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BHLH domain-containing protein

 F7GD13_MONDO            Unreviewed;       335 AA.
F7GD13;
27-JUL-2011, integrated into UniProtKB/TrEMBL.
27-JUL-2011, sequence version 1.
07-APR-2021, entry version 57.
RecName: Full=BHLH domain-containing protein {ECO:0000259|PROSITE:PS50888};
Name=PTF1A {ECO:0000313|Ensembl:ENSMODP00000011152};
Monodelphis domestica (Gray short-tailed opossum).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
NCBI_TaxID=13616 {ECO:0000313|Ensembl:ENSMODP00000011152, ECO:0000313|Proteomes:UP000002280};
[1] {ECO:0000313|Ensembl:ENSMODP00000011152, ECO:0000313|Proteomes:UP000002280}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=17495919; DOI=10.1038/nature05805;
Mikkelsen T.S., Wakefield M.J., Aken B., Amemiya C.T., Chang J.L., Duke S.,
Garber M., Gentles A.J., Goodstadt L., Heger A., Jurka J., Kamal M.,
Mauceli E., Searle S.M., Sharpe T., Baker M.L., Batzer M.A., Benos P.V.,
Belov K., Clamp M., Cook A., Cuff J., Das R., Davidow L., Deakin J.E.,
Fazzari M.J., Glass J.L., Grabherr M., Greally J.M., Gu W., Hore T.A.,
Huttley G.A., Kleber M., Jirtle R.L., Koina E., Lee J.T., Mahony S.,
Marra M.A., Miller R.D., Nicholls R.D., Oda M., Papenfuss A.T., Parra Z.E.,
Pollock D.D., Ray D.A., Schein J.E., Speed T.P., Thompson K.,
VandeBerg J.L., Wade C.M., Walker J.A., Waters P.D., Webber C.,
Weidman J.R., Xie X., Zody M.C., Baldwin J., Abdouelleil A., Abdulkadir J.,
Abebe A., Abera B., Abreu J., Acer S.C., Aftuck L., Alexander A., An P.,
Anderson E., Anderson S., Arachi H., Azer M., Bachantsang P., Barry A.,
Bayul T., Berlin A., Bessette D., Bloom T., Bloom T., Boguslavskiy L.,
Bonnet C., Boukhgalter B., Bourzgui I., Brown A., Cahill P., Channer S.,
Cheshatsang Y., Chuda L., Citroen M., Collymore A., Cooke P., Costello M.,
D'Aco K., Daza R., De Haan G., DeGray S., DeMaso C., Dhargay N., Dooley K.,
Dooley E., Doricent M., Dorje P., Dorjee K., Dupes A., Elong R., Falk J.,
Farina A., Faro S., Ferguson D., Fisher S., Foley C.D., Franke A.,
Friedrich D., Gadbois L., Gearin G., Gearin C.R., Giannoukos G., Goode T.,
Graham J., Grandbois E., Grewal S., Gyaltsen K., Hafez N., Hagos B.,
Hall J., Henson C., Hollinger A., Honan T., Huard M.D., Hughes L.,
Hurhula B., Husby M.E., Kamat A., Kanga B., Kashin S., Khazanovich D.,
Kisner P., Lance K., Lara M., Lee W., Lennon N., Letendre F., LeVine R.,
Lipovsky A., Liu X., Liu J., Liu S., Lokyitsang T., Lokyitsang Y.,
Lubonja R., Lui A., MacDonald P., Magnisalis V., Maru K., Matthews C.,
McCusker W., McDonough S., Mehta T., Meldrim J., Meneus L., Mihai O.,
Mihalev A., Mihova T., Mittelman R., Mlenga V., Montmayeur A., Mulrain L.,
Navidi A., Naylor J., Negash T., Nguyen T., Nguyen N., Nicol R., Norbu C.,
Norbu N., Novod N., O'Neill B., Osman S., Markiewicz E., Oyono O.L.,
Patti C., Phunkhang P., Pierre F., Priest M., Raghuraman S., Rege F.,
Reyes R., Rise C., Rogov P., Ross K., Ryan E., Settipalli S., Shea T.,
Sherpa N., Shi L., Shih D., Sparrow T., Spaulding J., Stalker J.,
Stange-Thomann N., Stavropoulos S., Stone C., Strader C., Tesfaye S.,
Thomson T., Thoulutsang Y., Thoulutsang D., Topham K., Topping I.,
Tsamla T., Vassiliev H., Vo A., Wangchuk T., Wangdi T., Weiand M.,
Wilkinson J., Wilson A., Yadav S., Young G., Yu Q., Zembek L., Zhong D.,
Zimmer A., Zwirko Z., Jaffe D.B., Alvarez P., Brockman W., Butler J.,
Chin C., Gnerre S., MacCallum I., Graves J.A., Ponting C.P., Breen M.,
Samollow P.B., Lander E.S., Lindblad-Toh K.;
"Genome of the marsupial Monodelphis domestica reveals innovation in non-
coding sequences.";
Nature 447:167-177(2007).
