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Cleavage and polyadenylation specificity factor subunit 2 (Cleavage and polyadenylation specificity factor 100 kDa subunit) (AtCPSF100) (CPSF 100 kDa subunit) (Protein EMBRYO DEFECTIVE 1265) (Protein ENHANCED SILENCING PHENOTYPE 5)

 CPSF2_ARATH             Reviewed;         739 AA.
Q9LKF9; Q9FF92;
18-OCT-2001, integrated into UniProtKB/Swiss-Prot.
18-OCT-2001, sequence version 2.
13-FEB-2019, entry version 137.
RecName: Full=Cleavage and polyadenylation specificity factor subunit 2;
AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit;
Short=AtCPSF100;
Short=CPSF 100 kDa subunit;
AltName: Full=Protein EMBRYO DEFECTIVE 1265;
AltName: Full=Protein ENHANCED SILENCING PHENOTYPE 5 {ECO:0000303|PubMed:17008405};
Name=CPSF100; Synonyms=EMB1265, ESP5 {ECO:0000303|PubMed:17008405};
OrderedLocusNames=At5g23880 {ECO:0000312|Araport:AT5G23880};
ORFNames=MRO11.8 {ECO:0000312|EMBL:BAB10061.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=12602868; DOI=10.1023/A:1022035219500;
Elliott B.J., Dattaroy T., Meeks-Midkiff L.R., Forbes K.P., Hunt A.G.;
"An interaction between an Arabidopsis poly(A) polymerase and a
homologue of the 100 kDa subunit of CPSF.";
Plant Mol. Biol. 51:373-384(2003).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9330910; DOI=10.1093/dnares/4.3.215;
Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
Miyajima N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
features of the 1.6 Mb regions covered by twenty physically assigned
P1 clones.";
DNA Res. 4:215-230(1997).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
FUNCTION, DISRUPTION PHENOTYPE, AND SUBUNIT.
PubMed=17008405; DOI=10.1073/pnas.0606536103;
Herr A.J., Molnar A., Jones A., Baulcombe D.C.;
"Defective RNA processing enhances RNA silencing and influences
flowering of Arabidopsis.";
Proc. Natl. Acad. Sci. U.S.A. 103:14994-15001(2006).
[6]
INTERACTION WITH CPSF160; PAPS2; CSTF50; FY AND CPSF30, GENE FAMILY,
AND NOMENCLATURE.
PubMed=18479511; DOI=10.1186/1471-2164-9-220;
Hunt A.G., Xu R., Addepalli B., Rao S., Forbes K.P., Meeks L.R.,
Xing D., Mo M., Zhao H., Bandyopadhyay A., Dampanaboina L., Marion A.,
Von Lanken C., Li Q.Q.;
"Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of
protein-protein interactions and gene expression profiling.";
BMC Genomics 9:220-220(2008).
[7]
SUBCELLULAR LOCATION, AND INTERACTION WITH CPSF30.
PubMed=19573236; DOI=10.1186/1471-2121-10-51;
Rao S., Dinkins R.D., Hunt A.G.;
"Distinctive interactions of the Arabidopsis homolog of the 30 kD
subunit of the cleavage and polyadenylation specificity factor
(AtCPSF30) with other polyadenylation factor subunits.";
BMC Cell Biol. 10:51-51(2009).
[8]
COMPONENT OF CPSF COMPLEX.
PubMed=19748916; DOI=10.1104/pp.109.142729;
Zhao H., Xing D., Li Q.Q.;
"Unique features of plant cleavage and polyadenylation specificity
factor revealed by proteomic studies.";
Plant Physiol. 151:1546-1556(2009).
[9]
INTERACTION WITH FY.
PubMed=19439664; DOI=10.1073/pnas.0903444106;
Manzano D., Marquardt S., Jones A.M., Baurle I., Liu F., Dean C.;
"Altered interactions within FY/AtCPSF complexes required for
Arabidopsis FCA-mediated chromatin silencing.";
Proc. Natl. Acad. Sci. U.S.A. 106:8772-8777(2009).
