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Cell division cycle 5-like protein (Cdc5-like protein) (Atypical R2R3-MYB transcription factor CDC5) (MOS4-associated complex protein 1) (MAC protein 1) (Protein MYB DOMAIN CELL DIVISION CYCLE 5) (AtMYBCD5)

 CDC5L_ARATH             Reviewed;         844 AA.
P92948; B9DFT0; O04498; Q6R0C5;
09-FEB-2010, integrated into UniProtKB/Swiss-Prot.
09-FEB-2010, sequence version 2.
12-AUG-2020, entry version 153.
RecName: Full=Cell division cycle 5-like protein;
Short=Cdc5-like protein;
AltName: Full=Atypical R2R3-MYB transcription factor CDC5;
AltName: Full=MOS4-associated complex protein 1;
Short=MAC protein 1;
AltName: Full=Protein MYB DOMAIN CELL DIVISION CYCLE 5;
Short=AtMYBCD5;
Name=CDC5; Synonyms=MAC1, MYBCD5; OrderedLocusNames=At1g09770;
ORFNames=F21M12.15;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=8917598; DOI=10.1073/pnas.93.23.13371;
Hirayama T., Shinozaki K.;
"A cdc5+ homolog of a higher plant, Arabidopsis thaliana.";
Proc. Natl. Acad. Sci. U.S.A. 93:13371-13376(1996).
[2]
NUCLEOTIDE SEQUENCE [MRNA], AND GENE FAMILY.
STRAIN=cv. Columbia;
PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X.,
Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H.,
Qu L.-J.;
"The MYB transcription factor superfamily of Arabidopsis: expression
analysis and phylogenetic comparison with the rice MYB family.";
Plant Mol. Biol. 60:107-124(2006).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
Nature 408:816-820(2000).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana reference
genome.";
Plant J. 89:789-804(2017).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-504.
STRAIN=cv. Columbia; TISSUE=Rosette leaf;
PubMed=19423640; DOI=10.1093/dnares/dsp009;
Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
Shinozaki K.;
"Analysis of multiple occurrences of alternative splicing events in
Arabidopsis thaliana using novel sequenced full-length cDNAs.";
DNA Res. 16:155-164(2009).
[7]
GENE FAMILY.
PubMed=11597504; DOI=10.1016/s1369-5266(00)00199-0;
Stracke R., Werber M., Weisshaar B.;
"The R2R3-MYB gene family in Arabidopsis thaliana.";
Curr. Opin. Plant Biol. 4:447-456(2001).
[8]
DISRUPTION PHENOTYPE, FUNCTION, COMPONENT OF THE MAC COMPLEX, AND
INTERACTION WITH PRL1 AND MOS4.
PubMed=17575050; DOI=10.1101/gad.1559607;
Palma K., Zhao Q., Cheng Y.T., Bi D., Monaghan J., Cheng W., Zhang Y.,
Li X.;
"Regulation of plant innate immunity by three proteins in a complex
conserved across the plant and animal kingdoms.";
Genes Dev. 21:1484-1493(2007).
[9]
DISRUPTION PHENOTYPE, FUNCTION, AND SUBCELLULAR LOCATION.
PubMed=17298883; DOI=10.1016/j.plaphy.2006.12.003;
Lin Z., Yin K., Wang X., Liu M., Chen Z., Gu H., Qu L.J.;
"Virus induced gene silencing of AtCDC5 results in accelerated cell death
in Arabidopsis leaves.";
Plant Physiol. Biochem. 45:87-94(2007).
[10]
IDENTIFICATION BY MASS SPECTROMETRY, COMPONENT OF THE MAC COMPLEX, AND
INTERACTION WITH PRP19A.
PubMed=19629177; DOI=10.1371/journal.ppat.1000526;
Monaghan J., Xu F., Gao M., Zhao Q., Palma K., Long C., Chen S., Zhang Y.,
Li X.;
"Two Prp19-like U-box proteins in the MOS4-associated complex play
redundant roles in plant innate immunity.";
PLoS Pathog. 5:E1000526-E1000526(2009).
[11]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-343, AND IDENTIFICATION BY
MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19376835; DOI=10.1104/pp.109.138677;
Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
Grossmann J., Gruissem W., Baginsky S.;
"Large-scale Arabidopsis phosphoproteome profiling reveals novel
chloroplast kinase substrates and phosphorylation networks.";
Plant Physiol. 150:889-903(2009).