[2] {ECO:0000313|Ensembl:ENSMODP00000011152}
IDENTIFICATION.
Ensembl;
Submitted (JUL-2011) to UniProtKB.
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RefSeq; XP_001367710.1; XM_001367673.2.
STRING; 13616.ENSMODP00000011152; -.
Ensembl; ENSMODT00000011369; ENSMODP00000011152; ENSMODG00000008946.
GeneID; 100019635; -.
KEGG; mdo:100019635; -.
CTD; 256297; -.
eggNOG; KOG4029; Eukaryota.
GeneTree; ENSGT00940000161000; -.
HOGENOM; CLU_053709_0_0_1; -.
InParanoid; F7GD13; -.
OMA; YCCEAGA; -.
OrthoDB; 1269550at2759; -.
TreeFam; TF315153; -.
Proteomes; UP000002280; Chromosome 8.
Bgee; ENSMODG00000008946; Expressed in endometrium and 5 other tissues.
GO; GO:0005667; C:transcription regulator complex; IEA:Ensembl.
GO; GO:0003682; F:chromatin binding; IEA:Ensembl.
GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IEA:Ensembl.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
GO; GO:0070888; F:E-box binding; IEA:Ensembl.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0000977; F:RNA polymerase II transcription regulatory region sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0035881; P:amacrine cell differentiation; IEA:Ensembl.
GO; GO:0021549; P:cerebellum development; IEA:Ensembl.
GO; GO:0032502; P:developmental process; IBA:GO_Central.
GO; GO:0048663; P:neuron fate commitment; IEA:Ensembl.
GO; GO:0031016; P:pancreas development; IEA:Ensembl.
GO; GO:0061074; P:regulation of neural retina development; IEA:Ensembl.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0010842; P:retina layer formation; IEA:Ensembl.
GO; GO:0048384; P:retinoic acid receptor signaling pathway; IEA:Ensembl.
GO; GO:0009888; P:tissue development; IEA:Ensembl.
Gene3D; 4.10.280.10; -; 1.
InterPro; IPR011598; bHLH_dom.
InterPro; IPR036638; HLH_DNA-bd_sf.
Pfam; PF00010; HLH; 1.
SMART; SM00353; HLH; 1.
SUPFAM; SSF47459; SSF47459; 1.
PROSITE; PS50888; BHLH; 1.
4: Predicted;
Reference proteome {ECO:0000313|Proteomes:UP000002280}.
