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Chitinase-3-like protein 1 (BP40) (Mammary gland protein 40) (MGP-40)

 CH3L1_CAPHI             Reviewed;         383 AA.
Q8SPQ0;
23-NOV-2004, integrated into UniProtKB/Swiss-Prot.
01-JUN-2002, sequence version 1.
16-JAN-2019, entry version 93.
RecName: Full=Chitinase-3-like protein 1;
AltName: Full=BP40;
AltName: Full=Mammary gland protein 40;
Short=MGP-40;
Flags: Precursor;
Name=CHI3L1;
Capra hircus (Goat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia;
Pecora; Bovidae; Caprinae; Capra.
NCBI_TaxID=9925;
[1]
NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF N-TERMINUS, AND X-RAY
CRYSTALLOGRAPHY (2.9 ANGSTROMS) OF 22-383 IN COMPLEX WITH CHITIN
OLIGOMERS.
TISSUE=Mammary gland;
PubMed=12529329; DOI=10.1074/jbc.M208967200;
Mohanty A.K., Singh G., Paramasivam M., Saravanan K., Jabeen T.,
Sharma S., Yadav S., Kaur P., Kumar P., Srinivasan A., Singh T.P.;
"Crystal structure of a novel regulatory 40-kDa mammary gland protein
(MGP-40) secreted during involution.";
J. Biol. Chem. 278:14451-14460(2003).
[2]
X-RAY CRYSTALLOGRAPHY (2.09 ANGSTROMS) OF 22-381 IN COMPLEXES WITH
OLIGOSACCHARIDES, GLYCOSYLATION AT ASN-60, AND DISULFIDE BONDS.
PubMed=17372347; DOI=10.1107/S0907444907001631;
Kumar J., Ethayathulla A.S., Srivastava D.B., Singh N., Sharma S.,
Kaur P., Srinivasan A., Singh T.P.;
"Carbohydrate-binding properties of goat secretory glycoprotein (SPG-
40) and its functional implications: structures of the native
glycoprotein and its four complexes with chitin-like
oligosaccharides.";
Acta Crystallogr. D 63:437-446(2007).
-!- FUNCTION: Carbohydrate-binding lectin with a preference for
chitin. Has no chitinase activity. May play a role in tissue
remodeling and in the capacity of cells to respond to and cope
with changes in their environment. Plays a role in T-helper cell
type 2 (Th2) inflammatory response and IL-13-induced inflammation,
regulating allergen sensitization, inflammatory cell apoptosis,
dendritic cell accumulation and M2 macrophage differentiation.
Facilitates invasion of pathogenic enteric bacteria into colonic
mucosa and lymphoid organs. Mediates activation of AKT1 signaling
pathway and subsequent IL8 production in colonic epithelial cells.
Regulates antibacterial responses in lung by contributing to
macrophage bacterial killing, controlling bacterial dissemination
and augmenting host tolerance. Also regulates hyperoxia-induced
injury, inflammation and epithelial apoptosis in lung (By
similarity). {ECO:0000250}.
-!- SUBUNIT: Monomer. {ECO:0000269|PubMed:12529329}.
-!- SUBCELLULAR LOCATION: Secreted, extracellular space. Cytoplasm
{ECO:0000250}. Cytoplasm, perinuclear region {ECO:0000250}.
Endoplasmic reticulum {ECO:0000250}.
-!- SIMILARITY: Belongs to the glycosyl hydrolase 18 family.
{ECO:0000305}.
-!- CAUTION: Although it belongs to the glycosyl hydrolase 18 family,
Leu-140 is present instead of the conserved Glu which is an active
site residue. Therefore this protein lacks chitinase activity.
{ECO:0000305}.
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EMBL; AY081150; AAL87007.1; -; mRNA.
RefSeq; NP_001272618.1; NM_001285689.1.
UniGene; Chi.18273; -.
PDB; 1LJY; X-ray; 2.90 A; A=22-383.
PDB; 1SYT; X-ray; 2.60 A; A=22-381.
