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26S proteasome regulatory subunit 4 homolog B (26S proteasome AAA-ATPase subunit RPT2b) (26S proteasome subunit 4 homolog B) (Regulatory particle triple-A ATPase subunit 2b)

 PRS4B_ARATH             Reviewed;         443 AA.
Q9SL67; Q8LAV7; Q94JT0;
09-FEB-2010, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
29-SEP-2021, entry version 145.
RecName: Full=26S proteasome regulatory subunit 4 homolog B {ECO:0000305};
AltName: Full=26S proteasome AAA-ATPase subunit RPT2b {ECO:0000303|PubMed:10417703};
AltName: Full=26S proteasome subunit 4 homolog B {ECO:0000305};
AltName: Full=Regulatory particle triple-A ATPase subunit 2b {ECO:0000305};
Name=RPT2B {ECO:0000303|PubMed:10417703};
OrderedLocusNames=At2g20140 {ECO:0000312|Araport:AT2G20140};
ORFNames=T2G17.6 {ECO:0000312|EMBL:AAD24384.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
Nature 402:761-768(1999).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana reference
genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=10417703; DOI=10.1046/j.1365-313x.1999.00479.x;
Fu H., Doelling J.H., Rubin D.M., Vierstra R.D.;
"Structural and functional analysis of the six regulatory particle triple-A
ATPase subunits from the Arabidopsis 26S proteasome.";
Plant J. 18:529-539(1999).
[6]
SUBUNIT, AND IDENTIFICATION BY MASS SPECTROMETRY.
PubMed=14623884; DOI=10.1074/jbc.m311977200;
Yang P., Fu H., Walker J., Papa C.M., Smalle J., Ju Y.-M., Vierstra R.D.;
"Purification of the Arabidopsis 26 S proteasome: biochemical and molecular
analyses revealed the presence of multiple isoforms.";
J. Biol. Chem. 279:6401-6413(2004).
[7]
TISSUE SPECIFICITY.
PubMed=19500299; DOI=10.1111/j.1365-313x.2009.03932.x;
Sonoda Y., Sako K., Maki Y., Yamazaki N., Yamamoto H., Ikeda A.,
Yamaguchi J.;
"Regulation of leaf organ size by the Arabidopsis RPT2a 19S proteasome
subunit.";
Plant J. 60:68-78(2009).
[8]
IDENTIFICATION BY MASS SPECTROMETRY, CHARACTERIZATION OF THE 26S PROTEASOME
COMPLEX, AND SUBUNIT.
PubMed=20516081; DOI=10.1074/jbc.m110.136622;
Book A.J., Gladman N.P., Lee S.S., Scalf M., Smith L.M., Vierstra R.D.;
"Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse
array of plant proteolytic complexes.";
J. Biol. Chem. 285:25554-25569(2010).
[9]
IDENTIFICATION BY MASS SPECTROMETRY, FUNCTION, SUBCELLULAR LOCATION, AND
DISRUPTION PHENOTYPE.
PubMed=22158466; DOI=10.1105/tpc.111.089482;
Lee K.H., Minami A., Marshall R.S., Book A.J., Farmer L.M., Walker J.M.,
Vierstra R.D.;
"The RPT2 subunit of the 26S proteasome directs complex assembly, histone
dynamics, and gametophyte and sporophyte development in Arabidopsis.";
Plant Cell 23:4298-4317(2011).
[10]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=21784786; DOI=10.1093/pcp/pcr093;
Ueda M., Matsui K., Ishiguro S., Kato T., Tabata S., Kobayashi M., Seki M.,
Shinozaki K., Okada K.;
"Arabidopsis RPT2a encoding the 26S proteasome subunit is required for
various aspects of root meristem maintenance, and regulates gametogenesis
redundantly with its homolog, RPT2b.";
Plant Cell Physiol. 52:1628-1640(2011).
-!- FUNCTION: The 26S protease is involved in the ATP-dependent degradation
of ubiquitinated proteins. The regulatory (or ATPase) complex confers
ATP dependency and substrate specificity to the 26S complex
(PubMed:22158466). Acts redundantly with RPT2A in the regulation of
gametogenesis (PubMed:21784786, PubMed:22158466). With RPT2A plays a
critical role in 26S proteasome assembly (PubMed:22158466).
{ECO:0000269|PubMed:21784786, ECO:0000269|PubMed:22158466}.