DOMAIN 170..222
/note="BHLH"
/evidence="ECO:0000259|PROSITE:PS50888"
REGION 16..41
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
REGION 74..115
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
REGION 308..335
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
COMPBIAS 314..328
/note="Polar"
/evidence="ECO:0000256|SAM:MobiDB-lite"
SEQUENCE 335 AA; 36055 MW; 1B1FFCC760CD215D CRC64;
MDSVLLEHFP GGLDAFPSPY FDEEDFFTDQ SSRDPLEDGD ELLPDEQAEV DFLSHQLHEY
YYRDGARLLL PPVQSALHPP AAPPGVSEEE NDGSGFCSET RAPPGGGGGF PDSPGSVSPE
LCLAYPCSGN ASVLSPGGRL RGLSSAAAAA AAAAAARRRR RVRSEAELQQ LRQAANVRER
RRMQSINDAF EGLRSHIPTL PYEKRLSKVD TLRLAIGYIN FLSELVQSDL PLRGGGGGGC
VRAGAGGVLG GDGLGSQAKK VIICHRGTRS PSPSDPDYGL PPLAGHSLSW TDEKQLKEQN
IIRTAKVWTP EDPRKLNNKS SLNNIENEPP FDFVS


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27-590 NEUROD6 contains 1 basic helix-loop-helix (bHLH) domain. It activates E box-dependent transcription in collaboration with TCF3_E47 and may be a trans-acting factor involved in the development and main 0.05 mg
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Pathways :
WP1689: Porphyrin and chlorophyll metabolism
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WP1713: Two-component system
WP163: Cytoplasmic Ribosomal Proteins
WP1438: Influenza A virus infection
WP1892: Protein folding
WP1789: Binding of RNA by Insulin-like Growth Factor-2 mRNA Binding Proteins (IGF2BPs/IMPs/VICKZs)
WP1665: Limonene and pinene degradation
WP525: Mitochondrial Unfolded-Protein Response
WP914: NLR proteins
WP1675: Nitrogen metabolism
WP813: G Protein Signaling Pathways
WP1531: Vitamin D synthesis
WP2032: TSH signaling pathway
WP1887: Post-translational modification: synthesis of GPI-anchored proteins
WP1616: ABC transporters
WP2199: Seed Development
WP1963: The effect of Glucocorticoids on target gene expression
WP1685: Peptidoglycan biosynthesis
WP1032: NLR proteins
WP1692: Protein export
WP1239: Cytoplasmic Ribosomal Proteins

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[BHLH148 AIF2 EN143 RITF1 At3g06590 F5E6.8] Transcription factor bHLH148 (ATBS1 interacting factor 2) (Basic helix-loop-helix protein 148) (AtbHLH148) (bHLH 148) (Protein RSA1 INTERACTING TRANSCRIPTION FACTOR 1) (AtRITF1) (Transcription factor EN 143) (bHLH transcription factor bHLH148)
[BHLH95 EN21 RGE1 ZOU At1g49770 F14J22.2] Transcription factor bHLH95 (Basic helix-loop-helix protein 95) (AtbHLH95) (bHLH 95) (Protein RETARDED GROWTH OF EMBRYO 1) (Protein ZHOUPI) (Transcription factor EN 21) (bHLH transcription factor bHLH095)
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[LRL1 BHLH66 DROP1 EN95 At2g24260 F27D4.17] Transcription factor LRL1 (Basic helix-loop-helix protein 66) (AtbHLH66) (bHLH 66) (Protein DEFECTIVE REGION OF POLLEN 1) (Protein LJRHL1- LIKE 1) (AtLRL1) (Transcription factor EN 95) (Transcription factor bHLH66) (bHLH transcription factor bHLH066)
[HFR1 BHLH26 EN68 FBI1 REP1 RSF1 At1g02340 T6A9.4 T6A9_13] Transcription factor HFR1 (Basic helix-loop-helix protein 26) (AtbHLH26) (bHLH 26) (Protein LONG HYPOCOTYL IN FAR-RED 1) (Protein REDUCED PHYTOCHROME SIGNALING) (Reduced sensitivity to far-red light) (Transcription factor EN 68) (bHLH transcription factor bHLH026)
