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CAP-Gly domain-containing linker protein 2 (Cytoplasmic linker protein 115) (CLIP-115) (Cytoplasmic linker protein 2)

 CLIP2_RAT               Reviewed;        1046 AA.
O55156;
27-SEP-2005, integrated into UniProtKB/Swiss-Prot.
01-JUN-1998, sequence version 1.
16-JAN-2019, entry version 118.
RecName: Full=CAP-Gly domain-containing linker protein 2;
AltName: Full=Cytoplasmic linker protein 115;
Short=CLIP-115;
AltName: Full=Cytoplasmic linker protein 2;
Name=Clip2; Synonyms=Cyln2;
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
NCBI_TaxID=10116;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, AND TISSUE
SPECIFICITY.
PubMed=9427243; DOI=10.1016/S0896-6273(00)80411-0;
de Zeeuw C.I., Hoogenraad C.C., Goedknegt E., Hertzberg E.,
Neubauer A., Grosveld F.G., Galjart N.J.;
"CLIP-115, a novel brain specific cytoplasmic linker protein, mediates
the localisation of dendritic lamellar bodies.";
Neuron 19:1187-1199(1997).
[2]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-203; SER-208 AND
SER-923, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE
ANALYSIS].
PubMed=22673903; DOI=10.1038/ncomms1871;
Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A.,
Lundby C., Olsen J.V.;
"Quantitative maps of protein phosphorylation sites across 14
different rat organs and tissues.";
Nat. Commun. 3:876-876(2012).
-!- FUNCTION: Seems to link microtubules to dendritic lamellar body
(DLB), a membranous organelle predominantly present in bulbous
dendritic appendages of neurons linked by dendrodendritic gap
junctions. May operate in the control of brain-specific organelle
translocations. {ECO:0000269|PubMed:9427243}.
-!- SUBUNIT: Interacts with CLASP1 and CLASP2. Binds preferentially to
tyrosinated microtubules, and only marginally to detyrosinated
microtubules. {ECO:0000250|UniProtKB:Q9Z0H8}.
-!- INTERACTION:
Q7Z460:CLASP1 (xeno); NbExp=3; IntAct=EBI-349416, EBI-913476;
Q80TV8:Clasp1 (xeno); NbExp=3; IntAct=EBI-349416, EBI-908322;
O75122:CLASP2 (xeno); NbExp=3; IntAct=EBI-349416, EBI-913524;
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:9427243}.
Cytoplasm, cytoskeleton {ECO:0000269|PubMed:9427243}.
Note=Localizes preferentially to the ends of tyrosinated
microtubules. {ECO:0000250|UniProtKB:Q9Z0H8}.
-!- TISSUE SPECIFICITY: Brain-specific, expressed in the hippocampus,
inferior olive, and piriform cortex and in the cerebellum (at
protein level). {ECO:0000269|PubMed:9427243}.
-----------------------------------------------------------------------
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EMBL; AJ000485; CAA04123.1; -; mRNA.
PIR; T42734; T42734.
UniGene; Rn.10893; -.
ProteinModelPortal; O55156; -.
SMR; O55156; -.
BioGrid; 247936; 2.
IntAct; O55156; 4.
STRING; 10116.ENSRNOP00000035734; -.
iPTMnet; O55156; -.
PhosphoSitePlus; O55156; -.
jPOST; O55156; -.
PaxDb; O55156; -.
PRIDE; O55156; -.
UCSC; RGD:62019; rat.
RGD; 62019; Clip2.
eggNOG; KOG4568; Eukaryota.
eggNOG; COG5244; LUCA.
HOGENOM; HOG000092755; -.
HOVERGEN; HBG007123; -.
InParanoid; O55156; -.
PhylomeDB; O55156; -.
PRO; PR:O55156; -.
Proteomes; UP000002494; Unplaced.
GO; GO:0005881; C:cytoplasmic microtubule; IDA:UniProtKB.
GO; GO:0030425; C:dendrite; TAS:UniProtKB.
GO; GO:1901588; C:dendritic microtubule; IDA:RGD.
GO; GO:0042599; C:lamellar body; IDA:RGD.
GO; GO:0035371; C:microtubule plus-end; ISS:UniProtKB.
GO; GO:0008017; F:microtubule binding; TAS:RGD.
GO; GO:0051010; F:microtubule plus-end binding; IDA:UniProtKB.
