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26S proteasome regulatory subunit 6A homolog B (26S proteasome AAA-ATPase subunit RPT5b) (Proteasome 26S subunit 6A homolog B) (Regulatory particle triple-A ATPase subunit 5b) (Tat-binding protein 1 homolog B) (TBP-1 homolog B)

 PS6AB_ARATH             Reviewed;         423 AA.
O04019; Q93V77;
15-JUL-1998, integrated into UniProtKB/Swiss-Prot.
09-FEB-2010, sequence version 3.
23-FEB-2022, entry version 148.
RecName: Full=26S proteasome regulatory subunit 6A homolog B;
AltName: Full=26S proteasome AAA-ATPase subunit RPT5b;
AltName: Full=Proteasome 26S subunit 6A homolog B;
AltName: Full=Regulatory particle triple-A ATPase subunit 5b;
AltName: Full=Tat-binding protein 1 homolog B;
Short=TBP-1 homolog B;
Name=RPT5B; Synonyms=TBP1; OrderedLocusNames=At1g09100; ORFNames=F7G19.2;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=cv. Wassilewskija;
PubMed=19223514; DOI=10.1105/tpc.108.062372;
Gallois J.-L., Guyon-Debast A., Lecureuil A., Vezon D., Carpentier V.,
Bonhomme S., Guerche P.;
"The Arabidopsis proteasome RPT5 subunits are essential for gametophyte
development and show accession-dependent redundancy.";
Plant Cell 21:442-459(2009).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
Nature 408:816-820(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana reference
genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=10417703; DOI=10.1046/j.1365-313x.1999.00479.x;
Fu H., Doelling J.H., Rubin D.M., Vierstra R.D.;
"Structural and functional analysis of the six regulatory particle triple-A
ATPase subunits from the Arabidopsis 26S proteasome.";
Plant J. 18:529-539(1999).
[6]
SUBUNIT, AND IDENTIFICATION BY MASS SPECTROMETRY.
PubMed=14623884; DOI=10.1074/jbc.m311977200;
Yang P., Fu H., Walker J., Papa C.M., Smalle J., Ju Y.-M., Vierstra R.D.;
"Purification of the Arabidopsis 26 S proteasome: biochemical and molecular
analyses revealed the presence of multiple isoforms.";
J. Biol. Chem. 279:6401-6413(2004).
[7]
INTERACTION WITH HXK1, SUBCELLULAR LOCATION, AND FUNCTION.
PubMed=17081979; DOI=10.1016/j.cell.2006.09.028;
Cho Y.H., Yoo S.D., Sheen J.;
"Regulatory functions of nuclear hexokinase1 complex in glucose
signaling.";
Cell 127:579-589(2006).
[8]
IDENTIFICATION BY MASS SPECTROMETRY, CHARACTERIZATION OF THE 26S PROTEASOME
COMPLEX, AND SUBUNIT.
PubMed=20516081; DOI=10.1074/jbc.m110.136622;
Book A.J., Gladman N.P., Lee S.S., Scalf M., Smith L.M., Vierstra R.D.;
"Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse
array of plant proteolytic complexes.";
J. Biol. Chem. 285:25554-25569(2010).
-!- FUNCTION: The 26S proteasome is involved in the ATP-dependent
degradation of ubiquitinated proteins. The regulatory (or ATPase)
complex confers ATP dependency and substrate specificity to the 26S
complex. {ECO:0000269|PubMed:17081979}.
-!- SUBUNIT: Component of the 19S regulatory particle (RP/PA700) base
subcomplex of the 26S proteasome. The 26S proteasome is composed of a
core protease (CP), known as the 20S proteasome, capped at one or both
ends by the 19S regulatory particle (RP/PA700). The RP/PA700 complex is
composed of at least 17 different subunits in two subcomplexes, the
base and the lid, which form the portions proximal and distal to the
20S proteolytic core, respectively. {ECO:0000269|PubMed:14623884,
ECO:0000269|PubMed:20516081}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Nucleus {ECO:0000250}.