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[LHW BHLH156 At2g27230 F12K2] Transcription factor LHW (BHLH transcription factor delta) (bHLH delta) (Basic helix-loop-helix protein 156) (AtbHLH156) (bHLH 156) (Protein LONESOME HIGHWAY) (bHLH transcription factor bHLH156)
[BHLH13 EN39 At1g01260 F6F3.7] Transcription factor bHLH13 (Basic helix-loop-helix protein 13) (AtbHLH13) (bHLH 13) (Transcription factor EN 39) (bHLH transcription factor bHLH013)
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[PIF1 BHLH15 EN101 PIL5 At2g20180 T2G17.2] Transcription factor PIF1 (Basic helix-loop-helix protein 15) (AtbHLH15) (bHLH 15) (Protein PHY-INTERACTING FACTOR 1) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) (Transcription factor EN 101) (bHLH transcription factor bHLH015)
[ARNTL BHLHE5 BMAL1 MOP3 PASD3] Aryl hydrocarbon receptor nuclear translocator-like protein 1 (Basic-helix-loop-helix-PAS protein MOP3) (Brain and muscle ARNT-like 1) (Class E basic helix-loop-helix protein 5) (bHLHe5) (Member of PAS protein 3) (PAS domain-containing protein 3) (bHLH-PAS protein JAP3)
[SPCH BHLH98 EN19 At5g53210 MFH8.15] Transcription factor SPEECHLESS (Basic helix-loop-helix protein 98) (AtbHLH98) (bHLH 98) (Transcription factor EN 19) (bHLH transcription factor bHLH098)
[TT8 BHLH42 EN32 At4g09820 F17A8.170] Transcription factor TT8 (Basic helix-loop-helix protein 42) (AtbHLH42) (bHLH 42) (Protein TRANSPARENT TESTA 8) (Transcription factor EN 32) (bHLH transcription factor bHLH042)
[FAMA BHLH97 EN14 FMA At3g24140 MUJ8.4] Transcription factor FAMA (Basic helix-loop-helix protein 97) (AtbHLH97) (bHLH 97) (Transcription factor EN 14) (bHLH transcription factor bHLH097)
[BEE2 BHLH58 EN80 At4g36540 AP22.3] Transcription factor BEE 2 (Basic helix-loop-helix protein 58) (AtbHLH58) (bHLH 58) (Protein Brassinosteroid enhanced expression 2) (Transcription factor EN 80) (bHLH transcription factor bHLH058)
[FIT BHLH29 EN43 FIT1 FRU At2g28160 F24D13.5] Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (Basic helix-loop-helix protein 29) (AtbHLH29) (bHLH 29) (FER-LIKE REGULATOR OF IRON UPTAKE) (Transcription factor EN 43) (Transcription factor Fe-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1) (bHLH transcription factor bHLH029)
[HEC3 BHLH43 EN119 At5g09750 F17I14.60] Transcription factor HEC3 (Basic helix-loop-helix protein 43) (AtbHLH43) (bHLH 43) (Protein HECATE 3) (Transcription factor EN 119) (bHLH transcription factor bHLH043)
[RSL4 BHLH54 EN114 At1g27740 T22C5.19] Transcription factor RSL3 (Basic helix-loop-helix protein 54) (AtbHLH54) (bHLH 54) (ROOT HAIR DEFECTIVE 6-LIKE 4) (Protein RHD SIX-LIKE 4) (Transcription factor EN 114) (Transcription factor bHLH54) (bHLH transcription factor bHLH054)
[MYC4 BHLH4 EN37 At4g17880 T6K21.60] Transcription factor MYC4 (AtMYC4) (Basic helix-loop-helix protein 4) (AtbHLH4) (bHLH 4) (Transcription factor EN 37) (bHLH transcription factor bHLH004)
[PIF4 BHLH9 EN102 SRL2 At2g43010 MFL8.13] Transcription factor PIF4 (Basic helix-loop-helix protein 9) (AtbHLH9) (bHLH 9) (Phytochrome-interacting factor 4) (Short under red-light 2) (Transcription factor EN 102) (bHLH transcription factor bHLH009)
