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Centromere DNA-binding protein complex CBF3 subunit B (Centromere protein 3)

 CBF3B_YEAST             Reviewed;         608 AA.
P40969; D6VZZ0;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
01-FEB-1995, sequence version 1.
13-FEB-2019, entry version 152.
RecName: Full=Centromere DNA-binding protein complex CBF3 subunit B;
Short=Centromere protein 3;
Name=CEP3; Synonyms=CBF3, CBF3B, CSL1; OrderedLocusNames=YMR168C;
ORFNames=YM8520.17C;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=AC 502;
PubMed=7957085;
Lechner J.;
"A zinc finger protein, essential for chromosome segregation,
constitutes a putative DNA binding subunit of the Saccharomyces
cerevisiae kinetochore complex, Cbf3.";
EMBO J. 13:5203-5211(1994).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=7876302; DOI=10.1083/jcb.128.5.749;
Strunnikov A.V., Kingsbury J., Koshland D.;
"CEP3 encodes a centromere protein of Saccharomyces cerevisiae.";
J. Cell Biol. 128:749-760(1995).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169872;
Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T.,
Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S.,
Jagels K., Lye G., Moule S., Odell C., Pearson D., Rajandream M.A.,
Rice P., Skelton J., Walsh S.V., Whitehead S., Barrell B.G.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome
XIII.";
Nature 387:90-93(1997).
[4]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[5]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[6]
ASSEMBLY OF THE CBF3 COMPLEX.
PubMed=15090617; DOI=10.1091/mbc.E03-12-0887;
Rodrigo-Brenni M.C., Thomas S., Bouck D.C., Kaplan K.B.;
"Sgt1p and Skp1p modulate the assembly and turnover of CBF3 complexes
required for proper kinetochore function.";
Mol. Biol. Cell 15:3366-3378(2004).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-575, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=18407956; DOI=10.1074/mcp.M700468-MCP200;
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.;
"A multidimensional chromatography technology for in-depth
phosphoproteome analysis.";
Mol. Cell. Proteomics 7:1389-1396(2008).
-!- FUNCTION: Acts as a component of the centromere DNA-binding
protein complex CBF3, which is essential for chromosome
segregation and movement of centromeres along microtubules. CBF3
is required for the recruitment of other kinetochore complexes to
CEN DNA. It plays a role in the attachment of chromosomes to the
spindle and binds selectively to a highly conserved DNA sequence
called CDEIII, found in centromers and in several promoters.
-!- SUBUNIT: Component of the CBF3 copmplex, which is formed of
CBF3A/CBF2, CBF3B/CEP3, CBF3C/CTF13 and CBF3D.
-!- INTERACTION:
Self; NbExp=2; IntAct=EBI-4077, EBI-4077;
P35203:CTF13; NbExp=2; IntAct=EBI-4077, EBI-4085;
P22216:RAD53; NbExp=2; IntAct=EBI-4077, EBI-17843;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. Chromosome,
centromere.
-!- MISCELLANEOUS: Present with 1900 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; X81396; CAA57159.1; -; Genomic_DNA.
EMBL; U12339; AAA57074.1; -; Genomic_DNA.
EMBL; Z49705; CAA89804.1; -; Genomic_DNA.
EMBL; BK006946; DAA10064.1; -; Genomic_DNA.
PIR; S51790; S51790.
RefSeq; NP_013891.1; NM_001182672.1.
PDB; 2QUQ; X-ray; 2.80 A; A=47-608.
PDB; 2VEQ; X-ray; 2.49 A; A=48-608.
PDB; 6F07; EM; 3.60 A; A/B=1-608.
PDB; 6FE8; EM; 3.70 A; A/B=47-608.
PDB; 6GSA; EM; 4.20 A; A/B=47-608.
PDB; 6GYS; EM; 4.40 A; B/C/I/J=1-608.
PDBsum; 2QUQ; -.
PDBsum; 2VEQ; -.
PDBsum; 6F07; -.
PDBsum; 6FE8; -.
PDBsum; 6GSA; -.
PDBsum; 6GYS; -.
ProteinModelPortal; P40969; -.
SMR; P40969; -.
BioGrid; 35346; 599.
ComplexPortal; CPX-1898; CBF3 complex.
DIP; DIP-5956N; -.
IntAct; P40969; 11.
MINT; P40969; -.
STRING; 4932.YMR168C; -.
iPTMnet; P40969; -.
MaxQB; P40969; -.
PaxDb; P40969; -.
PRIDE; P40969; -.