-!- SIMILARITY: Belongs to the AAA ATPase family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAB70397.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
---------------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
---------------------------------------------------------------------------
EMBL; EU980096; ACJ66733.1; -; Genomic_DNA.
EMBL; AC000106; AAB70397.1; ALT_INIT; Genomic_DNA.
EMBL; CP002684; AEE28396.1; -; Genomic_DNA.
EMBL; AY050423; AAK91439.1; -; mRNA.
EMBL; AF412095; AAL06548.1; -; mRNA.
EMBL; AY124813; AAM70522.1; -; mRNA.
PIR; C86223; C86223.
RefSeq; NP_172384.1; NM_100781.5.
SMR; O04019; -.
BioGRID; 22672; 91.
IntAct; O04019; 5.
STRING; 3702.AT1G09100.1; -.
MoonProt; O04019; -.
iPTMnet; O04019; -.
MetOSite; O04019; -.
PaxDb; O04019; -.
PRIDE; O04019; -.
ProteomicsDB; 226343; -.
EnsemblPlants; AT1G09100.1; AT1G09100.1; AT1G09100.
GeneID; 837431; -.
Gramene; AT1G09100.1; AT1G09100.1; AT1G09100.
KEGG; ath:AT1G09100; -.
Araport; AT1G09100; -.
TAIR; locus:2036099; AT1G09100.
eggNOG; KOG0652; Eukaryota.
HOGENOM; CLU_000688_2_4_1; -.
InParanoid; O04019; -.
OMA; KPTEQYT; -.
OrthoDB; 571919at2759; -.
PhylomeDB; O04019; -.
PRO; PR:O04019; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; O04019; baseline and differential.
Genevisible; O04019; AT.
GO; GO:0005829; C:cytosol; HDA:TAIR.
GO; GO:0005576; C:extracellular region; HDA:TAIR.
GO; GO:0005634; C:nucleus; IDA:CAFA.
GO; GO:0000502; C:proteasome complex; IDA:TAIR.
GO; GO:0008540; C:proteasome regulatory particle, base subcomplex; IBA:GO_Central.
GO; GO:0032991; C:protein-containing complex; IMP:CAFA.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
GO; GO:0036402; F:proteasome-activating activity; IBA:GO_Central.
GO; GO:0009553; P:embryo sac development; IGI:TAIR.
GO; GO:0010255; P:glucose mediated signaling pathway; IMP:TAIR.
GO; GO:0009555; P:pollen development; IGI:TAIR.
GO; GO:0010498; P:proteasomal protein catabolic process; IGI:TAIR.
GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IBA:GO_Central.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IMP:CAFA.
Gene3D; 3.40.50.300; -; 1.
InterPro; IPR005937; 26S_Psome_P45-like.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR041569; AAA_lid_3.
InterPro; IPR003959; ATPase_AAA_core.
InterPro; IPR003960; ATPase_AAA_CS.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR032501; Prot_ATP_ID_OB.
Pfam; PF00004; AAA; 1.
Pfam; PF17862; AAA_lid_3; 1.
Pfam; PF16450; Prot_ATP_ID_OB; 1.
SMART; SM00382; AAA; 1.
SUPFAM; SSF52540; SSF52540; 1.
TIGRFAMs; TIGR01242; 26Sp45; 1.
PROSITE; PS00674; AAA; 1.
1: Evidence at protein level;
ATP-binding; Cytoplasm; Isopeptide bond; Nucleotide-binding; Nucleus;
Phosphoprotein; Proteasome; Reference proteome; Ubl conjugation.