-!- FUNCTION: CPSF plays a key role in pre-mRNA 3'-end formation,
recognizing the AAUAAA signal sequence and interacting with
poly(A)polymerase and other factors to bring about cleavage and
poly(A) addition (By similarity). Required for antisense-RNA-
mediated gene silencing (PubMed:17008405).
{ECO:0000250|UniProtKB:O17403, ECO:0000269|PubMed:17008405}.
-!- SUBUNIT: Component of the CPSF complex, at least composed of
CPSF160, CPSF100, CPSF73-I, CPSF73-II, CPSF30, FY and FIPS5. Forms
a complex with cleavage and polyadenylation specificity factor
(CPSF) subunits FY, PAPS2, CSTF50, CPSF30, CPSF73-I, CPSF73-II and
CPSF160. {ECO:0000269|PubMed:17008405,
ECO:0000269|PubMed:18479511, ECO:0000269|PubMed:19439664,
ECO:0000269|PubMed:19573236}.
-!- INTERACTION:
Q9FGR0:CPSF160; NbExp=4; IntAct=EBI-1775444, EBI-1775436;
A9LNK9:CPSF30; NbExp=3; IntAct=EBI-1775444, EBI-962511;
Q9C952:CPSF73-I; NbExp=4; IntAct=EBI-1775444, EBI-1775464;
Q8GUU3:CPSF73-II; NbExp=3; IntAct=EBI-1775444, EBI-1775477;
Q6NLV4:FY; NbExp=3; IntAct=EBI-1775444, EBI-1632908;
O82312:PAPS2; NbExp=5; IntAct=EBI-1775444, EBI-1775513;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. Cytoplasm
{ECO:0000269|PubMed:19573236}. Note=Localized in the cytoplasm
when associated with CPSF30. {ECO:0000269|PubMed:19573236}.
-!- DISRUPTION PHENOTYPE: Impaired antisense-RNA-mediated gene
silencing. Early flowering. {ECO:0000269|PubMed:17008405}.
-!- SIMILARITY: Belongs to the metallo-beta-lactamase superfamily.
RNA-metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1
subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AF283277; AAF82809.1; -; mRNA.
EMBL; AB005244; BAB10061.1; -; Genomic_DNA.
EMBL; CP002688; AED93228.1; -; Genomic_DNA.
EMBL; AY034982; AAK59487.1; -; mRNA.
EMBL; BT004374; AAO42368.1; -; mRNA.
RefSeq; NP_197776.1; NM_122293.4.
UniGene; At.25191; -.
ProteinModelPortal; Q9LKF9; -.
BioGrid; 17728; 12.
DIP; DIP-40385N; -.
IntAct; Q9LKF9; 9.
STRING; 3702.AT5G23880.1; -.
iPTMnet; Q9LKF9; -.
PaxDb; Q9LKF9; -.
PRIDE; Q9LKF9; -.
EnsemblPlants; AT5G23880.1; AT5G23880.1; AT5G23880.
GeneID; 832453; -.
Gramene; AT5G23880.1; AT5G23880.1; AT5G23880.
KEGG; ath:AT5G23880; -.
Araport; AT5G23880; -.
TAIR; locus:2172843; AT5G23880.
eggNOG; KOG1135; Eukaryota.
eggNOG; COG1236; LUCA.
HOGENOM; HOG000264343; -.
InParanoid; Q9LKF9; -.
KO; K14402; -.
OMA; WKNKESG; -.
OrthoDB; 1314980at2759; -.
PhylomeDB; Q9LKF9; -.
Reactome; R-ATH-72163; mRNA Splicing - Major Pathway.
Reactome; R-ATH-72187; mRNA 3'-end processing.
Reactome; R-ATH-77595; Processing of Intronless Pre-mRNAs.
PRO; PR:Q9LKF9; -.
Proteomes; UP000006548; Chromosome 5.