[LRL2 BHLH69 DROP2 EN94 At4g30980 F6I18.110] Transcription factor LRL2 (Basic helix-loop-helix protein 69) (AtbHLH69) (bHLH 69) (Protein DEFECTIVE REGION OF POLLEN 2) (Protein LJRHL1- LIKE 2) (AtLRL2) (Transcription factor EN 94) (Transcription factor bHLH69) (bHLH transcription factor bHLH069)
[PIF5 BHLH65 EN103 PIL6 At3g59060 F17J16.110] Transcription factor PIF5 (Basic helix-loop-helix protein 65) (AtbHLH65) (bHLH 65) (Phytochrome interacting factor-like 6) (Phytochrome-interacting factor 5) (Transcription factor EN 103) (bHLH transcription factor bHLH065)
[BHLH6 BHLH006 RERJ1 Os04g0301500 LOC_Os04g23550 OSJNBb0018A10.7] Transcription factor BHLH6 (Basic helix-loop-helix protein 6) (OsbHLH6) (osbHLH006) (bHLH transcription factor 6)
[PIF3 BHLH8 EN100 PAP3 At1g09530 F14J9.19] Transcription factor PIF3 (Basic helix-loop-helix protein 8) (AtbHLH8) (bHLH 8) (Phytochrome-associated protein 3) (Phytochrome-interacting factor 3) (Transcription factor EN 100) (bHLH transcription factor bHLH008)
[SCRM BHLH116 EN45 ICE1 At3g26744 MDJ14.1 MLJ15.14] Transcription factor ICE1 (Basic helix-loop-helix protein 116) (AtbHLH116) (bHLH 116) (Inducer of CBF expression 1) (Transcription factor EN 45) (Transcription factor SCREAM) (bHLH transcription factor bHLH116)
[BHLH72 EN109 PIF7 At5g61270 MFB13.4] Transcription factor PIF7 (Basic helix-loop-helix protein 72) (AtbHLH72) (bHLH 72) (Phytochrome-interacting factor 7) (Transcription factor EN 109) (bHLH transcription factor bHLH072)
[BIM1 BHLH46 EN126 At5g08130 T22D6.70] Transcription factor BIM1 (BES1-interacting Myc-like protein 1) (Basic helix-loop-helix protein 46) (AtbHLH46) (bHLH 46) (Transcription factor EN 126) (bHLH transcription factor bHLH046)

Bibliography :
[33759814] Functional genomics study of protein inhibitor of activated STAT1 in mouse hippocampal neuronal cells revealed by RNA sequencing.
[33643814] Phosphorylation regulates cullin-based ubiquitination in tumorigenesis.
[33500544] Genomic analysis of WD40 protein family in the mango reveals a TTG1 protein enhances root growth and abiotic tolerance in Arabidopsis.
[33296551] Comparative transcriptome profile analysis of rice varieties with different tolerance to zinc deficiency.
[32445267] Arabidopsis JMJ29 is involved in trichome development by regulating the core trichome initiation gene GLABRA3.
[32352975] Quantitative live imaging of Venus::BMAL1 in a mouse model reveals complex dynamics of the master circadian clock regulator.
[31897123] Prognostic genes of triple-negative breast cancer identified by weighted gene co-expression network analysis.
[31817496] Insights into Barley Root Transcriptome under Mild Drought Stress with an Emphasis on Gene Expression Regulatory Mechanisms.
[31234698] Autophagic death of neural stem cells mediates chronic stress-induced decline of adult hippocampal neurogenesis and cognitive deficits.
[31189709] The Kaposi's Sarcoma-Associated Herpesvirus ORF34 Protein Interacts and Stabilizes HIF-2α via Binding to the HIF-2α bHLH and PAS Domains.