EnsemblFungi; YMR168C_mRNA; YMR168C_mRNA; YMR168C.
GeneID; 855204; -.
KEGG; sce:YMR168C; -.
EuPathDB; FungiDB:YMR168C; -.
SGD; S000004778; CEP3.
HOGENOM; HOG000111345; -.
InParanoid; P40969; -.
KO; K11575; -.
OMA; VKCDRLV; -.
BioCyc; YEAST:G3O-32858-MONOMER; -.
EvolutionaryTrace; P40969; -.
PRO; PR:P40969; -.
Proteomes; UP000002311; Chromosome XIII.
GO; GO:0031518; C:CBF3 complex; IDA:SGD.
GO; GO:0000778; C:condensed nuclear chromosome kinetochore; IDA:SGD.
GO; GO:0019237; F:centromeric DNA binding; IDA:SGD.
GO; GO:0008301; F:DNA binding, bending; IDA:SGD.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
GO; GO:0042802; F:identical protein binding; IPI:IntAct.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0007094; P:mitotic spindle assembly checkpoint; IMP:SGD.
GO; GO:0000921; P:septin ring assembly; IMP:SGD.
CDD; cd00067; GAL4; 1.
Gene3D; 4.10.240.10; -; 1.
InterPro; IPR031760; Cep3_C.
InterPro; IPR001138; Zn2-C6_fun-type_DNA-bd.
InterPro; IPR036864; Zn2-C6_fun-type_DNA-bd_sf.
Pfam; PF16846; Cep3; 1.
Pfam; PF00172; Zn_clus; 1.
SMART; SM00066; GAL4; 1.
SUPFAM; SSF57701; SSF57701; 1.
PROSITE; PS00463; ZN2_CY6_FUNGAL_1; 1.
PROSITE; PS50048; ZN2_CY6_FUNGAL_2; 1.
1: Evidence at protein level;
3D-structure; Centromere; Chromosome; Complete proteome; DNA-binding;
Metal-binding; Nucleus; Phosphoprotein; Reference proteome; Zinc.
CHAIN 1 608 Centromere DNA-binding protein complex
CBF3 subunit B.
/FTId=PRO_0000114941.
DNA_BIND 14 42 Zn(2)-C6 fungal-type.
{ECO:0000255|PROSITE-ProRule:PRU00227}.
MOD_RES 575 575 Phosphoserine.
{ECO:0000244|PubMed:18407956}.
HELIX 58 71 {ECO:0000244|PDB:2VEQ}.
TURN 72 74 {ECO:0000244|PDB:2VEQ}.
HELIX 75 79 {ECO:0000244|PDB:2VEQ}.
HELIX 85 87 {ECO:0000244|PDB:2VEQ}.
TURN 92 95 {ECO:0000244|PDB:2VEQ}.
HELIX 96 105 {ECO:0000244|PDB:2VEQ}.
HELIX 108 121 {ECO:0000244|PDB:2VEQ}.
HELIX 123 130 {ECO:0000244|PDB:2VEQ}.
HELIX 134 146 {ECO:0000244|PDB:2VEQ}.
HELIX 154 173 {ECO:0000244|PDB:2VEQ}.
HELIX 176 182 {ECO:0000244|PDB:2VEQ}.
HELIX 186 192 {ECO:0000244|PDB:2VEQ}.
HELIX 200 202 {ECO:0000244|PDB:2VEQ}.
HELIX 204 222 {ECO:0000244|PDB:2VEQ}.
TURN 223 227 {ECO:0000244|PDB:2VEQ}.
HELIX 231 240 {ECO:0000244|PDB:2VEQ}.
TURN 241 244 {ECO:0000244|PDB:2VEQ}.
HELIX 245 248 {ECO:0000244|PDB:2VEQ}.
HELIX 250 265 {ECO:0000244|PDB:2VEQ}.
HELIX 280 302 {ECO:0000244|PDB:2VEQ}.
HELIX 313 315 {ECO:0000244|PDB:2QUQ}.
HELIX 338 356 {ECO:0000244|PDB:2VEQ}.
TURN 357 360 {ECO:0000244|PDB:2VEQ}.
HELIX 367 385 {ECO:0000244|PDB:2VEQ}.
HELIX 394 422 {ECO:0000244|PDB:2VEQ}.
HELIX 427 443 {ECO:0000244|PDB:2VEQ}.
HELIX 444 446 {ECO:0000244|PDB:2VEQ}.
TURN 447 449 {ECO:0000244|PDB:2VEQ}.
HELIX 451 455 {ECO:0000244|PDB:2VEQ}.
