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Baseplate tail-tube junction protein gp48 (Baseplate-tube cap) (Gene product 48) (gp48)

 BP48_BPT4               Reviewed;         364 AA.
P13339;
01-JAN-1990, integrated into UniProtKB/Swiss-Prot.
23-JAN-2007, sequence version 3.
16-JAN-2019, entry version 77.
RecName: Full=Baseplate tail-tube junction protein gp48 {ECO:0000305};
AltName: Full=Baseplate-tube cap {ECO:0000305};
AltName: Full=Gene product 48;
Short=gp48;
Name=48;
Enterobacteria phage T4 (Bacteriophage T4).
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae;
Tevenvirinae; T4virus.
NCBI_TaxID=10665;
NCBI_TaxID=562; Escherichia coli.
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 2-13, AND
FUNCTION.
PubMed=3363870; DOI=10.1016/0042-6822(88)90622-8;
Ishimoto L.K., Ishimoto K.S., Cascino A., Cipollaro M.,
Eiserling F.A.;
"The structure of three bacteriophage T4 genes required for tail-tube
assembly.";
Virology 164:81-90(1988).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=12626685; DOI=10.1128/MMBR.67.1.86-156.2003;
Miller E.S., Kutter E., Mosig G., Arisaka F., Kunisawa T., Ruger W.;
"Bacteriophage T4 genome.";
Microbiol. Mol. Biol. Rev. 67:86-156(2003).
[3]
SUBCELLULAR LOCATION, AND SUBUNIT.
PubMed=2403438;
Watts N.R., Coombs D.H.;
"Structure of the bacteriophage T4 baseplate as determined by chemical
cross-linking.";
J. Virol. 64:143-154(1990).
[4]
REVIEW.
PubMed=14625682; DOI=10.1007/s00018-003-3072-1;
Leiman P.G., Kanamaru S., Mesyanzhinov V.V., Arisaka F.,
Rossmann M.G.;
"Structure and morphogenesis of bacteriophage T4.";
Cell. Mol. Life Sci. 60:2356-2370(2003).
[5]
REVIEW ON FUNCTION.
PubMed=21129200; DOI=10.1186/1743-422X-7-355;
Leiman P.G., Arisaka F., van Raaij M.J., Kostyuchenko V.A.,
Aksyuk A.A., Kanamaru S., Rossmann M.G.;
"Morphogenesis of the T4 tail and tail fibers.";
Virol. J. 7:355-355(2010).
[6]
SUBUNIT.
PubMed=19896486; DOI=10.1016/j.jmb.2009.10.071;
Yap M.L., Mio K., Leiman P.G., Kanamaru S., Arisaka F.;
"The baseplate wedges of bacteriophage T4 spontaneously assemble into
hubless baseplate-like structure in vitro.";
J. Mol. Biol. 395:349-360(2010).
[7]
STRUCTURE BY ELECTRON MICROSCOPY (4.11 ANGSTROMS), SUBUNIT,
SUBCELLULAR LOCATION, AND FUNCTION.
PubMed=27193680; DOI=10.1038/nature17971;
Taylor N.M., Prokhorov N.S., Guerrero-Ferreira R.C., Shneider M.M.,
Browning C., Goldie K.N., Stahlberg H., Leiman P.G.;
"Structure of the T4 baseplate and its function in triggering sheath
contraction.";
Nature 533:346-352(2016).
-!- FUNCTION: Baseplate protein that forms, together with gp54, the
baseplate-tail tube junction. The tail tube first 2 annuli are
formed by gp48 and gp54, which are in continuation of the spike
complex. Involved in the tail assembly. Morphogenesis of the
baseplate is completed by association of gp48 and gp54, which bind
the upper part of the baseplate dome to form the platform for
polymerization of the tail tube. {ECO:0000269|PubMed:27193680,
ECO:0000269|PubMed:3363870, ECO:0000303|PubMed:21129200}.
-!- SUBUNIT: Homohexamer (PubMed:27193680). The tube first annulus is
composed of a gp48 hexameric ring. Interacts with gp54. Part of
the baseplate macromolecular complex which consists of gp5, gp5.4,
gp27 (central spike complex); gp6, gp25, gp53 (inner baseplate);
gp7, gp8 (intermediate baseplate); gp9, gp10, gp11, gp12
(peripheral); gp48 and gp54 (proximal region of the tail tube).
{ECO:0000269|PubMed:19896486, ECO:0000269|PubMed:2403438,
ECO:0000269|PubMed:27193680}.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000269|PubMed:2403438,
ECO:0000269|PubMed:27193680}. Note=Present in 6 copies in the
baseplate. {ECO:0000303|PubMed:21129200}.
-!- INDUCTION: Expressed in the late phase of the viral replicative
cycle. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; M20298; AAA32539.1; -; Genomic_DNA.
EMBL; AF158101; AAD42476.1; -; Genomic_DNA.
PIR; JF0036; GCBPT4.
RefSeq; NP_049806.1; NC_000866.4.
