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Ammonium transporter 2 (AtAMT2)

 AMT2_ARATH              Reviewed;         475 AA.
Q9M6N7; Q1JPN2;
26-JUL-2002, integrated into UniProtKB/Swiss-Prot.
24-MAY-2004, sequence version 2.
13-FEB-2019, entry version 125.
RecName: Full=Ammonium transporter 2;
Short=AtAMT2;
Name=AMT2; OrderedLocusNames=At2g38290; ORFNames=F16M14.22;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND CHARACTERIZATION.
STRAIN=cv. C24; TISSUE=Root;
PubMed=10675553; DOI=10.1016/S0014-5793(00)01153-4;
Sohlenkamp C., Shelden M.C., Howitt S.M., Udvardi M.K.;
"Characterization of Arabidopsis AtAMT2, a novel ammonium transporter
in plants.";
FEBS Lett. 467:273-278(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
Shinn P., Chen H., Kim C.J., Quinitio C., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
PubMed=14993207; DOI=10.1101/gr.1515604;
Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G.,
Caboche M., Weissenbach J., Salanoubat M.;
"Whole genome sequence comparisons and 'full-length' cDNA sequences: a
combined approach to evaluate and improve Arabidopsis genome
annotation.";
Genome Res. 14:406-413(2004).
[7]
FUNCTION, BIOPHYSICOCHEMICAL PROPERTIES, SUBCELLULAR LOCATION, TISSUE
SPECIFICITY, AND INDUCTION.
PubMed=12481062; DOI=10.1104/pp.008599;
Sohlenkamp C., Wood C.C., Roeb G.W., Udvardi M.K.;
"Characterization of Arabidopsis AtAMT2, a high-affinity ammonium
transporter of the plasma membrane.";
Plant Physiol. 130:1788-1796(2002).
-!- FUNCTION: High affinity ammonium transporter that may play an
important role in moving ammonium between the apoplast and
symplast of cells throughout the plant. Does not transport
methylammonium. {ECO:0000269|PubMed:12481062}.
-!- BIOPHYSICOCHEMICAL PROPERTIES:
Kinetic parameters:
KM=21 uM for ammonium chloride (at external pH 6.1)
{ECO:0000269|PubMed:12481062};
Note=Measured in yeast knockout mutant YCW012.;
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:12481062};
Multi-pass membrane protein {ECO:0000269|PubMed:12481062}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9M6N7-1; Sequence=Displayed;
Name=2;
IsoId=Q9M6N7-2; Sequence=VSP_038202;
Note=No experimental confirmation available.;
-!- TISSUE SPECIFICITY: Higher expression in shoots than roots.
{ECO:0000269|PubMed:12481062}.
-!- INDUCTION: By nitrogen deprivation in roots.
{ECO:0000269|PubMed:12481062}.
-!- SIMILARITY: Belongs to the ammonia transporter channel (TC
1.A.11.2) family. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; AF182039; AAF37192.1; -; mRNA.
EMBL; AC003028; AAM14857.1; -; Genomic_DNA.
EMBL; CP002685; AEC09518.1; -; Genomic_DNA.
EMBL; CP002685; AEC09519.1; -; Genomic_DNA.
EMBL; BT025321; ABF57277.1; -; mRNA.
EMBL; AK226212; BAE98377.1; -; mRNA.
EMBL; BX819203; -; NOT_ANNOTATED_CDS; mRNA.
PIR; T01260; T01260.
RefSeq; NP_181363.1; NM_129385.5. [Q9M6N7-1]
RefSeq; NP_973634.1; NM_201905.1. [Q9M6N7-2]
UniGene; At.11996; -.
UniGene; At.70096; -.
ProteinModelPortal; Q9M6N7; -.
BioGrid; 3751; 4.
IntAct; Q9M6N7; 4.
STRING; 3702.AT2G38290.1; -.
TCDB; 1.A.11.2.2; the ammonium transporter channel (amt) family.
PaxDb; Q9M6N7; -.
PRIDE; Q9M6N7; -.
EnsemblPlants; AT2G38290.1; AT2G38290.1; AT2G38290. [Q9M6N7-1]
EnsemblPlants; AT2G38290.2; AT2G38290.2; AT2G38290. [Q9M6N7-2]
GeneID; 818409; -.
Gramene; AT2G38290.1; AT2G38290.1; AT2G38290. [Q9M6N7-1]
Gramene; AT2G38290.2; AT2G38290.2; AT2G38290. [Q9M6N7-2]
KEGG; ath:AT2G38290; -.
Araport; AT2G38290; -.