PDB; 1ZBV; X-ray; 3.21 A; A=22-381.
PDB; 1ZBW; X-ray; 2.80 A; A=22-381.
PDB; 1ZU8; X-ray; 3.05 A; A=22-383.
PDB; 2AOS; X-ray; 2.90 A; A=22-381.
PDB; 2B31; X-ray; 3.10 A; A=22-381.
PDB; 2DSZ; X-ray; 2.35 A; A=22-381.
PDB; 2DT0; X-ray; 2.45 A; A=22-381.
PDB; 2DT1; X-ray; 2.09 A; A=22-381.
PDB; 2DT2; X-ray; 2.90 A; A=22-381.
PDB; 2DT3; X-ray; 2.28 A; A=22-381.
PDB; 2O92; X-ray; 3.00 A; A=22-381.
PDB; 2OLH; X-ray; 2.78 A; A=22-381.
PDBsum; 1LJY; -.
PDBsum; 1SYT; -.
PDBsum; 1ZBV; -.
PDBsum; 1ZBW; -.
PDBsum; 1ZU8; -.
PDBsum; 2AOS; -.
PDBsum; 2B31; -.
PDBsum; 2DSZ; -.
PDBsum; 2DT0; -.
PDBsum; 2DT1; -.
PDBsum; 2DT2; -.
PDBsum; 2DT3; -.
PDBsum; 2O92; -.
PDBsum; 2OLH; -.
ProteinModelPortal; Q8SPQ0; -.
SMR; Q8SPQ0; -.
CAZy; GH18; Glycoside Hydrolase Family 18.
iPTMnet; Q8SPQ0; -.
PRIDE; Q8SPQ0; -.
GeneID; 100860825; -.
KEGG; chx:100860825; -.
CTD; 1116; -.
HOVERGEN; HBG011684; -.
KO; K17523; -.
OrthoDB; 1289629at2759; -.
EvolutionaryTrace; Q8SPQ0; -.
GO; GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO; GO:0005783; C:endoplasmic reticulum; ISS:UniProtKB.
GO; GO:0005615; C:extracellular space; ISS:UniProtKB.
GO; GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
GO; GO:0008061; F:chitin binding; ISS:UniProtKB.
GO; GO:0007250; P:activation of NF-kappaB-inducing kinase activity; ISS:UniProtKB.
GO; GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.
GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
GO; GO:0071356; P:cellular response to tumor necrosis factor; ISS:UniProtKB.
GO; GO:0006954; P:inflammatory response; ISS:UniProtKB.
GO; GO:0072606; P:interleukin-8 secretion; ISS:UniProtKB.
GO; GO:0030324; P:lung development; ISS:UniProtKB.
GO; GO:0045766; P:positive regulation of angiogenesis; ISS:UniProtKB.
GO; GO:0070374; P:positive regulation of ERK1 and ERK2 cascade; ISS:UniProtKB.
GO; GO:0010800; P:positive regulation of peptidyl-threonine phosphorylation; ISS:UniProtKB.
GO; GO:0051897; P:positive regulation of protein kinase B signaling; ISS:UniProtKB.
GO; GO:0070555; P:response to interleukin-1; ISS:UniProtKB.
GO; GO:0070741; P:response to interleukin-6; ISS:UniProtKB.
GO; GO:0009612; P:response to mechanical stimulus; ISS:UniProtKB.
GO; GO:0034612; P:response to tumor necrosis factor; ISS:UniProtKB.
Gene3D; 3.10.50.10; -; 1.
InterPro; IPR028538; CHI3L1.
InterPro; IPR011583; Chitinase_II.
InterPro; IPR029070; Chitinase_insertion_sf.
InterPro; IPR001223; Glyco_hydro18_cat.
InterPro; IPR017853; Glycoside_hydrolase_SF.
PANTHER; PTHR11177:SF202; PTHR11177:SF202; 1.
Pfam; PF00704; Glyco_hydro_18; 1.