-!- SUBUNIT: Component of the 19S regulatory particle (RP/PA700) base
subcomplex of the 26S proteasome. The 26S proteasome is composed of a
core protease (CP), known as the 20S proteasome, capped at one or both
ends by the 19S regulatory particle (RP/PA700). The RP/PA700 complex is
composed of at least 17 different subunits in two subcomplexes, the
base and the lid, which form the portions proximal and distal to the
20S proteolytic core, respectively. {ECO:0000269|PubMed:14623884,
ECO:0000269|PubMed:20516081}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:22158466}. Nucleus
{ECO:0000269|PubMed:22158466}.
-!- TISSUE SPECIFICITY: Preferentially expressed in the root and shoot
apical meristem. {ECO:0000269|PubMed:19500299}.
-!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
conditions (PubMed:22158466). The double mutants rpt2a and rpt2b are
blocked in both male and female gametogenesis (PubMed:22158466,
PubMed:21784786). {ECO:0000269|PubMed:21784786,
ECO:0000269|PubMed:22158466}.
-!- SIMILARITY: Belongs to the AAA ATPase family. {ECO:0000305}.
---------------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; AC006081; AAD24384.1; -; Genomic_DNA.
EMBL; CP002685; AEC06970.1; -; Genomic_DNA.
EMBL; AF372977; AAK50114.1; -; mRNA.
EMBL; AY035072; AAK59577.1; -; mRNA.
EMBL; AY056335; AAL07184.1; -; mRNA.
EMBL; AY087584; AAM65126.1; -; mRNA.
PIR; E84585; E84585.
RefSeq; NP_179604.1; NM_127572.4.
SMR; Q9SL67; -.
BioGRID; 1887; 164.
IntAct; Q9SL67; 1.
STRING; 3702.AT2G20140.1; -.
iPTMnet; Q9SL67; -.
PaxDb; Q9SL67; -.
PRIDE; Q9SL67; -.
ProteomicsDB; 226222; -.
EnsemblPlants; AT2G20140.1; AT2G20140.1; AT2G20140.
GeneID; 816533; -.
Gramene; AT2G20140.1; AT2G20140.1; AT2G20140.
KEGG; ath:AT2G20140; -.
Araport; AT2G20140; -.
TAIR; locus:2061639; AT2G20140.
eggNOG; KOG0726; Eukaryota.
HOGENOM; CLU_000688_2_3_1; -.
InParanoid; Q9SL67; -.
OMA; YLAICTE; -.
OrthoDB; 571919at2759; -.
PhylomeDB; Q9SL67; -.
PRO; PR:Q9SL67; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; Q9SL67; baseline and differential.
Genevisible; Q9SL67; AT.
GO; GO:0005829; C:cytosol; IDA:TAIR.
GO; GO:0005739; C:mitochondrion; HDA:TAIR.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0005886; C:plasma membrane; IDA:TAIR.
GO; GO:0000502; C:proteasome complex; IDA:TAIR.
GO; GO:0008540; C:proteasome regulatory particle, base subcomplex; IBA:GO_Central.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0036402; F:proteasome-activating activity; IBA:GO_Central.
GO; GO:0017025; F:TBP-class protein binding; IBA:GO_Central.
GO; GO:0007292; P:female gamete generation; IGI:TAIR.
GO; GO:0010078; P:maintenance of root meristem identity; IMP:TAIR.
GO; GO:0048232; P:male gamete generation; IGI:TAIR.
GO; GO:0030163; P:protein catabolic process; IEA:InterPro.
Gene3D; 3.40.50.300; -; 1.
InterPro; IPR005937; 26S_Psome_P45-like.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR041569; AAA_lid_3.
InterPro; IPR003959; ATPase_AAA_core.
InterPro; IPR003960; ATPase_AAA_CS.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR032501; Prot_ATP_ID_OB.
Pfam; PF00004; AAA; 1.
Pfam; PF17862; AAA_lid_3; 1.
Pfam; PF16450; Prot_ATP_ID_OB; 1.
SMART; SM00382; AAA; 1.
SUPFAM; SSF52540; SSF52540; 1.
TIGRFAMs; TIGR01242; 26Sp45; 1.
PROSITE; PS00674; AAA; 1.
1: Evidence at protein level;
ATP-binding; Cytoplasm; Isopeptide bond; Nucleotide-binding; Nucleus;
Proteasome; Reference proteome; Ubl conjugation.
