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Cell division cycle protein 27 homolog B (CDC27 homolog B) (Protein HOBBIT)

 CD27B_ARATH             Reviewed;         744 AA.
Q8LGU6; Q8W4M8; Q9SL81;
10-AUG-2010, integrated into UniProtKB/Swiss-Prot.
01-OCT-2002, sequence version 1.
12-AUG-2020, entry version 127.
RecName: Full=Cell division cycle protein 27 homolog B;
Short=CDC27 homolog B;
AltName: Full=Protein HOBBIT;
Name=CDC27B; Synonyms=HBT; OrderedLocusNames=At2g20000; ORFNames=T2G17.20;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND FUNCTION.
PubMed=12368267; DOI=10.1101/gad.237302;
Blilou I., Frugier F., Folmer S., Serralbo O., Willemsen V., Wolkenfelt H.,
Eloy N.B., Ferreira P.C., Weisbeek P., Scheres B.;
"The Arabidopsis HOBBIT gene encodes a CDC27 homolog that links the plant
cell cycle to progression of cell differentiation.";
Genes Dev. 16:2566-2575(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
Nature 402:761-768(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana reference
genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
FUNCTION, INTERACTION WITH APC2; APC10; FZR2 AND FZR3, SUBCELLULAR
LOCATION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
PubMed=17944809; DOI=10.1111/j.1365-313x.2007.03312.x;
Perez-Perez J.M., Serralbo O., Vanstraelen M., Gonzalez C., Criqui M.C.,
Genschik P., Kondorosi E., Scheres B.;
"Specialization of CDC27 function in the Arabidopsis thaliana anaphase-
promoting complex (APC/C).";
Plant J. 53:78-89(2008).
[6]
IDENTIFICATION BY MASS SPECTROMETRY, AND INTERACTION WITH SAMBA.
PubMed=22869741; DOI=10.1073/pnas.1211418109;
Eloy N.B., Gonzalez N., Van Leene J., Maleux K., Vanhaeren H., De Milde L.,
Dhondt S., Vercruysse L., Witters E., Mercier R., Cromer L., Beemster G.T.,
Remaut H., Van Montagu M.C., De Jaeger G., Ferreira P.C., Inze D.;
"SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is
involved in early development and A-type cyclin stabilization.";
Proc. Natl. Acad. Sci. U.S.A. 109:13853-13858(2012).
[7]
INTERACTION WITH PANS1.
PubMed=24206843; DOI=10.1016/j.cub.2013.08.036;
Cromer L., Jolivet S., Horlow C., Chelysheva L., Heyman J., De Jaeger G.,
Koncz C., De Veylder L., Mercier R.;
"Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at
anaphase I and by PATRONUS at interkinesis.";
Curr. Biol. 23:2090-2099(2013).
-!- FUNCTION: Component of the anaphase promoting complex/cyclosome
(APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex
that controls progression through mitosis and the G1 phase of the cell
cycle. The APC/C complex controls several key steps in the cell cycle
by mediating ubiquitination and subsequent degradation of target
proteins such as cyclins. The APC/C complex is required for the female
gametophyte development and is involved in several aspect of
development by controlling cell division and cell elongation. Involved
in the control of endoreduplication. Functionally redundant with CDC27A
in the control of gametophyte development.
{ECO:0000269|PubMed:12368267, ECO:0000269|PubMed:17944809}.
-!- PATHWAY: Protein modification; protein ubiquitination.
-!- SUBUNIT: The APC/C is composed of at least 10 subunits (By similarity).
Can homodimerize (By similarity). Interacts with APC2, APC10, FZR2 and
FZR3 (PubMed:17944809). Interacts with PANS1 (PubMed:24206843).
Interacts with SAMBA (PubMed:22869741). {ECO:0000250,
ECO:0000269|PubMed:17944809, ECO:0000269|PubMed:22869741,
ECO:0000269|PubMed:24206843}.
-!- INTERACTION:
Q8LGU6; Q9ZPW2: APC10; NbExp=3; IntAct=EBI-1668733, EBI-1749354;
Q8LGU6; Q8H1U5: APC2; NbExp=3; IntAct=EBI-1668733, EBI-1749410;
Q8LGU6; Q9SZA4: CDC20-1; NbExp=2; IntAct=EBI-1668733, EBI-1668707;
Q8LGU6; Q8VZS9: FZR1; NbExp=2; IntAct=EBI-1668733, EBI-1749329;
Q8LGU6; Q8LPL5: FZR3; NbExp=2; IntAct=EBI-1668733, EBI-1749341;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:17944809}.