Genevisible; Q9LKF9; AT.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:TAIR.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0009506; C:plasmodesma; IDA:TAIR.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0006379; P:mRNA cleavage; ISS:TAIR.
GO; GO:0006378; P:mRNA polyadenylation; ISS:TAIR.
GO; GO:0035194; P:posttranscriptional gene silencing by RNA; IMP:TAIR.
CDD; cd16293; CPSF2-like_MBL-fold; 1.
Gene3D; 3.60.15.10; -; 1.
InterPro; IPR022712; Beta_Casp.
InterPro; IPR027075; CPSF2.
InterPro; IPR025069; Cpsf2_C.
InterPro; IPR035639; CPSF2_MBL.
InterPro; IPR001279; Metallo-B-lactamas.
InterPro; IPR036866; RibonucZ/Hydroxyglut_hydro.
InterPro; IPR011108; RMMBL.
PANTHER; PTHR11203:SF5; PTHR11203:SF5; 1.
Pfam; PF10996; Beta-Casp; 1.
Pfam; PF13299; CPSF100_C; 1.
Pfam; PF16661; Lactamase_B_6; 1.
Pfam; PF07521; RMMBL; 1.
SMART; SM01027; Beta-Casp; 1.
SMART; SM00849; Lactamase_B; 1.
SUPFAM; SSF56281; SSF56281; 1.
1: Evidence at protein level;
Complete proteome; Cytoplasm; mRNA processing; Nucleus;
Reference proteome; RNA-binding.
CHAIN 1 739 Cleavage and polyadenylation specificity
factor subunit 2.
/FTId=PRO_0000074398.
CONFLICT 49 49 S -> P (in Ref. 1; AAF82809).
{ECO:0000305}.
CONFLICT 441 441 I -> V (in Ref. 1; AAF82809).
{ECO:0000305}.
SEQUENCE 739 AA; 82139 MW; 9ABFC916712AD464 CRC64;
MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL
SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD QFLSRKQVSD FDLFTLDDID
SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE
RHLNGTVLQS FVRPAVLITD AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA
GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG
TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL KREEALRASL VKEEETKASH
GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG
EIINPDDYVI KDEDMDRGAM HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV
KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV
LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV GPTGQKGGAS GPQQILIEGP
LCEDYYKIRD YLYSQFYLL


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Kits Elisa; taq POLYMERASE

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Pathways :
WP1566: Citrate cycle (TCA cycle)
WP1644: DNA replication
WP1663: Homologous recombination
WP1672: Mismatch repair
WP1693: Purine metabolism
WP1694: Pyrimidine metabolism
WP2272: Pathogenic Escherichia coli infection
WP2292: Chemokine signaling pathway
WP1614: 1- and 2-Methylnaphthalene degradation
WP1626: Benzoate degradation via CoA ligation
WP1634: Butanoate metabolism
WP1655: Geraniol degradation
WP1671: Methane metabolism
WP1680: Oxidative phosphorylation
WP1711: Trinitrotoluene degradation
WP1718: Vitamin B6 metabolism
WP1046: Signaling of Hepatocyte Growth Factor Receptor
WP1049: G Protein Signaling Pathways
WP1162: Signaling of Hepatocyte Growth Factor Receptor
WP1165: G Protein Signaling Pathways
WP1206: Signaling of Hepatocyte Growth Factor Receptor
WP1235: Signaling of Hepatocyte Growth Factor Receptor
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1493: Carbon assimilation C4 pathway

Related Genes :