-!- FUNCTION: Component of the MAC complex that probably regulates defense
responses through transcriptional control and thereby is essential for
plant innate immunity. Possesses a sequence specific DNA sequence
'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle
control. May also play a role in the response to DNA damage.
{ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883,
ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
-!- SUBUNIT: Component of the multiprotein assembly MOS4-associated complex
(MAC) at least composed of MOS4, CDC5, PRL1 and PRP19. Interacts with
PRL1, MOS4 and PRP19A. Associated with the spliceosome.
{ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:19629177}.
-!- INTERACTION:
P92948; Q949S9: MOS4; NbExp=3; IntAct=EBI-1382948, EBI-1382943;
P92948; Q42384: PRL1; NbExp=2; IntAct=EBI-1382948, EBI-1382964;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625,
ECO:0000269|PubMed:17298883}.
-!- TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems.
{ECO:0000269|PubMed:8917598}.
-!- DISRUPTION PHENOTYPE: Accelerated cell death. Enhanced susceptibility
to virulent and avirulent pathogens. {ECO:0000269|PubMed:17298883,
ECO:0000269|PubMed:17575050}.
-!- SIMILARITY: Belongs to the CEF1 family. {ECO:0000305}.
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EMBL; D58424; BAA09598.1; -; mRNA.
EMBL; AY519553; AAS10023.1; -; mRNA.
EMBL; AC000132; AAB60730.1; -; Genomic_DNA.
EMBL; CP002684; AEE28490.1; -; Genomic_DNA.
EMBL; AY093057; AAM13056.1; -; mRNA.
EMBL; BT008801; AAP68240.1; -; mRNA.
EMBL; AK316890; BAH19597.1; -; mRNA.
PIR; F86231; F86231.
RefSeq; NP_172448.1; NM_100849.3.
BioGRID; 22747; 14.
IntAct; P92948; 6.
STRING; 3702.AT1G09770.1; -.
iPTMnet; P92948; -.
PaxDb; P92948; -.
PRIDE; P92948; -.
ProteomicsDB; 222807; -.
EnsemblPlants; AT1G09770.1; AT1G09770.1; AT1G09770.
GeneID; 837506; -.
Gramene; AT1G09770.1; AT1G09770.1; AT1G09770.
KEGG; ath:AT1G09770; -.
Araport; AT1G09770; -.
TAIR; locus:2024336; AT1G09770.
eggNOG; KOG0050; Eukaryota.
HOGENOM; CLU_009082_1_0_1; -.
InParanoid; P92948; -.
KO; K12860; -.
OMA; PFRTQRE; -.
OrthoDB; 975557at2759; -.
PhylomeDB; P92948; -.
PRO; PR:P92948; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; P92948; baseline and differential.
Genevisible; P92948; AT.
GO; GO:0005576; C:extracellular region; HDA:TAIR.
GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
GO; GO:0009870; P:defense response signaling pathway, resistance gene-dependent; IMP:TAIR.
GO; GO:0042742; P:defense response to bacterium; IMP:TAIR.
GO; GO:0050832; P:defense response to fungus; IMP:TAIR.
GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
GO; GO:0045087; P:innate immune response; IEA:UniProtKB-KW.
GO; GO:0002758; P:innate immune response-activating signal transduction; IMP:TAIR.
GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
CDD; cd00167; SANT; 1.
InterPro; IPR021786; Cdc5p/Cef1.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF11831; Myb_Cef; 1.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
1: Evidence at protein level;
Activator; Cell cycle; Coiled coil; DNA damage; DNA repair; DNA-binding;
Immunity; Innate immunity; mRNA processing; mRNA splicing; Nucleus;
Phosphoprotein; Plant defense; Reference proteome; Repeat; Spliceosome;
Transcription; Transcription regulation.