-!- TISSUE SPECIFICITY: Specifically expressed in dividing and elongating
cells. {ECO:0000269|PubMed:17944809}.
-!- DISRUPTION PHENOTYPE: Dwarf plant with small leaves and stunted growth.
Defect in cell division and expansion. Defective endoreduplication.
Cdc27a and cdc27b double mutant is gametophytic lethal
(PubMed:17944809). {ECO:0000269|PubMed:17944809}.
-!- SIMILARITY: Belongs to the APC3/CDC27 family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAD24396.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=AAL32548.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};
Sequence=AAM91180.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};
---------------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; AJ487669; CAD31951.1; -; mRNA.
EMBL; AC006081; AAD24396.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002685; AEC06953.1; -; Genomic_DNA.
EMBL; AY062470; AAL32548.1; ALT_SEQ; mRNA.
EMBL; AY128780; AAM91180.1; ALT_SEQ; mRNA.
PIR; G84583; G84583.
RefSeq; NP_849994.1; NM_179663.3.
SMR; Q8LGU6; -.
BioGRID; 1874; 18.
ELM; Q8LGU6; -.
IntAct; Q8LGU6; 21.
STRING; 3702.AT2G20000.1; -.
iPTMnet; Q8LGU6; -.
PaxDb; Q8LGU6; -.
ProteomicsDB; 223968; -.
EnsemblPlants; AT2G20000.1; AT2G20000.1; AT2G20000.
GeneID; 816519; -.
Gramene; AT2G20000.1; AT2G20000.1; AT2G20000.
KEGG; ath:AT2G20000; -.
Araport; AT2G20000; -.
TAIR; locus:2061649; AT2G20000.
eggNOG; KOG1126; Eukaryota.
HOGENOM; CLU_008850_1_1_1; -.
InParanoid; Q8LGU6; -.
KO; K03350; -.
OMA; PSFGIMP; -.
OrthoDB; 280620at2759; -.
PhylomeDB; Q8LGU6; -.
UniPathway; UPA00143; -.
PRO; PR:Q8LGU6; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; Q8LGU6; baseline and differential.
Genevisible; Q8LGU6; AT.
GO; GO:0005680; C:anaphase-promoting complex; IBA:GO_Central.
GO; GO:0009504; C:cell plate; IDA:TAIR.
GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0005819; C:spindle; IDA:TAIR.
GO; GO:0031145; P:anaphase-promoting complex-dependent catabolic process; IBA:GO_Central.
GO; GO:0030154; P:cell differentiation; IMP:TAIR.
GO; GO:0051301; P:cell division; IBA:GO_Central.
GO; GO:0007091; P:metaphase/anaphase transition of mitotic cell cycle; IBA:GO_Central.
GO; GO:0045842; P:positive regulation of mitotic metaphase/anaphase transition; IBA:GO_Central.
GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central.
GO; GO:0007346; P:regulation of mitotic cell cycle; IMP:TAIR.
GO; GO:0009733; P:response to auxin; IMP:TAIR.
GO; GO:0048829; P:root cap development; IMP:TAIR.
GO; GO:0048364; P:root development; IMP:TAIR.
GO; GO:0010071; P:root meristem specification; IMP:TAIR.
Gene3D; 1.25.40.10; -; 4.
InterPro; IPR013026; TPR-contain_dom.
InterPro; IPR011990; TPR-like_helical_dom_sf.
InterPro; IPR001440; TPR_1.
InterPro; IPR019734; TPR_repeat.
Pfam; PF00515; TPR_1; 1.
Pfam; PF13181; TPR_8; 1.
SMART; SM00028; TPR; 8.
SUPFAM; SSF48452; SSF48452; 2.
PROSITE; PS50005; TPR; 8.
PROSITE; PS50293; TPR_REGION; 2.
1: Evidence at protein level;
Cell cycle; Cell division; Mitosis; Nucleus; Reference proteome; Repeat;
TPR repeat; Ubl conjugation pathway.