CHAIN 1..423
/note="26S proteasome regulatory subunit 6A homolog B"
/id="PRO_0000084703"
NP_BIND 211..218
/note="ATP"
/evidence="ECO:0000255"
MOD_RES 18
/note="Phosphoserine"
/evidence="ECO:0000250|UniProtKB:Q9SEI4"
CROSSLNK 234
/note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
G-Cter in ubiquitin)"
/evidence="ECO:0000250|UniProtKB:Q9SEI3"
CROSSLNK 278
/note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
G-Cter in ubiquitin)"
/evidence="ECO:0000250|UniProtKB:Q9SEI2"
CROSSLNK 415
/note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
G-Cter in ubiquitin)"
/evidence="ECO:0000250|UniProtKB:Q9SEI2"
SEQUENCE 423 AA; 47038 MW; E7236A9547CE1EA7 CRC64;
MATAMAEDTS FEGDQLASMT TDDIGRASRL LANEIRILKE ESQRTNLDLE SVKEKIKENQ
EKIKLNKQLP YLVGNIVEIL EMSPEDDAEE DGANIDLDSQ RKGKCVVLKT STRQTIFLPV
VGLVDPDTLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ
ELVEAIVLPM THKEQFEKLG IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL
VQMFIGDGAK LVRDAFLLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARGRIL QIHSRKMNVN
ADVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN HEDFNEGIIQ VQAKKKASLN
YYA


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[RPT5B TBP1 At1g09100 F7G19.2] 26S proteasome regulatory subunit 6A homolog B (26S proteasome AAA-ATPase subunit RPT5b) (Proteasome 26S subunit 6A homolog B) (Regulatory particle triple-A ATPase subunit 5b) (Tat-binding protein 1 homolog B) (TBP-1 homolog B)
[RPT5A ATS6A.2 TBP1 At3g05530 F22F7.1] 26S proteasome regulatory subunit 6A homolog A (26S proteasome AAA-ATPase subunit RPT5a) (Proteasome 26S subunit 6A homolog A) (Regulatory particle triple-A ATPase subunit 5a) (Tat-binding protein 1 homolog A) (TBP-1 homolog A)
[PSMC3 TBP1] 26S proteasome regulatory subunit 6A (26S proteasome AAA-ATPase subunit RPT5) (Proteasome 26S subunit ATPase 3) (Proteasome subunit P50) (Tat-binding protein 1) (TBP-1)
[RPT2B At2g20140 T2G17.6] 26S proteasome regulatory subunit 4 homolog B (26S proteasome AAA-ATPase subunit RPT2b) (26S proteasome subunit 4 homolog B) (Regulatory particle triple-A ATPase subunit 2b)
[RPT2A HLR At4g29040 F19B15.70 F25O24.6] 26S proteasome regulatory subunit 4 homolog A (26S proteasome AAA-ATPase subunit RPT2a) (26S proteasome subunit 4 homolog A) (Protein HALTED ROOT) (Regulatory particle triple-A ATPase subunit 2a)
[RPT5 YTA1 YOR117W O3258 YOR3258W] 26S proteasome regulatory subunit 6A (Tat-binding protein homolog 1) (TBP-1)
[RPT4A At5g43010 MBD2.21] 26S proteasome regulatory subunit 10B homolog A (26S proteasome AAA-ATPase subunit RPT4a) (26S proteasome subunit 10B homolog A) (Regulatory particle triple-A ATPase subunit 4a)
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[RPT3 YNT1 YTA2 YDR394W D9509.14] 26S proteasome regulatory subunit 6B homolog (Protein YNT1) (Tat-binding homolog 2)
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[RPT6A SUG1 At5g19990 F28I16.140] 26S proteasome regulatory subunit 8 homolog A (26S proteasome AAA-ATPase subunit RPT6a) (26S proteasome subunit 8 homolog A) (Regulatory particle triple-A ATPase subunit 6a)