TAIR; locus:2042917; AT2G38290.
eggNOG; KOG0682; Eukaryota.
eggNOG; COG0004; LUCA.
HOGENOM; HOG000017736; -.
InParanoid; Q9M6N7; -.
KO; K03320; -.
OMA; FLLCWTT; -.
OrthoDB; 910733at2759; -.
PhylomeDB; Q9M6N7; -.
SABIO-RK; Q9M6N7; -.
PRO; PR:Q9M6N7; -.
Proteomes; UP000006548; Chromosome 2.
Genevisible; Q9M6N7; AT.
GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
GO; GO:0005886; C:plasma membrane; IDA:TAIR.
GO; GO:0009506; C:plasmodesma; IDA:TAIR.
GO; GO:0008519; F:ammonium transmembrane transporter activity; IBA:GO_Central.
GO; GO:0015398; F:high-affinity secondary active ammonium transmembrane transporter activity; IDA:TAIR.
GO; GO:0015696; P:ammonium transport; TAS:TAIR.
GO; GO:0019740; P:nitrogen utilization; IBA:GO_Central.
GO; GO:0009624; P:response to nematode; IEP:TAIR.
Gene3D; 1.10.3430.10; -; 1.
InterPro; IPR029020; Ammonium/urea_transptr.
InterPro; IPR001905; Ammonium_transpt.
InterPro; IPR018047; Ammonium_transpt_CS.
InterPro; IPR024041; NH4_transpt_AmtB-like_dom.
InterPro; IPR002229; RhesusRHD.
Pfam; PF00909; Ammonium_transp; 1.
PRINTS; PR00342; RHESUSRHD.
TIGRFAMs; TIGR00836; amt; 1.
PROSITE; PS01219; AMMONIUM_TRANSP; 1.
1: Evidence at protein level;
Alternative splicing; Ammonia transport; Cell membrane;
Complete proteome; Membrane; Polymorphism; Reference proteome;
Transmembrane; Transmembrane helix; Transport.
CHAIN 1 475 Ammonium transporter 2.
/FTId=PRO_0000139747.
TRANSMEM 27 47 Helical. {ECO:0000255}.
TRANSMEM 55 75 Helical. {ECO:0000255}.
TRANSMEM 120 140 Helical. {ECO:0000255}.
TRANSMEM 148 168 Helical. {ECO:0000255}.
TRANSMEM 183 203 Helical. {ECO:0000255}.
TRANSMEM 218 238 Helical. {ECO:0000255}.
TRANSMEM 254 274 Helical. {ECO:0000255}.
TRANSMEM 279 299 Helical. {ECO:0000255}.
TRANSMEM 302 322 Helical. {ECO:0000255}.
TRANSMEM 336 356 Helical. {ECO:0000255}.
TRANSMEM 389 409 Helical. {ECO:0000255}.
VAR_SEQ 1 116 Missing (in isoform 2).
{ECO:0000303|PubMed:14993207}.
/FTId=VSP_038202.
VARIANT 95 95 D -> N (in strain: cv. C24).
CONFLICT 369 369 P -> L (in Ref. 6; BX819203).
{ECO:0000305}.
SEQUENCE 475 AA; 50768 MW; A4958B0A8D2CAE60 CRC64;
MAGAYDPSLP EVPEWLNKGD NAWQLTAATL VGLQSMPGLV ILYASIVKKK WAVNSAFMAL
YAFAAVLLCW VLLCYKMAFG EELLPFWGKG GPAFDQGYLK GQAKIPNSNV AAPYFPMATL
VYFQFTFAAI TTILVAGSVL GRMNIKAWMA FVPLWLIFSY TVGAYSIWGG GFLYQWGVID
YSGGYVIHLS SGVAGFVAAY WVGPRPKADR ERFPPNNVLL MLAGAGLLWM GWSGFNGGAP
YAANLTSSIA VLNTNLSAAT SLLVWTTLDV IFFGKPSVIG AIQGMVTGLA GVTPGAGLIQ
TWAAIIIGVV SGTAPWASMM IIHKKSALLQ KVDDTLAVFY THAVAGLLGG IMTGLFAHPD
LCVLVLPLPA TRGAFYGGNG GKQLLKQLAG AAFIAVWNVV STTIILLAIR VFIPLRMAEE
ELGIGDDAAH GEEAYALWGD GEKFDATRHV QQFERDQEAA HPSYVHGARG VTIVL


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CSB-EL019665BO Bovine Ammonium transporter Rh type A(RHAG) ELISA kit 96T

Kits Elisa; taq POLYMERASE

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Pathways :
WP1455: Serotonin Transporter Activity
WP1493: Carbon assimilation C4 pathway
WP1616: ABC transporters
WP1680: Oxidative phosphorylation
WP1689: Porphyrin and chlorophyll metabolism
WP1713: Two-component system
WP2344: vitamin B6 (pyridoxine, pyridoxal, pyridoxamine) biosynthesis and salvage pathway
WP2345: vitamin B7 (biotin) biosynthesis pathway
WP2347: vitamin B5 (pantothenate) and CoA biosynthesis Pathway
WP2349: vitamin B3 (niacin), NAD and NADP biosynthesis pathway

Related Genes :
