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CKLF-like MARVEL transmembrane domain-containing protein 3 (Chemokine-like factor superfamily member 3)

 CKLF3_MOUSE             Reviewed;         184 AA.
Q99LJ5; A6H6B5; Q8BJU1; Q9D165;
19-SEP-2003, integrated into UniProtKB/Swiss-Prot.
01-JUN-2001, sequence version 1.
11-DEC-2019, entry version 115.
RecName: Full=CKLF-like MARVEL transmembrane domain-containing protein 3;
AltName: Full=Chemokine-like factor superfamily member 3;
Name=Cmtm3; Synonyms=Cklfsf3;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Placenta;
Han W., Li T., Tan Y., Shi S., Ding P., Ma D.;
Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Embryo;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.,
Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R.,
Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T.,
Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A.,
Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B.,
Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M.,
Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S.,
Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D.,
Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M.,
Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H.,
Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V.,
Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S.,
Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H.,
Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N.,
Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F.,
Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G.,
Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z.,
Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S.,
Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K.,
Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R.,
van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H.,
Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M.,
Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C.,
Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S.,
Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K.,
Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M.,
Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C.,
Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A.,
Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain, and Mammary gland;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project:
the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
-!- SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
-!- SIMILARITY: Belongs to the chemokine-like factor family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=BAB23056.1; Type=Frameshift; Evidence={ECO:0000305};
---------------------------------------------------------------------------
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EMBL; AY241870; AAP33492.1; -; mRNA.
EMBL; AK003882; BAB23056.1; ALT_FRAME; mRNA.
EMBL; AK079165; BAC37565.1; -; mRNA.
EMBL; BC003230; AAH03230.1; -; mRNA.
EMBL; BC145817; AAI45818.1; -; mRNA.
EMBL; BC145819; AAI45820.1; -; mRNA.
CCDS; CCDS22577.1; -.
RefSeq; NP_077179.1; NM_024217.3.
RefSeq; XP_006531389.1; XM_006531326.1.
RefSeq; XP_006531390.1; XM_006531327.2.
RefSeq; XP_006531391.1; XM_006531328.1.
RefSeq; XP_006531392.1; XM_006531329.2.
BioGrid; 212666; 1.
CORUM; Q99LJ5; -.
STRING; 10090.ENSMUSP00000034343; -.
iPTMnet; Q99LJ5; -.
PhosphoSitePlus; Q99LJ5; -.
SwissPalm; Q99LJ5; -.
MaxQB; Q99LJ5; -.
PaxDb; Q99LJ5; -.
PRIDE; Q99LJ5; -.
Ensembl; ENSMUST00000034343; ENSMUSP00000034343; ENSMUSG00000031875.
Ensembl; ENSMUST00000212081; ENSMUSP00000148682; ENSMUSG00000031875.
GeneID; 68119; -.
KEGG; mmu:68119; -.
UCSC; uc009nam.1; mouse.
CTD; 123920; -.
MGI; MGI:2447162; Cmtm3.
eggNOG; KOG4788; Eukaryota.
eggNOG; ENOG4111IAF; LUCA.
GeneTree; ENSGT00940000160432; -.
HOGENOM; HOG000290654; -.
InParanoid; Q99LJ5; -.
OrthoDB; 1578763at2759; -.
PhylomeDB; Q99LJ5; -.
TreeFam; TF317387; -.
PRO; PR:Q99LJ5; -.
Proteomes; UP000000589; Chromosome 8.
RNAct; Q99LJ5; protein.
Bgee; ENSMUSG00000031875; Expressed in 251 organ(s), highest expression level in decidua.
ExpressionAtlas; Q99LJ5; baseline and differential.
Genevisible; Q99LJ5; MM.
GO; GO:0005737; C:cytoplasm; IDA:MGI.
GO; GO:0005615; C:extracellular space; IEA:UniProtKB-KW.
GO; GO:0016021; C:integral component of membrane; IBA:GO_Central.
GO; GO:0031965; C:nuclear membrane; IDA:MGI.
GO; GO:0005125; F:cytokine activity; IEA:UniProtKB-KW.
GO; GO:0001835; P:blastocyst hatching; IMP:MGI.
GO; GO:0006935; P:chemotaxis; IEA:UniProtKB-KW.
GO; GO:0050861; P:positive regulation of B cell receptor signaling pathway; IDA:MGI.
InterPro; IPR008253; Marvel.
Pfam; PF01284; MARVEL; 1.
PROSITE; PS51225; MARVEL; 1.
2: Evidence at transcript level;
Chemotaxis; Cytokine; Membrane; Reference proteome; Transmembrane;
Transmembrane helix.
CHAIN 1..184
/note="CKLF-like MARVEL transmembrane domain-containing
protein 3"
/id="PRO_0000186102"
TRANSMEM 64..84
/note="Helical"
/evidence="ECO:0000255"
TRANSMEM 96..116
/note="Helical"
/evidence="ECO:0000255"
TRANSMEM 131..151
/note="Helical"
/evidence="ECO:0000255"
DOMAIN 36..155
/note="MARVEL"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00581"
CONFLICT 146
/note="D -> G (in Ref. 2; BAC37565)"
/evidence="ECO:0000305"
SEQUENCE 184 AA; 20247 MW; 6FBB899137D51EB3 CRC64;
MWPPDAEPEP DPESAHGPRS GRTVPGLRAL LPARAFLCSL KGRLLLAESG LSFITFICYV
VSSASAFLTV PLLEFLLAVY FLFADAMQLN DKWQGLCWPM MDFLRCVTAA LIYFVISITA
VAKYSDGAYK AAGVFGFFAT IVFAIDFYLI FNEVAKFLKQ GDSGNETTAH RTEEENSNSD
SDSD


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Pathways :
WP1685: Peptidoglycan biosynthesis
WP1714: Tyrosine metabolism
WP1689: Porphyrin and chlorophyll metabolism
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WP1616: ABC transporters
WP1665: Limonene and pinene degradation
WP2292: Chemokine signaling pathway
WP1675: Nitrogen metabolism
WP1922: SLC-mediated transmembrane transport
WP1046: Signaling of Hepatocyte Growth Factor Receptor
WP2371: Parkinsons Disease Pathway
WP1625: Base excision repair
WP346: Protein Modifications
WP1646: Ethylbenzene degradation
WP1939: Unfolded Protein Response
WP1165: G Protein Signaling Pathways
WP1690: Propanoate metabolism
WP1371: G Protein Signaling Pathways
WP1694: Pyrimidine metabolism
WP525: Mitochondrial Unfolded-Protein Response
WP1657: Glycerolipid metabolism
WP210: Cytoplasmic Ribosomal Proteins
WP1663: Homologous recombination
WP2199: Seed Development
WP1502: Mitochondrial biogenesis

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Bibliography :