CHAIN 1..844
/note="Cell division cycle 5-like protein"
/id="PRO_0000391630"
DOMAIN 2..57
/note="HTH myb-type 1"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
DOMAIN 58..107
/note="HTH myb-type 2"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
DNA_BIND 30..53
/note="H-T-H motif"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
DNA_BIND 81..103
/note="H-T-H motif"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
COILED 145..189
/evidence="ECO:0000255"
COILED 685..723
/evidence="ECO:0000255"
MOD_RES 343
/note="Phosphothreonine"
/evidence="ECO:0000244|PubMed:19376835"
CONFLICT 177
/note="E -> K (in Ref. 2; AAS10023)"
/evidence="ECO:0000305"
CONFLICT 460..461
/note="HE -> QQ (in Ref. 1; BAA09598)"
/evidence="ECO:0000305"
CONFLICT 476
/note="S -> G (in Ref. 6; BAH19597)"
/evidence="ECO:0000305"
SEQUENCE 844 AA; 95767 MW; B640967BB8AB4614 CRC64;
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT
EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDAADDPR
KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR
LASLQKRREL KAAGIDGRHR KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT
TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG
KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP RKKEIQTPNP MLTPSMTPGG
AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG
LTGLPQPKNE YQIVAQPPPE ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ
RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE
AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV RKKMEEDEKK AEHMKAKYKT
YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE
TESKLQTRYG NMLAMVEKAE EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM
EASA


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[cwf10 snu114 spef2 SPBC215.12] Pre-mRNA-splicing factor cwf10 (114 kDa U5 small nuclear ribonucleoprotein component homolog) (Complexed with cdc5 protein 10)
[prp19 cwf8 SPAC29A4.08c] Pre-mRNA-processing factor 19 (EC 2.3.2.27) (Complexed with cdc5 protein 8) (RING-type E3 ubiquitin transferase PRP19)
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[cwf2 prp3 SPAC3A12.11c] Pre-mRNA-splicing factor cwf2 (Complexed with cdc5 protein 2) (Pre-mRNA-processing protein 3)
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[prp5 cwf1 pi024 SPBP22H7.07] Pre-mRNA-splicing factor prp5 (Complexed with cdc5 protein 1) (Pre-mRNA-processing protein 5)
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[cwf12 isy1 SPBC32F12.05c] Pre-mRNA-splicing factor cwf12 (Complexed with cdc5 protein 12)
[cwf5 ecm2 SPCC550.02c] Pre-mRNA-splicing factor cwf5 (Complexed with cdc5 protein 5)
[cwf3 syf1 SPBC211.02c] Pre-mRNA-splicing factor cwf3 (Complexed with cdc5 protein 3)
[CDC43 CAL1 YGL155W G1864] Geranylgeranyl transferase type-1 subunit beta (GGTase-I-beta) (EC 2.5.1.59) (Cell division cycle protein 43) (Geranylgeranyl transferase type I subunit beta) (RAS proteins geranylgeranyltransferase subunit beta) (Type I protein geranyl-geranyltransferase subunit beta) (PGGTase I beta)
[MYB124 FLP At1g14350 F14L17.12] Transcription factor MYB124 (Myb-related protein 124) (AtMYB124) (Protein FOUR LIPS)
[smd2 cwf9 SPAC2C4.03c] Small nuclear ribonucleoprotein Sm D2 (Sm-D2) (Complexed with cdc5 protein 9) (snRNP core protein D2)
[MYB33 At5g06100 K16F4.6] Transcription factor MYB33 (Myb-related protein 33) (AtMYB33)
[cwf4 syf3 SPBC31F10.11c] Pre-mRNA-splicing factor cwf4 (Complexed with cdc5 protein 4)
[MYB88 At2g02820 T20F6.4] Transcription factor MYB88 (Myb-related protein 88) (AtMYB88)
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[CCAR1 CARP1 DIS] Cell division cycle and apoptosis regulator protein 1 (Cell cycle and apoptosis regulatory protein 1) (CARP-1) (Death inducer with SAP domain)
[cwf15 SPBC337.06c] Pre-mRNA-splicing factor cwf15 (Complexed with cdc5 protein 15)
[MYB28 HAG1 PMG1 At5g61420 MFB13.22] Transcription factor MYB28 (Myb-related protein 28) (AtMYB28) (Protein HIGH ALIPHATIC GLUCOSINOLATE 1) (Protein PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1)
[MYB3R1 PC-MYB1 At4g32730 F4D11.70] Transcription factor MYB3R-1 (Myb-related protein 3R-1) (Plant c-MYB-like protein 1) (Protein PC-MYB1)
[cwf22 SPBC13E7.01 SPBC15D4.16] Pre-mRNA-splicing factor cwf22 (Complexed with cdc5 protein 22)
[cwf7 spf27 SPBC28F2.04c] Pre-mRNA-splicing factor cwf7 (Complexed with cdc5 protein 7) (Splicing factor 27)
[CDK9 CDC2L4 TAK] Cyclin-dependent kinase 9 (EC 2.7.11.22) (EC 2.7.11.23) (C-2K) (Cell division cycle 2-like protein kinase 4) (Cell division protein kinase 9) (Serine/threonine-protein kinase PITALRE) (Tat-associated kinase complex catalytic subunit)

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