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Cyclic AMP-dependent transcription factor ATF-5 (cAMP-dependent transcription factor ATF-5) (Activating transcription factor 5-alpha/beta) (BZIP protein ATF7) (NAP1) (NRIF3-associated protein) (Transcription factor ATFx) (Transcription factor-like protein ODA-10)

 ATF5_MOUSE              Reviewed;         283 AA.
O70191; Q58E51; Q99NH6;
21-FEB-2001, integrated into UniProtKB/Swiss-Prot.
21-FEB-2001, sequence version 2.
13-FEB-2019, entry version 146.
RecName: Full=Cyclic AMP-dependent transcription factor ATF-5;
Short=cAMP-dependent transcription factor ATF-5;
AltName: Full=Activating transcription factor 5-alpha/beta;
AltName: Full=BZIP protein ATF7;
AltName: Full=NAP1;
AltName: Full=NRIF3-associated protein;
AltName: Full=Transcription factor ATFx;
AltName: Full=Transcription factor-like protein ODA-10;
Name=Atf5; Synonyms=Atfx, Nap1;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND DEVELOPMENTAL
STAGE.
TISSUE=Brain;
PubMed=12213205; DOI=10.1006/geno.2002.6838;
Hansen M.B., Mitchelmore C., Kjaerulff K.M., Rasmussen T.E.,
Pedersen K.M., Jensen N.A.;
"Mouse Atf5: molecular cloning of two novel mRNAs, genomic
organization, and odorant sensory neuron localization.";
Genomics 80:344-350(2002).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=11986327; DOI=10.1074/jbc.M202833200;
Angata T., Kerr S.C., Greaves D.R., Varki N.M., Crocker P.R.,
Varki A.;
"Cloning and characterization of human Siglec-11. A recently evolved
signaling molecule that can interact with SHP-1 and SHP-2 and is
expressed by tissue macrophages, including brain microglia.";
J. Biol. Chem. 277:24466-24474(2002).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=C57BL/6J;
Li D., Samuels H.H.;
"The NRIF3-associated protein NAP1.";
Submitted (OCT-2000) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=FVB/N; TISSUE=Liver, and Mammary gland;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 67-283, DNA-BINDING, TISSUE SPECIFICITY,
AND INTERACTION WITH PTP4A1.
TISSUE=Adipocyte;
PubMed=11278933; DOI=10.1074/jbc.M011562200;
Peters C.S., Liang X., Li S., Kannan S., Peng Y., Taub R.,
Diamond R.H.;
"ATF-7, a novel bZIP protein, interacts with the PRL-1 protein-
tyrosine phosphatase.";
J. Biol. Chem. 276:13718-13726(2001).
[6]
NUCLEOTIDE SEQUENCE [MRNA] OF 200-283.
PubMed=1371974; DOI=10.1016/0014-5793(92)80094-W;
Nishizawa M., Nagata S.;
"cDNA clones encoding leucine-zipper proteins which interact with G-
CSF gene promoter element 1-binding protein.";
FEBS Lett. 299:36-38(1992).
[7]
INDUCTION, AND FUNCTION.
PubMed=12130540; DOI=10.1101/gad.992202;
Persengiev S.P., Devireddy L.R., Green M.R.;
"Inhibition of apoptosis by ATFx: a novel role for a member of the
ATF/CREB family of mammalian bZIP transcription factors.";
Genes Dev. 16:1806-1814(2002).
[8]
INDUCTION.
PubMed=21768648; DOI=10.1074/jbc.M111.258970;
Koyanagi S., Hamdan A.M., Horiguchi M., Kusunose N., Okamoto A.,
Matsunaga N., Ohdo S.;
"cAMP-response element (CRE)-mediated transcription by activating
transcription factor-4 (ATF4) is essential for circadian expression of
the Period2 gene.";
J. Biol. Chem. 286:32416-32423(2011).
[9]
FUNCTION, DEVELOPMENTAL STAGE, AND SUBCELLULAR LOCATION.
PubMed=22095825; DOI=10.1002/dneu.20979;
Lee H.Y., Angelastro J.M., Kenney A.M., Mason C.A., Greene L.A.;
"Reciprocal actions of ATF5 and Shh in proliferation of cerebellar
granule neuron progenitor cells.";
Dev. Neurobiol. 72:789-804(2012).
