO:0000256|HAMAP-
Rule:MF_00183}.
BINDING 150 150 Substrate. {ECO:0000256|HAMAP-
Rule:MF_00183}.
BINDING 174 174 Substrate. {ECO:0000256|HAMAP-
Rule:MF_00183}.
BINDING 197 197 Substrate. {ECO:0000256|HAMAP-
Rule:MF_00183}.
BINDING 219 219 Substrate. {ECO:0000256|HAMAP-
Rule:MF_00183}.
SEQUENCE 386 AA; 42368 MW; B00E1DD918731F92 CRC64;
MKNIVILGST GSIGTNTLDI VDRFPEEFHV VGLTAGSNDE KLEAQIRKFR PAFAALANEA
AAAKLRDRCA DLPVKILAGN EGVAEVAQSQ DAELVISAIV GGAGLLPTLA AIRAGKQIAL
ANKEPMVMAG ALMQAEAKKH HVRIFPIDSE HSAIFQSLEG HRREDVKRII LTASGGPLWG
FSREQLQDVS PERALQHPNW KMGSKITIDS ATLMNKGLEV IEARWLFDIP ETQIEVLVHR
ESIIHSLVEY TDRSVIAQLG LPDMRTPISY AMRYPERMPL DLPSLDLTEI STLTFFKPDH
ARFPCLQLGY EALRIGGTMP ATMNAANEVA VEAFLQSGIR FLDIPDIIRS TMEAHAPRPI
DGLDDALDAD HWARDKAESL VHALTR


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Pathways :
WP2340: Thiamine (vitamin B1) biosynthesis and salvage
WP2341: vitamin B1 (thiamin) biosynthesis and salvage pathway
WP1028: Pentose Phosphate Pathway
WP1147: Pentose Phosphate Pathway
WP122: Pentose Phosphate Pathway
WP1231: Pentose Phosphate Pathway
WP134: Pentose Phosphate Pathway
WP1493: Carbon assimilation C4 pathway
WP1657: Glycerolipid metabolism
WP1658: Glycerophospholipid metabolism
WP1664: Inositol phosphate metabolism
WP1684: Pentose phosphate pathway
WP2185: Purine metabolism
WP220: Ribose and Deoxyribose Phosphate Metabolism
WP2212: Methylerythritol phosphate pathway
WP228: Deoxyribose phosphate metabolism
WP253: Glycolysis
WP260: Glucose-1-phosphate metabolism
WP282: Pentose Phosphate Pathway
WP312: Pentose Phosphate Pathway
WP369: Pentose Phosphate Pathway
WP417: Oxidative Branch of the Pentose Phosphate Pathway
WP421: Pentose Phosphate Pathway
WP575: Anaerobic respiration
WP627: Triacylglycerol Biosynthesis

Related Genes :
[dxr ispC yaeM b0173 JW0168] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[DXR] 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic (1-deoxyxylulose-5-phosphate reductoisomerase) (DOXP reductoisomerase) (DXP reductoisomerase) (EC 1.1.1.267)
[dxr ZMO1150] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[DXR PF14_0641] 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic (1-deoxyxylulose-5-phosphate reductoisomerase) (DOXP reductoisomerase) (DXP reductoisomerase) (EC 1.1.1.267)
[dxr VC_2254] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr Tter_1704] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr OR1_03714] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr MSMEG_2578 MSMEI_2516] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[ilvC Igag_1561] Ketol-acid reductoisomerase (NAD(P)(+)) (KARI) (EC 1.1.1.383) (Acetohydroxy-acid isomeroreductase) (AHIR) (Alpha-keto-beta-hydroxylacyl reductoisomerase) (Ketol-acid reductoisomerase type 1) (Ketol-acid reductoisomerase type I)
[aro-1 aro-2 aro-4 aro-5 aro-9 B14H13.20 NCU016321] Pentafunctional AROM polypeptide [Includes: 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4); 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS); Shikimate kinase (SK) (EC 2.7.1.71); 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10); Shikimate dehydrogenase (EC 1.1.1.25)]
[dxr DLM67_17505] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr DCY07_02540] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr OR37_00166] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr OR214_00370] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr OR16_35707] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr OR221_0911] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr HPHPP1_0459] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr DNK77_13020] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr HPHPH5B_0316] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr HPHPA5_0328] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr ATE51_00872 CC14983A_0411] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr SAMN04487830_103108] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr GY22_15430] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[] Genome polyprotein [Cleaved into: Capsid protein C (Capsid protein) (Core protein); Protein prM (Precursor membrane protein); Peptide pr (Peptide precursor); Small envelope protein M (Matrix protein); Envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Serine protease subunit NS2B (Flavivirin protease NS2B regulatory subunit) (Non-structural protein 2B); Serine protease NS3 (EC 3.4.21.91) (EC 3.6.1.15) (EC 3.6.4.13) (Flavivirin protease NS3 catalytic subunit) (Non-structural protein 3); Non-structural protein 4A (NS4A); Peptide 2k; Non-structural protein 4B (NS4B); RNA-directed RNA polymerase NS5 (EC 2.1.1.56) (EC 2.1.1.57) (EC 2.7.7.48) (Non-structural protein 5)]
[dxr HPHPA4_0326] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr HPHPP4_0423] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr HPHPH4_0327] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr SAMN04515668_4082] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr OUK_0453] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)
[dxr HPHPP2_0313] 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase)

Bibliography :
[15339150] Crystallographic structures of two bisphosphonate:1-deoxyxylulose-5-phosphate reductoisomerase complexes.
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