HELIX 457 476 {ECO:0000244|PDB:2VEQ}.
HELIX 480 495 {ECO:0000244|PDB:2VEQ}.
HELIX 498 500 {ECO:0000244|PDB:2VEQ}.
HELIX 501 522 {ECO:0000244|PDB:2VEQ}.
STRAND 530 534 {ECO:0000244|PDB:2VEQ}.
HELIX 536 550 {ECO:0000244|PDB:2VEQ}.
HELIX 555 562 {ECO:0000244|PDB:2VEQ}.
HELIX 589 600 {ECO:0000244|PDB:2VEQ}.
HELIX 603 606 {ECO:0000244|PDB:2VEQ}.
SEQUENCE 608 AA; 71358 MW; 2E24A0508080A09B CRC64;
MFNRTTQLKS KHPCSVCTRR KVKCDRMIPC GNCRKRGQDS ECMKSTKLIT ASSSKEYLPD
LLLFWQNYEY WITNIGLYKT KQRDLTRTPA NLDTDTEECM FWMNYLQKDQ SFQLMNFAME
NLGALYFGSI GDISELYLRV EQYWDRRADK NHSVDGKYWD ALIWSVFTMC IYYMPVEKLA
EIFSVYPLHE YLGSNKRLNW EDGMQLVMCQ NFARCSLFQL KQCDFMAHPD IRLVQAYLIL
ATTTFPYDEP LLANSLLTQC IHTFKNFHVD DFRPLLNDDP VESIAKVTLG RIFYRLCGCD
YLQSGPRKPI ALHTEVSSLL QHAAYLQDLP NVDVYREENS TEVLYWKIIS LDRDLDQYLN
KSSKPPLKTL DAIRRELDIF QYKVDSLEED FRSNNSRFQK FIALFQISTV SWKLFKMYLI
YYDTADSLLK VIHYSKVIIS LIVNNFHAKS EFFNRHPMVM QTITRVVSFI SFYQIFVESA
AVKQLLVDLT ELTANLPTIF GSKLDKLVYL TERLSKLKLL WDKVQLLDSG DSFYHPVFKI
LQNDIKIIEL KNDEMFSLIK GLGSLVPLNK LRQESLLEEE DENNTEPSDF RTIVEEFQSE
YNISDILS


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Related Genes :
[SKP1 CBF3D YDR328C D9798.14] Suppressor of kinetochore protein 1 (Centromere DNA-binding protein complex CBF3 subunit D) (E3 ubiquitin ligase complex SCF subunit SKP1)
[] Beta-phenylalanine transaminase (EC 2.6.1.-) (Aromatic beta-amino acid aminotransferase) (Beta-phenylalanine aminotransferase) (VpAT)
[DREB1A CBF3 CRAP2 ERF072 At4g25480 M7J2.150] Dehydration-responsive element-binding protein 1A (Protein DREB1A) (C-repeat/dehydration-responsive element-binding factor 3) (C-repeat-binding factor 3) (CRT/DRE-binding factor 3) (Cold resistance-related AP2 transcription factor)
[CBF1 CEP1 CP1 CPF1 YJR060W J1730] Centromere-binding protein 1 (CBP-1) (Centromere promoter factor 1) (Centromere-binding factor 1)
[MET30 YIL046W] F-box protein MET30 (E3 ubiquitin ligase complex SCF(Met30) subunit MET30) (Methionine-requiring protein 30)
[CENPT C16orf56 ICEN22] Centromere protein T (CENP-T) (Interphase centromere complex protein 22)
[CENPI FSHPRH1 ICEN19 LRPR1] Centromere protein I (CENP-I) (FSH primary response protein 1) (Follicle-stimulating hormone primary response protein) (Interphase centromere complex protein 19) (Leucine-rich primary response protein 1)
[thiG] Thiazole synthase (EC 2.8.1.10)
[OGG1 YML060W YM9958.02] N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (AP lyase) (EC 4.2.99.18)]
[INCENP] Inner centromere protein
[Incenp] Inner centromere protein
[CAMTA3 CMTA3 SARD3 SR1 At2g22300 T26C19.4] Calmodulin-binding transcription activator 3 (AtCAMTA3) (Ethylene-induced calmodulin-binding protein 1) (EICBP1) (Ethylene-induced calmodulin-binding protein a) (EICBP.a) (Protein SAR-DEFICIENT 3) (Signal-responsive protein 1) (AtSR1)
[KIF2C KNSL6] Kinesin-like protein KIF2C (Kinesin-like protein 6) (Mitotic centromere-associated kinesin) (MCAK)
[CENPF] Centromere protein F (CENP-F) (AH antigen) (Kinetochore protein CENPF) (Mitosin)
[CENPW C6orf173 CUG2] Centromere protein W (CENP-W) (Cancer-up-regulated gene 2 protein)
[CENPM C22orf18 ICEN39 PANE1] Centromere protein M (CENP-M) (Interphase centromere complex protein 39) (Proliferation-associated nuclear element protein 1)