GO; GO:0007026; P:negative regulation of microtubule depolymerization; NAS:UniProtKB.
Gene3D; 2.30.30.190; -; 2.
InterPro; IPR036859; CAP-Gly_dom_sf.
InterPro; IPR000938; CAP-Gly_domain.
InterPro; IPR028394; CLIP2.
PANTHER; PTHR18916:SF10; PTHR18916:SF10; 1.
Pfam; PF01302; CAP_GLY; 2.
SMART; SM01052; CAP_GLY; 2.
SUPFAM; SSF74924; SSF74924; 2.
PROSITE; PS00845; CAP_GLY_1; 2.
PROSITE; PS50245; CAP_GLY_2; 2.
1: Evidence at protein level;
Coiled coil; Complete proteome; Cytoplasm; Cytoskeleton; Microtubule;
Phosphoprotein; Reference proteome; Repeat.
CHAIN 1 1046 CAP-Gly domain-containing linker protein
2.
/FTId=PRO_0000083517.
DOMAIN 100 142 CAP-Gly 1. {ECO:0000255|PROSITE-
ProRule:PRU00045}.
DOMAIN 240 282 CAP-Gly 2. {ECO:0000255|PROSITE-
ProRule:PRU00045}.
COILED 355 525 {ECO:0000255}.
COILED 564 637 {ECO:0000255}.
COILED 675 966 {ECO:0000255}.
COILED 994 1014 {ECO:0000255}.
COMPBIAS 315 346 Ser-rich.
MOD_RES 50 50 Phosphoserine.
{ECO:0000250|UniProtKB:Q9Z0H8}.
MOD_RES 203 203 Phosphoserine.
{ECO:0000244|PubMed:22673903}.
MOD_RES 208 208 Phosphoserine.
{ECO:0000244|PubMed:22673903}.
MOD_RES 212 212 Phosphoserine.
{ECO:0000250|UniProtKB:Q9Z0H8}.
MOD_RES 315 315 Phosphoserine.
{ECO:0000250|UniProtKB:Q9Z0H8}.
MOD_RES 923 923 Phosphoserine.
{ECO:0000244|PubMed:22673903}.
MOD_RES 973 973 Phosphoserine.
{ECO:0000250|UniProtKB:Q9Z0H8}.
MOD_RES 979 979 Phosphoserine.
{ECO:0000250|UniProtKB:Q9Z0H8}.
SEQUENCE 1046 AA; 115480 MW; 72E6CE9F76D2A1D0 CRC64;
MQKPSGLKPP GRGGKHSSPV GRPSIGSASS SVVASASGSK EGSPLHKQAS GPSSAGATTT
VSEKPGPKAA EVGDDFLGDF VVGERVWVNG VKPGVVQYLG ETQFAPGQWA GVVLDDPVGK
NDGAVGGLRY FECPALQGIF TRPSKLTRQP AAEGSGSDGH SVESLTAQNL SLHSGTATPP
LTGRVIPLRE SVLNSSVKTG NESGSNLSDS GSVKRGDKDL HLGDRVLVGG TKTGVVRYVG
ETDFAKGEWC GVELDEPLGK NDGAVAGTRY FQCPPKFGLF APIHKVIRIG FPSTSPAKAK
KTKRMAMGVS ALTHSPSSSS ISSVSSVASS VGGRPSRSGL LTETSSRYAR KISGTTALQE
ALKEKQQHIE QLLAERDLER AEVAKATSHI CEVEKEIALL KAQHEQYVAE AEEKLQRARL
LVENVRKEKV DLSNQLEEER RKVEDLQFRV EEESITKGDL ETQTQLEHAR IGELEQSLLL
EKAQAERLLR ELADNRLTTV AEKSRVLQLE EELSLRRGEI EELQHCLLQS GPPPADHPEA
AETLRLRERL LSASKEHQRD STLLQDKYEH MLKTYQTEVD KLRAANEKYA QEVADLKAKV
QQATTENMGL MDNWKSKLDS LASDHQKSLE DLKATLNSGP GAQQKEIGEL KALVEGIKME
HQLELGNLQA KHDLETAMHG KEKEGLRQKL QEAQEELAGL QQHWRAQLEE QAAAPAELQE
AQDQCRDAQL RVQELEGLDV EYRGQAQAIE FLKEQISLAE KKMLDYEMLQ RAEAQSRQEA
ERLREKLLVA ENRLQAVESL CSAQHSHVIE SNDLSEEKIR MKETVEGLQD KLNKRDKEVA
ALTSQMDMLR AQVSALENKC KSGEKKIDSL LKEKRRLEAE LEAVSRKTHD ASGQLVHISQ
ELLRKERSLN ELRVLLLEAN RHSPGPERDL SREVHKAEWR IKEQKLKDDI RGLREKLTGL
DKEKSLSEQK RYSLIDPASA PELLRLQHQL VSTEGCLRDA LDQAQQVERL VEALRGCSDR
TQTISNSGSA NGIHQPDKAH KQEDKH


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Pathways :
WP210: Cytoplasmic Ribosomal Proteins
WP1689: Porphyrin and chlorophyll metabolism
WP1049: G Protein Signaling Pathways
WP1165: G Protein Signaling Pathways
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1493: Carbon assimilation C4 pathway
WP1502: Mitochondrial biogenesis
WP1531: Vitamin D synthesis
WP1566: Citrate cycle (TCA cycle)
WP1613: 1,4-Dichlorobenzene degradation
WP1616: ABC transporters
WP1624: Bacterial secretion system