[RHAG RH50] Ammonium transporter Rh type A (Erythrocyte membrane glycoprotein Rh50) (Erythrocyte plasma membrane 50 kDa glycoprotein) (Rh50A) (Rhesus blood group family type A glycoprotein) (Rh family type A glycoprotein) (Rh type A glycoprotein) (Rhesus blood group-associated ammonia channel) (Rhesus blood group-associated glycoprotein) (CD antigen CD241)
[ppnP OR1_03385] Pyrimidine/purine nucleoside phosphorylase (EC 2.4.2.1) (EC 2.4.2.2) (Adenosine phosphorylase) (Cytidine phosphorylase) (Guanosine phosphorylase) (EC 2.4.2.15) (Inosine phosphorylase) (Thymidine phosphorylase) (EC 2.4.2.4) (Uridine phosphorylase) (EC 2.4.2.3) (Xanthosine phosphorylase)
[al-3 B8P8.010 NCU01427] Geranylgeranyl pyrophosphate synthase (GGPP synthase) (GGPPSase) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase) (Albino-3 protein) (Dimethylallyltranstransferase) (EC 2.5.1.1) (Farnesyl diphosphate synthase) (Farnesyltranstransferase) (EC 2.5.1.29) (Geranylgeranyl diphosphate synthase) (Geranyltranstransferase) (EC 2.5.1.10)
[al-2 B22I21.230 NCU00585] Bifunctional lycopene cyclase/phytoene synthase (Protein albino-2) [Includes: Lycopene beta-cyclase (EC 5.5.1.19) (Carotene cyclase) (Lycopene cyclase); Phytoene synthase (EC 2.5.1.32)]
[ppnP OR214_03073] Pyrimidine/purine nucleoside phosphorylase (EC 2.4.2.1) (EC 2.4.2.2) (Adenosine phosphorylase) (Cytidine phosphorylase) (Guanosine phosphorylase) (EC 2.4.2.15) (Inosine phosphorylase) (Thymidine phosphorylase) (EC 2.4.2.4) (Uridine phosphorylase) (EC 2.4.2.3) (Xanthosine phosphorylase)
[KMT2A ALL1 CXXC7 HRX HTRX MLL MLL1 TRX1] Histone-lysine N-methyltransferase 2A (Lysine N-methyltransferase 2A) (EC 2.1.1.43) (ALL-1) (CXXC-type zinc finger protein 7) (Myeloid/lymphoid or mixed-lineage leukemia) (Myeloid/lymphoid or mixed-lineage leukemia protein 1) (Trithorax-like protein) (Zinc finger protein HRX) [Cleaved into: MLL cleavage product N320 (N-terminal cleavage product of 320 kDa) (p320); MLL cleavage product C180 (C-terminal cleavage product of 180 kDa) (p180)]
[ppnP OR16_09104] Pyrimidine/purine nucleoside phosphorylase (EC 2.4.2.1) (EC 2.4.2.2) (Adenosine phosphorylase) (Cytidine phosphorylase) (Guanosine phosphorylase) (EC 2.4.2.15) (Inosine phosphorylase) (Thymidine phosphorylase) (EC 2.4.2.4) (Uridine phosphorylase) (EC 2.4.2.3) (Xanthosine phosphorylase)
[aro-1 aro-2 aro-4 aro-5 aro-9 B14H13.20 NCU016321] Pentafunctional AROM polypeptide [Includes: 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4); 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS); Shikimate kinase (SK) (EC 2.7.1.71); 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10); Shikimate dehydrogenase (EC 1.1.1.25)]
[ribA ribB OR37_01047] Multifunctional fusion protein [Includes: GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12)]
[gbuA LMRG_02114] Glycine betaine/carnitine transport ATP-binding protein GbuA (EC 7.6.2.9)
[glmU OR1_01412] Bifunctional protein GlmU [Includes: Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157); UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase)]
[Slc38a2 Ata2 Kiaa1382 Sat2 Snat2] Sodium-coupled neutral amino acid transporter 2 (Amino acid transporter A2) (Solute carrier family 38 member 2) (System A amino acid transporter 2) (System A transporter 1) (System N amino acid transporter 2)
[dim-5 29E8.110 NCU04402] Histone-lysine N-methyltransferase, H3 lysine-9 specific dim-5 (EC 2.1.1.43) (Histone H3-K9 methyltransferase dim-5) (H3-K9-HMTase dim-5) (HKMT)
[pept-1 cptb opt-2 pep-2 K04E7.2] Peptide transporter family 1 (Di-/tri-peptide transporter CPTB) (Oligopeptide transporter 1)