CHAIN 1..443
/note="26S proteasome regulatory subunit 4 homolog B"
/id="PRO_0000391484"
NP_BIND 229..236
/note="ATP"
/evidence="ECO:0000255"
REGION 1..55
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
REGION 87..108
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
COMPBIAS 14..32
/note="Basic and acidic residues"
/evidence="ECO:0000256|SAM:MobiDB-lite"
COMPBIAS 87..105
/note="Basic and acidic residues"
/evidence="ECO:0000256|SAM:MobiDB-lite"
CROSSLNK 296
/note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
G-Cter in ubiquitin)"
/evidence="ECO:0000250|UniProtKB:Q9SEI2"
CROSSLNK 433
/note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
G-Cter in ubiquitin)"
/evidence="ECO:0000250|UniProtKB:Q9SEI2"
CONFLICT 10
/note="N -> H (in Ref. 4; AAM65126)"
/evidence="ECO:0000305"
CONFLICT 177
/note="M -> V (in Ref. 3; AAK50114)"
/evidence="ECO:0000305"
CONFLICT 285
/note="V -> G (in Ref. 4; AAM65126)"
/evidence="ECO:0000305"
SEQUENCE 443 AA; 49347 MW; EEA39B499CED5B99 CRC64;
MGQGPSGGLN RQGDRKPDGG EKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK
CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS KVDDLRGTPM SVGNLEELID
ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE
KAPLESYADI GGLEAQIQEI KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK
AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD
IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA ICTEAGLLAL RERRMKVTHV
DFKKAKEKVM FKKKEGVPEG LYM


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Related Genes :
[RPT2B At2g20140 T2G17.6] 26S proteasome regulatory subunit 4 homolog B (26S proteasome AAA-ATPase subunit RPT2b) (26S proteasome subunit 4 homolog B) (Regulatory particle triple-A ATPase subunit 2b)
[RPT2A HLR At4g29040 F19B15.70 F25O24.6] 26S proteasome regulatory subunit 4 homolog A (26S proteasome AAA-ATPase subunit RPT2a) (26S proteasome subunit 4 homolog A) (Protein HALTED ROOT) (Regulatory particle triple-A ATPase subunit 2a)
[RPT5B TBP1 At1g09100 F7G19.2] 26S proteasome regulatory subunit 6A homolog B (26S proteasome AAA-ATPase subunit RPT5b) (Proteasome 26S subunit 6A homolog B) (Regulatory particle triple-A ATPase subunit 5b) (Tat-binding protein 1 homolog B) (TBP-1 homolog B)
[RPT5A ATS6A.2 TBP1 At3g05530 F22F7.1] 26S proteasome regulatory subunit 6A homolog A (26S proteasome AAA-ATPase subunit RPT5a) (Proteasome 26S subunit 6A homolog A) (Regulatory particle triple-A ATPase subunit 5a) (Tat-binding protein 1 homolog A) (TBP-1 homolog A)
[RPT3 BIM409 At5g58290 MCK7.16] 26S proteasome regulatory subunit 6B homolog (26S protease subunit 6B homolog) (26S proteasome AAA-ATPase subunit RPT3) (Protein BMAA insensitive morphology 409) (Regulatory particle triple-A ATPase subunit 3)
[RPT4A At5g43010 MBD2.21] 26S proteasome regulatory subunit 10B homolog A (26S proteasome AAA-ATPase subunit RPT4a) (26S proteasome subunit 10B homolog A) (Regulatory particle triple-A ATPase subunit 4a)
[RPT4B At1g45000 F27F5.8] 26S proteasome regulatory subunit S10B homolog B (26S proteasome AAA-ATPase subunit RPT4b) (26S proteasome subunit S10B homolog B) (Regulatory particle triple-A ATPase subunit 4b)
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[RPN12A At1g64520 F1N19.9] 26S proteasome non-ATPase regulatory subunit 8 homolog A (26S proteasome regulatory subunit RPN12a) (AtRPN12a) (26S proteasome regulatory subunit S14 homolog A)
[RPN1A At2g20580 F23N11.10] 26S proteasome non-ATPase regulatory subunit 2 homolog A (26S proteasome regulatory subunit RPN1a) (AtRPN1a) (26S proteasome regulatory subunit S2 homolog A)