[incenp-a] Inner centromere protein A (XL-INCENP) (xINC) (xIncenp) (Mitotic phosphoprotein 130)
[HRT1 RBX1 ROC1 YOL133W] RING-box protein HRT1 (RING-box protein 1) (E3 ubiquitin-protein ligase complex SCF subunit HRT1) (High level expression reduces Ty3 transposition protein 1) (Regulator of cullins protein 1)
[LRWD1 CENP-33 ORCA] Leucine-rich repeat and WD repeat-containing protein 1 (Centromere protein 33) (CENP-33) (Origin recognition complex-associated protein) (ORC-associated protein) (ORCA)
[COB CYTB Q0105] Cytochrome b (Complex III subunit 3) (Complex III subunit CYTB) (Complex III subunit III) (Cytochrome b-c1 complex subunit 3) (Cytochrome b-c1 complex subunit CYTB) (Ubiquinol-cytochrome-c reductase complex cytochrome b subunit)
[KIF2C KNSL6] Kinesin-like protein KIF2C (Kinesin-like protein 6) (Mitotic centromere-associated kinesin) (MCAK)
[Zw10 mit(1)15 CG9900] Centromere/kinetochore protein zw10 (Mitotic 15 protein)
[CENPJ CPAP LAP LIP1] Centromere protein J (CENP-J) (Centrosomal P4.1-associated protein) (LAG-3-associated protein) (LYST-interacting protein 1)
[icpA Incenp DDB_G0267690] Inner centromere protein A (DdINCENP)
[mis15 pi022 SPBP22H7.09c] Inner kinetochore subunit mis15 (CENP-N homolog) (Constitutive centromere-associated network protein mis15) (Sim4 complex subunit mis15)
[MHF1 YOL086W-A] Inner kinetochore subunit MHF1 (CENP-S homolog) (Constitutive centromere-associated network protein MHF1) (MHF histone-fold complex subunit 1) (MPH1-associated histone-fold protein 1)
[CENPW] Centromere protein W (CENP-W)
[MCK1 YPK1 YNL307C N0392] Protein kinase MCK1 (EC 2.7.12.1) (Meiosis and centromere regulatory kinase)
[] Genome polyprotein [Cleaved into: P3; Protein 3AB; P1; Capsid protein VP0 (VP4-VP2); Capsid protein VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B) (Virion protein 2); Capsid protein VP3 (P1C) (Virion protein 3); Capsid protein VP1 (P1D) (Virion protein 1); P2; Protease 2A (P2A) (EC 3.4.22.29) (Picornain 2A) (Protein 2A); Protein 2B (P2B); Protein 2C (P2C) (EC 3.6.1.15); Protein 3A (P3A); Viral protein genome-linked (VPg) (Protein 3B) (P3B); Protein 3CD (EC 3.4.22.28); Protease 3C (P3C) (EC 3.4.22.28); RNA-directed RNA polymerase (RdRp) (EC 2.7.7.48) (3D polymerase) (3Dpol) (Protein 3D) (3D)]
[] Genome polyprotein [Cleaved into: P3; Protein 3AB; P2; P1; Capsid protein VP0 (VP4-VP2); Capsid protein VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B) (Virion protein 2); Capsid protein VP3 (P1C) (Virion protein 3); Capsid protein VP1 (P1D) (Virion protein 1); Protease 2A (P2A) (EC 3.4.22.29) (Picornain 2A) (Protein 2A); Protein 2B (P2B); Protein 2C (P2C) (EC 3.6.1.15); Protein 3A (P3A); Viral protein genome-linked (VPg) (Protein 3B) (P3B); Protein 3CD (EC 3.4.22.28); Protease 3C (P3C) (EC 3.4.22.28); RNA-directed RNA polymerase (RdRp) (EC 2.7.7.48) (3D polymerase) (3Dpol) (Protein 3D) (3D)]

Bibliography :
[16330709] A novel role for the CBF3 kinetochore-scaffold complex in regulating septin dynamics and cytokinesis.
[16212418] Insights from modeling the 3D structure of DNA-CBF3b complex.
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