SMART; SM00636; Glyco_18; 1.
SUPFAM; SSF51445; SSF51445; 1.
SUPFAM; SSF54556; SSF54556; 1.
1: Evidence at protein level;
3D-structure; Antimicrobial; Apoptosis; Cytoplasm;
Direct protein sequencing; Disulfide bond; Endoplasmic reticulum;
Glycoprotein; Inflammatory response; Lectin; Secreted; Signal.
SIGNAL 1 21 {ECO:0000269|PubMed:12529329}.
CHAIN 22 383 Chitinase-3-like protein 1.
/FTId=PRO_0000011964.
REGION 70 71 Chitooligosaccharide binding.
REGION 97 100 Chitooligosaccharide binding.
REGION 204 207 Chitooligosaccharide binding.
REGION 324 338 Important for AKT1 activation and IL8
production. {ECO:0000250}.
BINDING 141 141 Chitooligosaccharide.
BINDING 263 263 Chitooligosaccharide.
BINDING 352 352 Chitooligosaccharide.
CARBOHYD 60 60 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:17372347}.
CARBOHYD 367 367 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 26 51 {ECO:0000269|PubMed:17372347}.
DISULFID 300 364 {ECO:0000269|PubMed:17372347}.
STRAND 23 29 {ECO:0000244|PDB:2DT1}.
HELIX 30 34 {ECO:0000244|PDB:2DT1}.
HELIX 37 39 {ECO:0000244|PDB:2DT1}.
HELIX 43 45 {ECO:0000244|PDB:2DT1}.
TURN 48 50 {ECO:0000244|PDB:2DT1}.
STRAND 52 62 {ECO:0000244|PDB:2DT1}.
STRAND 65 67 {ECO:0000244|PDB:2DT1}.
HELIX 73 81 {ECO:0000244|PDB:2DT1}.
HELIX 82 85 {ECO:0000244|PDB:2DT1}.
STRAND 91 97 {ECO:0000244|PDB:2DT1}.
STRAND 99 101 {ECO:0000244|PDB:2DT3}.
HELIX 103 111 {ECO:0000244|PDB:2DT1}.
HELIX 113 130 {ECO:0000244|PDB:2DT1}.
STRAND 133 138 {ECO:0000244|PDB:2DT1}.
TURN 144 146 {ECO:0000244|PDB:2DT1}.
HELIX 147 164 {ECO:0000244|PDB:2DT1}.
HELIX 165 167 {ECO:0000244|PDB:2DT1}.
STRAND 173 178 {ECO:0000244|PDB:2DT1}.
HELIX 182 188 {ECO:0000244|PDB:2DT1}.
HELIX 191 195 {ECO:0000244|PDB:2DT1}.
STRAND 199 203 {ECO:0000244|PDB:2DT1}.
STRAND 213 215 {ECO:0000244|PDB:2DT1}.
STRAND 229 231 {ECO:0000244|PDB:2OLH}.
STRAND 234 236 {ECO:0000244|PDB:1LJY}.
HELIX 237 247 {ECO:0000244|PDB:2DT1}.
HELIX 251 253 {ECO:0000244|PDB:2DT1}.
STRAND 254 270 {ECO:0000244|PDB:2DT1}.
STRAND 277 281 {ECO:0000244|PDB:2DT1}.
TURN 286 288 {ECO:0000244|PDB:2DT1}.
STRAND 293 295 {ECO:0000244|PDB:2DT1}.
HELIX 296 302 {ECO:0000244|PDB:2DT1}.
TURN 303 305 {ECO:0000244|PDB:2DT1}.
STRAND 307 311 {ECO:0000244|PDB:2DT1}.
TURN 312 315 {ECO:0000244|PDB:2DT1}.
STRAND 316 321 {ECO:0000244|PDB:2DT1}.
STRAND 324 327 {ECO:0000244|PDB:2DT1}.
HELIX 331 343 {ECO:0000244|PDB:2DT1}.
STRAND 347 352 {ECO:0000244|PDB:2DT1}.