[10]
FUNCTION, DEVELOPMENTAL STAGE, DISRUPTION PHENOTYPE, TISSUE
SPECIFICITY, AND INDUCTION BY RETINOIC ACID.
PubMed=23090999; DOI=10.1073/pnas.1210479109;
Wang S.Z., Ou J., Zhu L.J., Green M.R.;
"Transcription factor ATF5 is required for terminal differentiation
and survival of olfactory sensory neurons.";
Proc. Natl. Acad. Sci. U.S.A. 109:18589-18594(2012).
[11]
FUNCTION, INTERACTION WITH CEBPB AND EP300, ACETYLATION AT LYS-29, AND
MUTAGENESIS OF LYS-29.
PubMed=24216764; DOI=10.1128/MCB.00956-13;
Zhao Y., Zhang Y.D., Zhang Y.Y., Qian S.W., Zhang Z.C., Li S.F.,
Guo L., Liu Y., Wen B., Lei Q.Y., Tang Q.Q., Li X.;
"p300-dependent acetylation of activating transcription factor 5
enhances C/EBPbeta transactivation of C/EBPalpha during 3T3-L1
differentiation.";
Mol. Cell. Biol. 34:315-324(2014).
-!- FUNCTION: Transcription factor that either stimulates or represses
gene transcription through binding of different DNA regulatory
elements such as cAMP response element (CRE) (consensus: 5'-
GTGACGT[AC][AG]-3'), ATF5-specific response element (ARE)
(consensus: 5'-C[CT]TCT[CT]CCTT[AT]-3') but also the amino acid
response element (AARE), present in many viral and cellular
promoters. Critically involved, often in a cell type-dependent
manner, in cell survival, proliferation, and differentiation. Its
transcriptional activity is enhanced by CCND3 and slightly
inhibited by CDK4 (By similarity). Important regulator of the
cerebral cortex formation, functions in cerebral cortical
neuroprogenitor cells to maintain proliferation and to block
differentiation into neurons. Must be down-regulated in order for
such cells to exit the cycle and differentiate. Participates in
the pathways by which SHH promotes cerebellar granule neuron
progenitor cells proliferation (PubMed:22095825). Critical for
survival of mature olfactory sensory neurons (OSN), directs
expression of OSN-specific genes (PubMed:23090999). May be
involved in osteogenic differentiation. Promotes cell
proliferation and survival by inducing the expression of EGR1
sinergistically with ELK1. Once acetylated by EP300, binds to ARE
sequences on target genes promoters, such as BCL2 and EGR1 (By
similarity). Plays an anti-apoptotic role through the
transcriptional regulation of BCL2, this function seems to be cell
type-dependent (By similarity) (PubMed:12130540). Cooperates with
NR1I3/CAR in the transcriptional activation of CYP2B6 in liver. In
hepatic cells, represses CRE-dependent transcription and inhibits
proliferation by blocking at G2/M phase. May act as a negative
regulator of IL1B transduction pathway in liver. Upon IL1B
stimulus, cooperates with NLK to activate the transactivation
activity of C/EBP subfamily members. Besides its function of
transcription factor, acts as a cofactor of CEBPB to activate
CEBPA and promote adipocyte differentiation. Regulates centrosome
dynamics in a cell-cycle- and centriole-age-dependent manner.
Forms 9-foci symmetrical ring scaffold around the mother centriole
to control centrosome function and the interaction between
centrioles and pericentriolar material (By similarity).
{ECO:0000250|UniProtKB:Q6P788, ECO:0000250|UniProtKB:Q9Y2D1,
ECO:0000269|PubMed:12130540, ECO:0000269|PubMed:22095825,
ECO:0000269|PubMed:23090999}.
-!- SUBUNIT: Binds DNA as a dimer. Interacts with PTP4A1/PRL-1 (By
similarity). Interacts with CCND3, but not with CCND1 or CCND2.
Interacts with HSPA1A or HSPA1B; the interaction protects ATF5
from degradation via proteasome-dependent and caspase-dependent
processes. Interacts (via C-terminal region) with NPM1 (via C-
terminal region); the interaction leads to loss of association
between HSPA1A or HSPA1B and ATF5 and promotes ATF5 degradation
via proteasome-dependent and caspase-dependent processes.