[PSMC5 SUG1] 26S proteasome regulatory subunit 8 (26S proteasome AAA-ATPase subunit RPT6) (Proteasome 26S subunit ATPase 5) (Proteasome subunit p45) (Thyroid hormone receptor-interacting protein 1) (TRIP1) (p45/SUG)
[PSMC6 SUG2] 26S proteasome regulatory subunit 10B (26S proteasome AAA-ATPase subunit RPT4) (Proteasome 26S subunit ATPase 6) (Proteasome subunit p42)
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[PSMD7 MOV34L] 26S proteasome non-ATPase regulatory subunit 7 (26S proteasome regulatory subunit RPN8) (26S proteasome regulatory subunit S12) (Mov34 protein homolog) (Proteasome subunit p40)
[PSMC1] 26S proteasome regulatory subunit 4 (P26s4) (26S proteasome AAA-ATPase subunit RPT2) (Proteasome 26S subunit ATPase 1)
[PSMD6 KIAA0107 PFAAP4] 26S proteasome non-ATPase regulatory subunit 6 (26S proteasome regulatory subunit RPN7) (26S proteasome regulatory subunit S10) (Breast cancer-associated protein SGA-113M) (Phosphonoformate immuno-associated protein 4) (Proteasome regulatory particle subunit p44S10) (p42A)
[RPN8A AE3 MOV34 At5g05780 MJJ3.19] 26S proteasome non-ATPase regulatory subunit 7 homolog A (26S proteasome regulatory subunit RPN8a) (AtRPN8a) (Protein ASYMMETRIC LEAVES ENHANCER 3) (Protein MOV34) (AtMOV34)
[Psmc5 Sug1] 26S proteasome regulatory subunit 8 (26S proteasome AAA-ATPase subunit RPT6) (Proteasome 26S subunit ATPase 5) (Proteasome subunit p45) (p45/SUG) (mSUG1)
[RPT6A SUG1 At5g19990 F28I16.140] 26S proteasome regulatory subunit 8 homolog A (26S proteasome AAA-ATPase subunit RPT6a) (26S proteasome subunit 8 homolog A) (Regulatory particle triple-A ATPase subunit 6a)
[Rpn10 PROS-54 Pros54 CG7619] 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit RPN10) (26S proteasome regulatory subunit S5A) (54 kDa subunit of mu particle) (Multiubiquitin chain-binding protein) (p54)
[PSMD14 POH1] 26S proteasome non-ATPase regulatory subunit 14 (EC 3.4.19.-) (26S proteasome regulatory subunit RPN11) (26S proteasome-associated PAD1 homolog 1)
[Psmc1] 26S proteasome regulatory subunit 4 (P26s4) (26S proteasome AAA-ATPase subunit RPT2) (Proteasome 26S subunit ATPase 1)
[PSMC3 TBP1] 26S proteasome regulatory subunit 6A (26S proteasome AAA-ATPase subunit RPT5) (Proteasome 26S subunit ATPase 3) (Proteasome subunit P50) (Tat-binding protein 1) (TBP-1)
[RPT1A At1g53750 F22G10.2 T18A20.1] 26S proteasome regulatory subunit 7 homolog A (26S proteasome AAA-ATPase subunit RPT1a) (26S proteasome subunit 7 homolog A) (Regulatory particle triple-A ATPase subunit 1a)
[PSMD1] 26S proteasome non-ATPase regulatory subunit 1 (26S proteasome regulatory subunit RPN2) (26S proteasome regulatory subunit S1) (26S proteasome subunit p112)
[PSMD4 MCB1] 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit RPN10) (26S proteasome regulatory subunit S5A) (Antisecretory factor 1) (AF) (ASF) (Multiubiquitin chain-binding protein)
[PSMC2 MSS1] 26S proteasome regulatory subunit 7 (26S proteasome AAA-ATPase subunit RPT1) (Proteasome 26S subunit ATPase 2) (Protein MSS1)
[RPN5B At5g64760 MVP7.9] 26S proteasome non-ATPase regulatory subunit 12 homolog B (26S proteasome regulatory subunit RPN5b) (AtRPN5b) (26S proteasome regulatory subunit p55 homolog B)
[Psmc5 Sug1] 26S proteasome regulatory subunit 8 (26S proteasome AAA-ATPase subunit RPT6) (Proteasome 26S subunit ATPase 5) (Proteasome subunit p45) (Thyroid hormone receptor-interacting protein 1) (TRIP1) (p45/SUG)
[RPN2B At1g04810 F13M7.20] 26S proteasome non-ATPase regulatory subunit 1 homolog B (26S proteasome regulatory subunit RPN2b) (AtRPN2b) (26S proteasome regulatory subunit S1 homolog B)

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