PDB; 5IV5; EM; 4.11 A; BE/DH/GA/ID/U/r=1-364.
PDBsum; 5IV5; -.
SMR; P13339; -.
TCDB; 1.K.1.1.1; the gp27/5 t4-baseplate (t4-bp) family.
GeneID; 1258551; -.
KEGG; vg:1258551; -.
Proteomes; UP000009087; Genome.
GO; GO:0019012; C:virion; IDA:CACAO.
GO; GO:0098025; C:virus tail, baseplate; IDA:UniProtKB.
GO; GO:0098003; P:viral tail assembly; IEA:UniProtKB-KW.
InterPro; IPR024389; Gp48_T4-like.
Pfam; PF11091; T4_tail_cap; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Direct protein sequencing;
Late protein; Reference proteome; Viral baseplate protein;
Viral release from host cell; Viral tail assembly; Viral tail protein;
Virion.
INIT_MET 1 1 Removed; by host.
{ECO:0000269|PubMed:3363870}.
CHAIN 2 364 Baseplate tail-tube junction protein
gp48.
/FTId=PRO_0000165039.
SEQUENCE 364 AA; 39734 MW; DB0E27909BB7C726 CRC64;
MAIVKEITAD LIKKSGEKIS AGQSTKSEVG TKTYTAQFPT GRASGNDTTE DFQVTDLYKN
GLLFTAYNMS SRDSGSLRSM RSNYSSSSSS ILRTARNTIS STVSKLSNGL ISNNNSGTIS
KSPIANILLP RSKSDVDTSS HRFNDVQESL ISRGGGTATG VLSNIASTAV FGALESITQG
IMADNNEQIY TTARSMYGGA ENRTKVFTWD LTPRSTEDLM AIINIYQYFN YFSYGETGKS
QYAAEIKGYL DDWYRSTLIE PLSPEDAAKN KTLFEKMTSS LTNVLVVSNP TVWMVKNFGA
TSKFDGKTEI FGPCQIQSIR FDKTPNGNFN GLAIAPNLPS TFTLEITMRE IITLNRASLY
AGTF


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Pathways :
WP1224: EBV LMP1 signaling
WP2272: Pathogenic Escherichia coli infection
WP1012: IL-7 Signaling Pathway
WP1025: B Cell Receptor Signaling Pathway
WP1031: IL-3 Signaling Pathway
WP1049: G Protein Signaling Pathways
WP1052: Id Signaling Pathway
WP1055: IL-4 signaling Pathway
WP1131: IL-7 Signaling Pathway
WP1144: B Cell Receptor Signaling Pathway
WP1150: IL-3 Signaling Pathway
WP1165: G Protein Signaling Pathways
WP1168: Id Signaling Pathway
WP1171: IL-4 signaling Pathway
WP118: IL-7 Signaling Pathway
WP1263: Mitochondrial Gene Expression
WP1301: Mitochondrial Gene Expression
WP1346: IL-7 Signaling Pathway
WP1359: IL-3 Signaling Pathway
WP1368: Mitochondrial Gene Expression
WP1371: G Protein Signaling Pathways
WP1374: Id Signaling Pathway
WP1376: IL-4 signaling Pathway
WP1438: Influenza A virus infection
WP1449: Regulation of toll-like receptor signaling pathway

Related Genes :
[env] Envelope glycoprotein gp130 (Env polyprotein) [Cleaved into: Leader peptide (LP) (Env leader protein) (Elp) (gp18LP); Surface protein (SU) (Glycoprotein 80) (gp80); Transmembrane protein (TM) (Glycoprotein 48) (gp48)]
[env] Envelope glycoprotein gp130 (Env polyprotein) [Cleaved into: Leader peptide (LP) (Env leader protein) (Elp) (gp18LP); Surface protein (SU) (Glycoprotein 80) (gp80); Transmembrane protein (TM) (Glycoprotein 48) (gp48)]
[env] Envelope glycoprotein gp130 (Env polyprotein) [Cleaved into: Leader peptide (LP) (Env leader protein) (Elp) (gp18LP); Surface protein (SU) (Glycoprotein 80) (gp80); Transmembrane protein (TM) (Glycoprotein 48) (gp48)]
[env] Envelope glycoprotein gp130 (Env polyprotein) [Cleaved into: Leader peptide (LP) (Env leader protein) (Elp) (gp18LP); Surface protein (SU) (Glycoprotein 80) (gp80); Transmembrane protein (TM) (Glycoprotein 48) (gp48)]
[env] Envelope glycoprotein gp130 (Env polyprotein) [Cleaved into: Leader peptide (LP) (Env leader protein) (Elp) (gp18LP); Surface protein (SU) (Glycoprotein 80) (gp80); Transmembrane protein (TM) (Glycoprotein 48) (gp48)]
[vpr] Protein Vpr (R ORF protein) (Viral protein R)
[vpr] Protein Vpr (R ORF protein) (Viral protein R)
[vif] Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
[vif] Virion infectivity factor (Vif) (SOR protein) [Cleaved into: p17; p7]
[ul12 UL12 GaHV1LT_gp48 GaHV1LV_gp48 ILTV_ORF50 ILTV_ORF51 ILTVA20_ORF50 ILTVLJS09_ORF50 ILTVSA2_ORF50 ILTVWG_ORF50] Alkaline nuclease (EC 3.1.-.-)