WP1625: Base excision repair
WP1644: DNA replication
WP1650: Fluorobenzoate degradation
WP1654: gamma-Hexachlorocyclohexane degradation
WP1657: Glycerolipid metabolism
WP1659: Glycine, serine and threonine metabolism
WP1661: Glyoxylate and dicarboxylate metabolism
WP1663: Homologous recombination
WP1665: Limonene and pinene degradation
WP1672: Mismatch repair
WP1673: Naphthalene and anthracene degradation
WP1675: Nitrogen metabolism

Related Genes :
[CLIP2 CYLN2 KIAA0291 WBSCR3 WBSCR4 WSCR4] CAP-Gly domain-containing linker protein 2 (Cytoplasmic linker protein 115) (CLIP-115) (Cytoplasmic linker protein 2) (Williams-Beuren syndrome chromosomal region 3 protein) (Williams-Beuren syndrome chromosomal region 4 protein)
[CLIP1 CYLN1 RSN] CAP-Gly domain-containing linker protein 1 (Cytoplasmic linker protein 1) (Cytoplasmic linker protein 170 alpha-2) (CLIP-170) (Reed-Sternberg intermediate filament-associated protein) (Restin)
[CLASP2 KIAA0627] CLIP-associating protein 2 (Cytoplasmic linker-associated protein 2) (Protein Orbit homolog 2) (hOrbit2)
[BLNK BASH SLP65] B-cell linker protein (B-cell adapter containing a SH2 domain protein) (B-cell adapter containing a Src homology 2 domain protein) (Cytoplasmic adapter protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (SLP-65)
[Clasp2 Kiaa0627] CLIP-associating protein 2 (Cytoplasmic linker-associated protein 2)
[Blnk Bash Ly57 Slp65] B-cell linker protein (B-cell adapter containing a SH2 domain protein) (B-cell adapter containing a Src homology 2 domain protein) (Cytoplasmic adapter protein) (Lymphocyte antigen 57) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (Slp-65)
[CLASP1 KIAA0622 MAST1] CLIP-associating protein 1 (Cytoplasmic linker-associated protein 1) (Multiple asters homolog 1) (Protein Orbit homolog 1) (hOrbit1)
[Clasp1 Kiaa0622] CLIP-associating protein 1 (Cytoplasmic linker-associated protein 1)
[LAT2 LAB NTAL WBS15 WBSCR15 WBSCR5 HSPC046] Linker for activation of T-cells family member 2 (Linker for activation of B-cells) (Membrane-associated adapter molecule) (Non-T-cell activation linker) (Williams-Beuren syndrome chromosomal region 15 protein) (Williams-Beuren syndrome chromosomal region 5 protein)
[Lat2 Lab Ntal Wbscr15 Wbscr5] Linker for activation of T-cells family member 2 (Linker for activation of B-cells) (Membrane-associated adapter molecule) (Non-T-cell activation linker) (Williams-Beuren syndrome chromosomal region 15 protein homolog)
[CARMIL2 LRRC16C RLTPR] Capping protein, Arp2/3 and myosin-I linker protein 2 (Capping protein regulator and myosin 1 linker 2) (F-actin-uncapping protein RLTPR) (Leucine-rich repeat-containing protein 16C) (RGD, leucine-rich repeat, tropomodulin and proline-rich-containing protein)
[Carmil2 Lrrc16c Rltpr] Capping protein, Arp2/3 and myosin-I linker protein 2 (Capping protein regulator and myosin 1 linker 2) (F-actin-uncapping protein RLTPR) (Leucine-rich repeat-containing protein 16C) (RGD, leucine-rich repeat, tropomodulin and proline-rich-containing protein)