Interacts with NLK; the interaction stabilizes ATF5 at the protein
level in a kinase-independent manner. Interacts with alpha-
tubulin, gamma-tubulin members TUBGCP2 and TUBGCP4, PCNT; the
ATF5:PCNT:polyglutamylated tubulin (PGT) tripartite unites the
mother centriole and the pericentriolar material (PCM) in the
centrosome (By similarity). Interacts with CEBPB and EP300; EP300
is required for ATF5 and CEBPB interaction and DNA binding
(PubMed:24216764). {ECO:0000250|UniProtKB:Q9Y2D1,
ECO:0000269|PubMed:11278933, ECO:0000269|PubMed:24216764}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250|UniProtKB:Q9Y2D1}.
Nucleus {ECO:0000269|PubMed:22095825}. Cytoplasm, cytoskeleton,
microtubule organizing center, centrosome
{ECO:0000250|UniProtKB:Q9Y2D1}. Note=Actively transported to the
centrosome and accumulated in the pericentriolar material (PCM)
during G1 to M phase via a microtubule-dependent mechanism. During
late telophase and cytokinesis, translocates from the centrosome
to the midbody. {ECO:0000250|UniProtKB:Q9Y2D1}.
-!- TISSUE SPECIFICITY: Highly expressed in liver and at lower levels
in heart, brain, lung, kidney, adipose tissue, and skeletal
muscle. Expressed in some immature and in all mature olfactory
sensory neurons (at protein level) (PubMed:23090999).
{ECO:0000269|PubMed:11278933, ECO:0000269|PubMed:12213205,
ECO:0000269|PubMed:23090999}.
-!- DEVELOPMENTAL STAGE: Expressed in sensory neurons during embryonic
development of the olfactory epithelium and vomeronasal organ.
From, at least, 11.5 dpc through adulthood, expressed in the
olfactory system. At 14.5 dpc, highly expressed in the olfactory
epithelia, vomeronasal organ, the Grueneberg ganglion, the septal
organ and the olfactory bulb (PubMed:23090999). At 14.5 dpc,
expressed within germinal regions in the ventricular zone of the
brain, the rhombic lip and the nascent external granule layer
(EGL). At 16.5 dpc expression at the EGL is more intense and
extensive. From P1 to P15, expressed in cerebellar granule neuron
progenitor cells (CGNPs) of the EGL (PubMed:22095825).
{ECO:0000269|PubMed:12213205, ECO:0000269|PubMed:22095825,
ECO:0000269|PubMed:23090999}.
-!- INDUCTION: Expressed in a circadian manner in the liver. Down-
regulated by pro-apoptotic stimuli such IL3-deprivation that
induce LCN2 expression (PubMed:12130540). In neural stem cells the
expression is induced by retinoic acid (PubMed:23090999).
{ECO:0000269|PubMed:12130540, ECO:0000269|PubMed:21768648,
ECO:0000269|PubMed:23090999}.
-!- PTM: Acetylated at Lys-29 by EP300, the acetylation enhances the
interaction with CEBPB, DNA-binding and transactivation activity.
{ECO:0000269|PubMed:24216764}.
-!- PTM: Ubiquitinated by CDC34 and UBE2B in order to be degraded by
the proteasome. Cisplatin inhibits ubiquitination and proteasome-
mediated degradation by inhibiting the interaction with CDC34.
Ubiquitination and degradation by the proteasome are inhibited by
NLK in a kinase-independent manner.
{ECO:0000250|UniProtKB:Q9Y2D1}.
-!- PTM: Phosphorylated by NLK, probably at Ser-92 and Ser-126.
{ECO:0000250|UniProtKB:Q9Y2D1}.
-!- DISRUPTION PHENOTYPE: The majority of pups die within 48h after
birth even if there is no major phenotypic differences at birth.
Mice reveal a lack of milk in their stomach and show a dramatic
loss of mature olfactory sensory neurons.
{ECO:0000269|PubMed:23090999}.
-!- SIMILARITY: Belongs to the bZIP family. {ECO:0000305}.
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EMBL; AF375475; AAK54640.1; -; mRNA.
EMBL; AF375476; AAK54641.1; -; mRNA.
EMBL; AF312938; AAG34160.1; -; mRNA.
EMBL; AF310624; AAL55820.1; -; mRNA.
EMBL; AY115107; AAM74470.1; -; Genomic_DNA.
EMBL; BC010195; AAH10195.1; -; mRNA.
EMBL; BC092068; AAH92068.1; -; mRNA.