[ribBA OR1_02316] Riboflavin biosynthesis protein RibBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12); GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)]
[SLC22A5 OCTN2] Solute carrier family 22 member 5 (High-affinity sodium-dependent carnitine cotransporter) (Organic cation/carnitine transporter 2)
[Kmt2a All1 Hrx Mll Mll1] Histone-lysine N-methyltransferase 2A (Lysine N-methyltransferase 2A) (EC 2.1.1.43) (ALL-1) (Myeloid/lymphoid or mixed-lineage leukemia) (Myeloid/lymphoid or mixed-lineage leukemia protein 1) (Zinc finger protein HRX) [Cleaved into: MLL cleavage product N320 (N-terminal cleavage product of 320 kDa) (p320); MLL cleavage product C180 (C-terminal cleavage product of 180 kDa) (p180)]
[OR1D2 OLFR1] Olfactory receptor 1D2 (Olfactory receptor 17-4) (OR17-4) (Olfactory receptor OR17-6) (Olfactory receptor-like protein HGMP07E)
[Rhag Rh50] Ammonium transporter Rh type A (Erythrocyte membrane glycoprotein Rh50) (Rhesus blood group family type A glycoprotein) (Rh family type A glycoprotein) (Rh type A glycoprotein) (CD antigen CD241)
[nnr nnrD nnrE OR1_02963] Multifunctional fusion protein [Includes: ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) (ADP-dependent NAD(P)HX dehydratase); NAD(P)H-hydrate epimerase (EC 5.1.99.6) (NAD(P)HX epimerase)]
[TY2B-OR2 YORWTy2-2 POL YOR343W-B O6304] Transposon Ty2-OR2 Gag-Pol polyprotein (TY2A-TY2B) (Transposon Ty2 TYA-TYB polyprotein) [Cleaved into: Capsid protein (CA); Ty2 protease (PR) (EC 3.4.23.-); Integrase (IN); Reverse transcriptase/ribonuclease H (RT) (RT-RH) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4)]
[TY2B-OR1 YORCTy2-1 POL YOR192C-B O4785] Transposon Ty2-OR1 Gag-Pol polyprotein (TY2A-TY2B) (Transposon Ty2 TYA-TYB polyprotein) [Cleaved into: Capsid protein (CA); Ty2 protease (PR) (EC 3.4.23.-); Integrase (IN); Reverse transcriptase/ribonuclease H (RT) (RT-RH) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4)]
[stk-1 bur1 B20D17.070 NCU01435] Serine/threonine-protein kinase bur1 (EC 2.7.11.22) (EC 2.7.11.23) (Serine-threonine kinase 1)
[glmU OR37_01460] Bifunctional protein GlmU [Includes: Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157); UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase)]
[glmU OR221_2794] Bifunctional protein GlmU [Includes: Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157); UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase)]
[scon-2 B13M15.090 NCU08563] Probable E3 ubiquitin ligase complex SCF subunit scon-2 (Sulfur controller 2) (SCON2) (Sulfur metabolite repression control protein 2)
[murE OR1_01796] UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase)
[nnrE nnrD OR37_00116] Multifunctional fusion protein [Includes: ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) (ADP-dependent NAD(P)HX dehydratase); NAD(P)H-hydrate epimerase (EC 5.1.99.6) (NAD(P)HX epimerase)]
[nnrE nnrD OR214_00542] Multifunctional fusion protein [Includes: ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) (ADP-dependent NAD(P)HX dehydratase); NAD(P)H-hydrate epimerase (EC 5.1.99.6) (NAD(P)HX epimerase)]
[Slc14a2 Ut2] Urea transporter 2 (Solute carrier family 14 member 2) (Urea transporter, kidney)

Bibliography :
[16468990] Ammonium permease-based sensing mechanism for rapid ammonium activation of the protein kinase A pathway in yeast.
[12481062] Characterization of Arabidopsis AtAMT2, a high-affinity ammonium transporter of the plasma membrane.