[Shh Hhg1] Sonic hedgehog protein (SHH) (HHG-1) (Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains) (ShhNC) [Cleaved into: Sonic hedgehog protein N-product (ShhN) (Shh N-terminal processed signaling domains) (ShhNp) (Sonic hedgehog protein 19 kDa product)]
[shha shh vhh1] Sonic hedgehog protein A (SHHA) (Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains) (ShhNC) (VHH-1) [Cleaved into: Sonic hedgehog protein A N-product (Shh N-terminal processed signaling domains) (ShhNp) (Sonic hedgehog protein N-product) (ShhN)]
[KMT2A ALL1 CXXC7 HRX HTRX MLL MLL1 TRX1] Histone-lysine N-methyltransferase 2A (Lysine N-methyltransferase 2A) (EC 2.1.1.43) (ALL-1) (CXXC-type zinc finger protein 7) (Myeloid/lymphoid or mixed-lineage leukemia) (Myeloid/lymphoid or mixed-lineage leukemia protein 1) (Trithorax-like protein) (Zinc finger protein HRX) [Cleaved into: MLL cleavage product N320 (N-terminal cleavage product of 320 kDa) (p320); MLL cleavage product C180 (C-terminal cleavage product of 180 kDa) (p180)]
[Vangl2 Lpp1 Ltap] Vang-like protein 2 (Loop-tail protein 1) (Loop-tail-associated protein) (Van Gogh-like protein 2)
[U lambdap12] Tail tube terminator protein (TrP) (Gene product U) (gpU) (Minor tail protein U) (Tail sheath-stabilizing protein) (Tail-to-head joining protein) (THJP)
[Kmt2a All1 Hrx Mll Mll1] Histone-lysine N-methyltransferase 2A (Lysine N-methyltransferase 2A) (EC 2.1.1.43) (ALL-1) (Myeloid/lymphoid or mixed-lineage leukemia) (Myeloid/lymphoid or mixed-lineage leukemia protein 1) (Zinc finger protein HRX) [Cleaved into: MLL cleavage product N320 (N-terminal cleavage product of 320 kDa) (p320); MLL cleavage product C180 (C-terminal cleavage product of 180 kDa) (p180)]
[SHH] Sonic hedgehog protein (SHH) (HHG-1) (Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains) (ShhNC) [Cleaved into: Sonic hedgehog protein N-product (ShhN) (Shh N-terminal processed signaling domains) (ShhNp)]
[VANGL2 KIAA1215 STB1] Vang-like protein 2 (Loop-tail protein 1 homolog) (Strabismus 1) (Van Gogh-like protein 2)
[Shh Vhh-1] Sonic hedgehog protein (SHH) (Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains) (ShhNC) [Cleaved into: Sonic hedgehog protein N-product (ShhN) (Shh N-terminal processed signaling domains) (ShhNp)]
[UBA52 UBCEP2] Ubiquitin-60S ribosomal protein L40 (CEP52) (Ubiquitin A-52 residue ribosomal protein fusion product 1) [Cleaved into: Ubiquitin; 60S ribosomal protein L40 (Large ribosomal subunit protein eL40)]
[shh] Sonic hedgehog protein (Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains) (ShhNC) (VHH-1) (X-SHH) [Cleaved into: Sonic hedgehog protein N-product (ShhN) (Shh N-terminal processed signaling domains) (ShhNp)]
[DACT1 DPR1 HNG3] Dapper homolog 1 (hDPR1) (Dapper antagonist of catenin 1) (Hepatocellular carcinoma novel gene 3 protein)
[SHH] Sonic hedgehog protein (SHH) (Shh unprocessed N-terminal signaling and C-terminal autoprocessing domains) (ShhNC) [Cleaved into: Sonic hedgehog protein N-product (ShhN) (Shh N-terminal processed signaling domains) (ShhNp)]
[A Mup03] DDE-recombinase A (EC 3.1.22.-) (EC 6.5.1.-) (DDE-transposase A) (Gene product 03) (gp03) (Gene product A) (gpA) (MuA)
[shhb twhh] Tiggy-winkle hedgehog protein (TWHH) (Sonic hedgehog protein B) (SHHB) [Cleaved into: Tiggy-winkle hedgehog protein N-product; Tiggy-winkle hedgehog protein C-product]
[crp cap csm b3357 JW5702] cAMP-activated global transcriptional regulator CRP (Catabolite activator protein) (CAP) (Catabolite gene activator) (cAMP receptor protein) (CRP) (cAMP regulatory protein)
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[PRKACA PKACA] cAMP-dependent protein kinase catalytic subunit alpha (PKA C-alpha) (EC 2.7.11.11)
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]

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