HELIX 354 356 {ECO:0000244|PDB:2DT1}.
STRAND 359 361 {ECO:0000244|PDB:2DT1}.
STRAND 363 367 {ECO:0000244|PDB:2DT1}.
HELIX 371 381 {ECO:0000244|PDB:2DT1}.
SEQUENCE 383 AA; 42894 MW; 17655ED4BE4E9F5F CRC64;
MGLRASGTGF VVLVLLQSCA AYKLICYYTS WSQYREGDGS CFPDAIDPFL CTHIIYSFAN
ISNNEIDTWE WNDVTLYDTL NTLKNRNPKL KTLLSVGGWN FGPERFSKIA SKTQSRRTFI
KSVPPFLRTH GFDGLDLAWL YPGRRDKRHL TGLVKEMKAE FAREAQAGTE RLLLSAAVSA
GKIAIDRGYD IAQISRHLDF ISLLTYDFHG AWRQTVGHHS PLFRGQEDAS SDRFSNADYA
VSYMLRLGAP ANKLVMGIPT FGRSFTLASS KTDVGAPISG PGIPGRFTKE KGILAYYEIC
DFLHGATTHR FRDQQVPYAT KGNQWVAYDD QESVKNKARY LKNRQLAGAM VWALDLDDFR
GTFCGQNLTF PLTSAVKDVL AEV


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Pathways :
WP1049: G Protein Signaling Pathways
WP1165: G Protein Signaling Pathways
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1493: Carbon assimilation C4 pathway
WP1502: Mitochondrial biogenesis
WP1531: Vitamin D synthesis
WP1566: Citrate cycle (TCA cycle)
WP1613: 1,4-Dichlorobenzene degradation
WP1616: ABC transporters
WP1624: Bacterial secretion system
WP1625: Base excision repair
WP1644: DNA replication
WP1650: Fluorobenzoate degradation
WP1654: gamma-Hexachlorocyclohexane degradation
WP1657: Glycerolipid metabolism
WP1659: Glycine, serine and threonine metabolism
WP1661: Glyoxylate and dicarboxylate metabolism
WP1663: Homologous recombination
WP1665: Limonene and pinene degradation
WP1672: Mismatch repair
WP1673: Naphthalene and anthracene degradation
WP1675: Nitrogen metabolism
WP1676: Non-homologous end-joining
WP1678: Nucleotide excision repair

Related Genes :
[Stat5a Mgf Mpf] Signal transducer and activator of transcription 5A (Mammary gland factor)
[gag-pro-pol] Gag-Pro-Pol polyprotein [Cleaved into: Matrix protein p10; Phosphorylated protein pp21; Protein p3; Protein p8; Protein n; Capsid protein p27; Nucleocapsid protein-dUTPase (NC-dUTPase) (EC 3.6.1.23); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[CHI3L1] Chitinase-3-like protein 1 (39 kDa synovial protein) (Cartilage glycoprotein 39) (CGP-39) (GP-39) (hCGP-39) (YKL-40)
[gag-pro] Gag-Pro polyprotein [Cleaved into: Matrix protein p10; Phosphorylated protein pp21; Protein p3; Protein p8; Protein n; Capsid protein p27; Nucleocapsid protein-dUTPase (NC-dUTPase) (EC 3.6.1.23); Protease (EC 3.4.23.-)]
[STAT5A MGF STAT5] Signal transducer and activator of transcription 5A (Mammary gland factor)
[SP Acp70A PAPB CG17673] Accessory gland-specific peptide 70A (Paragonial peptide B) (Sex peptide) (SP)
[Stat5a Mgf] Signal transducer and activator of transcription 5A (Mammary gland factor)
[gag-pro-pol] Gag-Pro-Pol polyprotein [Cleaved into: Matrix protein p10; Phosphorylated protein pp21; Protein p3; Protein p8; Protein n; Capsid protein p27; Nucleocapsid protein-dUTPase (NC-dUTPase) (EC 3.6.1.23); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[Chi3l1 Brp39 Chil1] Chitinase-3-like protein 1 (BRP39 protein) (Breast regression protein 39) (Cartilage glycoprotein 39) (CGP-39) (GP-39)