[NUDT21 CFIM25 CPSF25 CPSF5] Cleavage and polyadenylation specificity factor subunit 5 (Cleavage and polyadenylation specificity factor 25 kDa subunit) (CPSF 25 kDa subunit) (Cleavage factor Im complex 25 kDa subunit) (CFIm25) (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) (Nudix hydrolase 21) (Pre-mRNA cleavage factor Im 68 kDa subunit)
[CPSF6 CFIM68] Cleavage and polyadenylation specificity factor subunit 6 (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Cleavage factor Im complex 68 kDa subunit) (CFIm68) (Pre-mRNA cleavage factor Im 68 kDa subunit) (Protein HPBRII-4/7)
[CPSF7] Cleavage and polyadenylation specificity factor subunit 7 (Cleavage and polyadenylation specificity factor 59 kDa subunit) (CPSF 59 kDa subunit) (Cleavage factor Im complex 59 kDa subunit) (CFIm59) (Pre-mRNA cleavage factor Im 59 kDa subunit)
[CPSF30 OXT6 At1g30460 F26G16.5 F26G16.6] 30-kDa cleavage and polyadenylation specificity factor 30 (EC 3.1.21.-) (Protein OXIDATIVE STRESS TOLERANT 6) (Zinc finger CCCH domain-containing protein 11) (AtC3H11)
[Nudt21 Cpsf5] Cleavage and polyadenylation specificity factor subunit 5 (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) (Nudix hydrolase 21)
[Clp CPSF30 Ssb-c6a CG3642] Cleavage and polyadenylation specificity factor subunit 4 (EC 3.1.-.-) (Cleavage and polyadenylation specificity factor 30 kDa subunit) (Protein clipper)
[Nudt21 Cpsf5] Cleavage and polyadenylation specificity factor subunit 5 (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) (Nudix hydrolase 21)
[NUDT21 CPSF5] Cleavage and polyadenylation specificity factor subunit 5 (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) (Nudix hydrolase 21)
[Cpsf6] Cleavage and polyadenylation specificity factor subunit 6
[NUDT21 CPSF5] Cleavage and polyadenylation specificity factor subunit 5 (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21)
[CPSF73-I At1g61010 T7P1.15] Cleavage and polyadenylation specificity factor subunit 3-I (EC 3.1.27.-) (Cleavage and polyadenylation specificity factor 73 kDa subunit I) (AtCPSF73-I) (CPSF 73 kDa subunit I)
[CFIS1 CFIM25 At4g29820 F27B13.60] Pre-mRNA cleavage factor Im 25 kDa subunit 1 (Cleavage and polyadenylation specificity factor 25 kDa subunit) (AtCFI-25) (CFIm-25) (CPSF 25 kDa subunit) (Cleavage and polyadenylation specificity factor subunit 25)
[LAMC2 LAMB2T LAMNB2] Laminin subunit gamma-2 (Cell-scattering factor 140 kDa subunit) (CSF 140 kDa subunit) (Epiligrin subunit gamma) (Kalinin subunit gamma) (Kalinin/nicein/epiligrin 100 kDa subunit) (Ladsin 140 kDa subunit) (Laminin B2t chain) (Laminin-5 subunit gamma) (Large adhesive scatter factor 140 kDa subunit) (Nicein subunit gamma)
[KMT2A ALL1 CXXC7 HRX HTRX MLL MLL1 TRX1] Histone-lysine N-methyltransferase 2A (Lysine N-methyltransferase 2A) (EC 2.1.1.43) (ALL-1) (CXXC-type zinc finger protein 7) (Myeloid/lymphoid or mixed-lineage leukemia) (Myeloid/lymphoid or mixed-lineage leukemia protein 1) (Trithorax-like protein) (Zinc finger protein HRX) [Cleaved into: MLL cleavage product N320 (N-terminal cleavage product of 320 kDa) (p320); MLL cleavage product C180 (C-terminal cleavage product of 180 kDa) (p180)]
[PCFS4 At4g04885 T4B21.1] Polyadenylation and cleavage factor homolog 4