[Carmil1 Carmil Lrrc16 Lrrc16a] F-actin-uncapping protein LRRC16A (CARMIL homolog) (Capping protein regulator and myosin 1 linker protein 1) (Capping protein, Arp2/3 and myosin-I linker homolog 1) (Capping protein, Arp2/3 and myosin-I linker protein 1) (CARML1) (Leucine-rich repeat-containing protein 16A)
[clasp2] CLIP-associating protein 2 (Cytoplasmic linker-associated protein 2)
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[LAT] Linker for activation of T-cells family member 1 (36 kDa phospho-tyrosine adapter protein) (pp36) (p36-38)
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[Lat] Linker for activation of T-cells family member 1 (36 kDa phospho-tyrosine adapter protein) (pp36) (p36-38)
[Rnf115 Zfp364 Znf364] E3 ubiquitin-protein ligase RNF115 (EC 2.3.2.27) (RING finger protein 115) (RING-type E3 ubiquitin transferase RNF115) (Rabring 7) (Zinc finger protein 364)
[rep 1a-1b] Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Cleaved into: Non-structural protein 1 (nsp1) (p9); Non-structural protein 2 (nsp2) (p87); Non-structural protein 3 (nsp3) (EC 3.4.19.12) (EC 3.4.22.-) (PL1-PRO/PL2-PRO) (PLP1/PLP2) (Papain-like proteinases 1/2) (p195); Non-structural protein 4 (nsp4) (Peptide HD2); 3C-like proteinase (3CL-PRO) (3CLp) (EC 3.4.22.-) (M-PRO) (nsp5) (p34); Non-structural protein 6 (nsp6); Non-structural protein 7 (nsp7) (p5); Non-structural protein 8 (nsp8) (p23); Non-structural protein 9 (nsp9) (p12); Non-structural protein 10 (nsp10) (Growth factor-like peptide) (GFL) (p14); RNA-directed RNA polymerase (Pol) (RdRp) (EC 2.7.7.48) (nsp12) (p100); Helicase (Hel) (EC 3.6.4.12) (EC 3.6.4.13) (nsp13) (p66) (p66-HEL); Exoribonuclease (ExoN) (EC 3.1.13.-) (nsp14); Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU) (nsp15) (p41); Putative 2'-O-methyl transferase (EC 2.1.1.-) (nsp16)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[SNA-I LECSNAI SNAI] Ribosome-inactivating protein SNAI (Agglutinin I) [Cleaved into: SNAI-A chain (EC 3.2.2.22) (rRNA N-glycosidase); Linker peptide; SNAI-B chain; TrSNAI]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]

Bibliography :
[26758378] Replication analysis of genetic association of the NCAN-CILP2 region with plasma lipid levels and non-alcoholic fatty liver disease in Asian and Pacific ethnic groups.
[25957251] Dose-dependent expression of CLIP2 in post-Chernobyl papillary thyroid carcinomas.
[25573592] Functional variants of lipid level modifier MLXIPL, GCKR, GALNT2, CILP2, ANGPTL3 and TRIB1 genes in healthy Roma and Hungarian populations.
[24350279] Association of CILP2 and ACE gene polymorphisms with cardiovascular risk factors in Slovak midlife women.
[22208664] Sex-specific association of rs16996148 SNP in the NCAN/CILP2/PBX4 and serum lipid levels in the Mulao and Han populations.
[15951840] Functional, structural, and metabolic abnormalities of the hippocampal formation in Williams syndrome.
[14745832] LIMK1 and CLIP-115: linking cytoskeletal defects to Williams syndrome.
[9799601] The murine CYLN2 gene: genomic organization, chromosome localization, and comparison to the human gene that is located within the 7q11.23 Williams syndrome critical region.
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