[RPN12A At1g64520 F1N19.9] 26S proteasome non-ATPase regulatory subunit 8 homolog A (26S proteasome regulatory subunit RPN12a) (AtRPN12a) (26S proteasome regulatory subunit S14 homolog A)
[RPN1A At2g20580 F23N11.10] 26S proteasome non-ATPase regulatory subunit 2 homolog A (26S proteasome regulatory subunit RPN1a) (AtRPN1a) (26S proteasome regulatory subunit S2 homolog A)
[PSMC4 MIP224 TBP7] 26S proteasome regulatory subunit 6B (26S proteasome AAA-ATPase subunit RPT3) (MB67-interacting protein) (MIP224) (Proteasome 26S subunit ATPase 4) (Tat-binding protein 7) (TBP-7)
[RPN5B At5g64760 MVP7.9] 26S proteasome non-ATPase regulatory subunit 12 homolog B (26S proteasome regulatory subunit RPN5b) (AtRPN5b) (26S proteasome regulatory subunit p55 homolog B)
[RPT4B At1g45000 F27F5.8] 26S proteasome regulatory subunit S10B homolog B (26S proteasome AAA-ATPase subunit RPT4b) (26S proteasome subunit S10B homolog B) (Regulatory particle triple-A ATPase subunit 4b)
[RPT6 CIM3 CRL3 SUG1 TBPY TBY1 YGL048C] 26S proteasome regulatory subunit 8 homolog (Protein CIM3) (Protein SUG1) (Tat-binding protein TBY1)
[RPT1 CIM5 YTA3 YKL145W] 26S proteasome regulatory subunit 7 homolog (Protein CIM5) (Tat-binding homolog 3)
[Psmc5 Sug1] 26S proteasome regulatory subunit 8 (26S proteasome AAA-ATPase subunit RPT6) (Proteasome 26S subunit ATPase 5) (Proteasome subunit p45) (p45/SUG) (mSUG1)
[RPT2 YHS4 YTA5 YDL007W D2920] 26S proteasome regulatory subunit 4 homolog (Tat-binding homolog 5)
[PSMD7 MOV34L] 26S proteasome non-ATPase regulatory subunit 7 (26S proteasome regulatory subunit RPN8) (26S proteasome regulatory subunit S12) (Mov34 protein homolog) (Proteasome subunit p40)
[PSMC5 SUG1] 26S proteasome regulatory subunit 8 (26S proteasome AAA-ATPase subunit RPT6) (Proteasome 26S subunit ATPase 5) (Proteasome subunit p45) (Thyroid hormone receptor-interacting protein 1) (TRIP1) (p45/SUG)
[Psmc3 Tbp1] 26S proteasome regulatory subunit 6A (26S proteasome AAA-ATPase subunit RPT5) (Proteasome 26S subunit ATPase 3) (Tat-binding protein 1) (TBP-1)
[RPN8A AE3 MOV34 At5g05780 MJJ3.19] 26S proteasome non-ATPase regulatory subunit 7 homolog A (26S proteasome regulatory subunit RPN8a) (AtRPN8a) (Protein ASYMMETRIC LEAVES ENHANCER 3) (Protein MOV34) (AtMOV34)
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[PSMD14 POH1] 26S proteasome non-ATPase regulatory subunit 14 (EC 3.4.19.-) (26S proteasome regulatory subunit RPN11) (26S proteasome-associated PAD1 homolog 1)
[RPT6B SUG1 At5g20000 F28I16.150] 26S proteasome regulatory subunit 8 homolog B (26S proteasome AAA-ATPase subunit RPT6b) (26S proteasome subunit 8 homolog B) (Regulatory particle triple-A ATPase subunit 6b)
[PSMC6 SUG2] 26S proteasome regulatory subunit 10B (26S proteasome AAA-ATPase subunit RPT4) (Proteasome 26S subunit ATPase 6) (Proteasome subunit p42)
[PSMD1] 26S proteasome non-ATPase regulatory subunit 1 (26S proteasome regulatory subunit RPN2) (26S proteasome regulatory subunit S1) (26S proteasome subunit p112)

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