CHAIN 1..744
/note="Cell division cycle protein 27 homolog B"
/id="PRO_0000396840"
REPEAT 101..134
/note="TPR 1"
REPEAT 450..483
/note="TPR 2"
REPEAT 518..551
/note="TPR 3"
REPEAT 553..585
/note="TPR 4"
REPEAT 587..619
/note="TPR 5"
REPEAT 621..653
/note="TPR 6"
REPEAT 655..687
/note="TPR 7"
REPEAT 688..721
/note="TPR 8"
SEQUENCE 744 AA; 83068 MW; 1CB1719C75469861 CRC64;
MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG
TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG AAGHYLLGLI YKYTDRRKNA
AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN
EERNSTSTKN TSSEDYSPRQ SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ
LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN
MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA MSSQTITIGV SEILNLLRTL
GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS
PYCLEGMDIY STVLYHLKED MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN
FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK
ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR RNMHDKAMLH FGLALDMKPP
ATDVAAIKAA MEKLHVPDEI DESP


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WP1624: Bacterial secretion system
WP2272: Pathogenic Escherichia coli infection
WP1689: Porphyrin and chlorophyll metabolism
WP1371: G Protein Signaling Pathways
WP1693: Purine metabolism
WP2032: TSH signaling pathway
WP32: Translation Factors
WP1078: G1 to S cell cycle control
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WP1782: APC/C-mediated degradation of cell cycle proteins
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[Cdk11b Cdc2l1 Cdk11] Cyclin-dependent kinase 11B (Cell division cycle 2-like protein kinase 1) (Cell division protein kinase 11) (Cyclin-dependent kinase 11) (EC 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (PITSLRE serine/threonine-protein kinase CDC2L1)
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[CDK1 CDC2 CDC28A CDKN1 P34CDC2] Cyclin-dependent kinase 1 (CDK1) (EC 2.7.11.22) (EC 2.7.11.23) (Cell division control protein 2 homolog) (Cell division protein kinase 1) (p34 protein kinase)
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[CDC14A] Dual specificity protein phosphatase CDC14A (EC 3.1.3.16) (EC 3.1.3.48) (CDC14 cell division cycle 14 homolog A)
[CDC48 YDL126C] Cell division control protein 48 (EC 3.6.4.6) (Cell division cycle protein 48) (Transitional endoplasmic reticulum ATPase homolog)
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[CDC42] Cell division control protein 42 homolog (EC 3.6.5.2) (G25K GTP-binding protein)
[ftsZ sfiB sulB b0095 JW0093] Cell division protein FtsZ
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[CDKA-1 CDC2 CDC2A At3g48750 T21J18.20] Cyclin-dependent kinase A-1 (CDKA;1) (EC 2.7.11.22) (EC 2.7.11.23) (Cell division control protein 2 homolog A) (CDC2aAt)
[cdc42 SPAC110.03] Cell division control protein 42 homolog (CDC42Sp)
[PTEN MMAC1 TEP1] Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (EC 3.1.3.16) (EC 3.1.3.48) (EC 3.1.3.67) (Mutated in multiple advanced cancers 1) (Phosphatase and tensin homolog)
[Cdc42] Cell division control protein 42 homolog (EC 3.6.5.2) (G25K GTP-binding protein)
[CDC7 CDC7L1] Cell division cycle 7-related protein kinase (CDC7-related kinase) (HsCdc7) (huCdc7) (EC 2.7.11.1)
[cdc-42 R07G3.1] Cell division control protein 42 homolog (CDC42Ce)
[Cdk5 CG8203] Cyclin-dependent kinase 5 homolog (EC 2.7.11.22) (Cell division protein kinase 5)
[CDC48A CDC48 At3g09840 F8A24.11] Cell division control protein 48 homolog A (AtCDC48a)
[CDC45 CDC45L CDC45L2 UNQ374/PRO710] Cell division control protein 45 homolog (PORC-PI-1)
[CPFTSY FTSY At2g45770 F4I18.25] Cell division protein FtsY homolog, chloroplastic (Chloroplast SRP receptor homolog, alpha subunit CpFtsY) (Fused signal recognition particle receptor)
[CDC6 CDC18L] Cell division control protein 6 homolog (CDC6-related protein) (Cdc18-related protein) (HsCdc18) (p62(cdc6)) (HsCDC6)
[CDKB1-1 CDC2B At3g54180 F24B22.140] Cyclin-dependent kinase B1-1 (CDKB1;1) (EC 2.7.11.22) (EC 2.7.11.23) (Cell division control protein 2 homolog B)

Bibliography :
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