[NFKB2 LYT10] Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor KBF2) (H2TF1) (Lymphocyte translocation chromosome 10 protein) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2) (Oncogene Lyt-10) (Lyt10) [Cleaved into: Nuclear factor NF-kappa-B p52 subunit]
[XRCC6 G22P1] X-ray repair cross-complementing protein 6 (EC 3.6.4.-) (EC 4.2.99.-) (5'-deoxyribose-5-phosphate lyase Ku70) (5'-dRP lyase Ku70) (70 kDa subunit of Ku antigen) (ATP-dependent DNA helicase 2 subunit 1) (ATP-dependent DNA helicase II 70 kDa subunit) (CTC box-binding factor 75 kDa subunit) (CTC75) (CTCBF) (DNA repair protein XRCC6) (Lupus Ku autoantigen protein p70) (Ku70) (Thyroid-lupus autoantigen) (TLAA) (X-ray repair complementing defective repair in Chinese hamster cells 6)
[MED24 ARC100 CRSP4 DRIP100 KIAA0130 THRAP4 TRAP100] Mediator of RNA polymerase II transcription subunit 24 (Activator-recruited cofactor 100 kDa component) (ARC100) (Cofactor required for Sp1 transcriptional activation subunit 4) (CRSP complex subunit 4) (Mediator complex subunit 24) (Thyroid hormone receptor-associated protein 4) (Thyroid hormone receptor-associated protein complex 100 kDa component) (Trap100) (hTRAP100) (Vitamin D3 receptor-interacting protein complex 100 kDa component) (DRIP100)
[cpeb1-a cpeb] Cytoplasmic polyadenylation element-binding protein 1-A (CPE-BP1-A) (CPE-binding protein 1-A) (CPEB-1-A) (58 kDa CPE-binding protein)
[AGRN AGRIN] Agrin [Cleaved into: Agrin N-terminal 110 kDa subunit; Agrin C-terminal 110 kDa subunit; Agrin C-terminal 90 kDa fragment (C90); Agrin C-terminal 22 kDa fragment (C22)]
[SUPT5H SPT5 SPT5H] Transcription elongation factor SPT5 (hSPT5) (DRB sensitivity-inducing factor 160 kDa subunit) (DSIF p160) (DRB sensitivity-inducing factor large subunit) (DSIF large subunit) (Tat-cotransactivator 1 protein) (Tat-CT1 protein)
[CLP1 HEAB] Polyribonucleotide 5'-hydroxyl-kinase Clp1 (EC 2.7.1.78) (Polyadenylation factor Clp1) (Polynucleotide kinase Clp1) (Pre-mRNA cleavage complex II protein Clp1)
[Cpsf7] Cleavage and polyadenylation specificity factor subunit 7
[CPSF6] Cleavage and polyadenylation specificity factor subunit 6
[CPSF6] Cleavage and polyadenylation specificity factor subunit 6
[HABP2 HGFAL PHBP] Hyaluronan-binding protein 2 (EC 3.4.21.-) (Factor VII-activating protease) (Factor seven-activating protease) (FSAP) (Hepatocyte growth factor activator-like protein) (Plasma hyaluronan-binding protein) [Cleaved into: Hyaluronan-binding protein 2 50 kDa heavy chain; Hyaluronan-binding protein 2 50 kDa heavy chain alternate form; Hyaluronan-binding protein 2 27 kDa light chain; Hyaluronan-binding protein 2 27 kDa light chain alternate form]
[Agrn Agrin] Agrin [Cleaved into: Agrin N-terminal 110 kDa subunit; Agrin C-terminal 110 kDa subunit; Agrin C-terminal 90 kDa fragment (C90); Agrin C-terminal 22 kDa fragment (C22)]
[TIC100 EMB1211 At5g22640 MDJ22.6] Protein TIC 100 (Protein EMBRYO DEFECTIVE 1211) (Translocon at the inner envelope membrane of chloroplasts 100) (AtTIC100)
[U2AF1 U2AF35 U2AFBP FP793] Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 small nuclear RNA auxiliary factor 1) (U2 snRNP auxiliary factor small subunit)
[SP100] Nuclear autoantigen Sp-100 (Nuclear dot-associated Sp100 protein) (Speckled 100 kDa)

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