[DDR1 CAK EDDR1 NEP NTRK4 PTK3A RTK6 TRKE] Epithelial discoidin domain-containing receptor 1 (Epithelial discoidin domain receptor 1) (EC 2.7.10.1) (CD167 antigen-like family member A) (Cell adhesion kinase) (Discoidin receptor tyrosine kinase) (HGK2) (Mammary carcinoma kinase 10) (MCK-10) (Protein-tyrosine kinase 3A) (Protein-tyrosine kinase RTK-6) (TRK E) (Tyrosine kinase DDR) (Tyrosine-protein kinase CAK) (CD antigen CD167a)
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[gag-pro] Gag-Pro polyprotein [Cleaved into: Matrix protein p10; Phosphorylated protein pp21; Protein p3; Protein p8; Protein n; Capsid protein p27; Nucleocapsid protein-dUTPase (NC-dUTPase) (EC 3.6.1.23); Protease (EC 3.4.23.-)]
[Eif3e Eif3s6 Int6] Eukaryotic translation initiation factor 3 subunit E (eIF3e) (Eukaryotic translation initiation factor 3 subunit 6) (MMTV integration site 6) (Mammary tumor-associated protein INT-6) (Viral integration site protein INT-6) (eIF-3 p48)
[App] Amyloid-beta A4 protein (ABPP) (APP) (Alzheimer disease amyloid A4 protein homolog) (Amyloid precursor protein) (Amyloid-beta precursor protein) (Amyloidogenic glycoprotein) (AG) [Cleaved into: N-APP; Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99 (APP-C99) (Beta-secretase C-terminal fragment) (Beta-CTF); Amyloid-beta protein 42 (Abeta42) (Beta-APP42); Amyloid-beta protein 40 (Abeta40) (Beta-APP40); C83 (Alpha-secretase C-terminal fragment) (Alpha-CTF); P3(42); P3(40); C80; Gamma-secretase C-terminal fragment 59 (APP-C59) (Amyloid intracellular domain 59) (AID(59)) (Gamma-CTF(59)); Gamma-secretase C-terminal fragment 57 (APP-C57) (Amyloid intracellular domain 57) (AID(57)) (Gamma-CTF(57)); Gamma-secretase C-terminal fragment 50 (Amyloid intracellular domain 50) (AID(50)) (Gamma-CTF(50)); C31]
[dim-5 29E8.110 NCU04402] Histone-lysine N-methyltransferase, H3 lysine-9 specific dim-5 (EC 2.1.1.43) (Histone H3-K9 methyltransferase dim-5) (H3-K9-HMTase dim-5) (HKMT)
[gag] Gag polyprotein [Cleaved into: Matrix protein p10; Phosphorylated protein pp21; Protein p3; Protein p8; Protein n; Capsid protein p27; Nucleocapsid protein p14]
[Rpsa Lamr1 P40-8] 40S ribosomal protein SA (37 kDa laminin receptor precursor) (37LRP) (37 kDa oncofetal antigen) (37/67 kDa laminin receptor) (LRP/LR) (67 kDa laminin receptor) (67LR) (Laminin receptor 1) (LamR) (Laminin-binding protein precursor p40) (LBP/p40) (OFA/iLRP)
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[RNF40 BRE1B KIAA0661] E3 ubiquitin-protein ligase BRE1B (BRE1-B) (EC 2.3.2.27) (95 kDa retinoblastoma-associated protein) (RBP95) (RING finger protein 40) (RING-type E3 ubiquitin transferase BRE1B)
[Exosc3 Rrp40] Exosome complex component RRP40 (EC 3.1.13.-) (Exosome component 3) (Ribosomal RNA-processing protein 40)
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[nef] Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
[nef] Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[nef] Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[nef] Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]

Bibliography :
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