EMBL; AY024362; AAK00584.1; -; mRNA.
EMBL; AB012276; BAA25313.1; -; mRNA.
CCDS; CCDS21215.1; -.
RefSeq; NP_109618.1; NM_030693.2.
UniGene; Mm.389890; -.
ProteinModelPortal; O70191; -.
SMR; O70191; -.
BioGrid; 223346; 2.
STRING; 10090.ENSMUSP00000047771; -.
iPTMnet; O70191; -.
PhosphoSitePlus; O70191; -.
PaxDb; O70191; -.
PRIDE; O70191; -.
Ensembl; ENSMUST00000047356; ENSMUSP00000047771; ENSMUSG00000038539.
Ensembl; ENSMUST00000107893; ENSMUSP00000103525; ENSMUSG00000038539.
GeneID; 107503; -.
KEGG; mmu:107503; -.
UCSC; uc009gqu.2; mouse.
CTD; 22809; -.
MGI; MGI:2141857; Atf5.
eggNOG; KOG4571; Eukaryota.
eggNOG; ENOG4111ZXT; LUCA.
GeneTree; ENSGT00530000063801; -.
HOGENOM; HOG000004844; -.
HOVERGEN; HBG003535; -.
InParanoid; O70191; -.
KO; K09044; -.
OMA; GQEEVGM; -.
OrthoDB; 1524842at2759; -.
PhylomeDB; O70191; -.
TreeFam; TF316136; -.
ChiTaRS; Atf5; mouse.
PRO; PR:O70191; -.
Proteomes; UP000000589; Chromosome 7.
Bgee; ENSMUSG00000038539; Expressed in 293 organ(s), highest expression level in olfactory epithelium.
ExpressionAtlas; O70191; baseline and differential.
Genevisible; O70191; MM.
GO; GO:0005813; C:centrosome; ISS:UniProtKB.
GO; GO:0005829; C:cytosol; ISO:MGI.
GO; GO:0005654; C:nucleoplasm; ISO:MGI.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0005667; C:transcription factor complex; IDA:MGI.
GO; GO:0003682; F:chromatin binding; IDA:UniProtKB.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:UniProtKB.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
GO; GO:0031072; F:heat shock protein binding; ISO:MGI.
GO; GO:0019900; F:kinase binding; ISO:MGI.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; ISO:MGI.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB.
GO; GO:0015631; F:tubulin binding; ISO:MGI.
GO; GO:0021930; P:cerebellar granule cell precursor proliferation; IMP:UniProtKB.
GO; GO:0007623; P:circadian rhythm; IEP:UniProtKB.
GO; GO:0045444; P:fat cell differentiation; IMP:UniProtKB.
GO; GO:0035264; P:multicellular organism growth; IMP:MGI.
GO; GO:0043066; P:negative regulation of apoptotic process; IDA:MGI.
GO; GO:0048712; P:negative regulation of astrocyte differentiation; ISO:MGI.
GO; GO:1902750; P:negative regulation of cell cycle G2/M phase transition; ISS:UniProtKB.
GO; GO:0008285; P:negative regulation of cell population proliferation; ISS:UniProtKB.
GO; GO:0050768; P:negative regulation of neurogenesis; ISO:MGI.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0021891; P:olfactory bulb interneuron development; IMP:MGI.
GO; GO:0021889; P:olfactory bulb interneuron differentiation; IMP:MGI.
GO; GO:0021988; P:olfactory lobe development; IMP:MGI.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; ISO:MGI.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0009791; P:post-embryonic development; IMP:MGI.
GO; GO:0046605; P:regulation of centrosome cycle; ISS:UniProtKB.
GO; GO:0010468; P:regulation of gene expression; IMP:MGI.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IDA:MGI.
GO; GO:0006355; P:regulation of transcription, DNA-templated; ISO:MGI.
InterPro; IPR029855; ATF5.
InterPro; IPR004827; bZIP.
PANTHER; PTHR13044:SF3; PTHR13044:SF3; 2.
Pfam; PF00170; bZIP_1; 1.
SMART; SM00338; BRLZ; 1.
PROSITE; PS50217; BZIP; 1.
1: Evidence at protein level;
Acetylation; Activator; Complete proteome; Cytoplasm; Cytoskeleton;
DNA-binding; Nucleus; Phosphoprotein; Reference proteome;
Transcription; Transcription regulation; Ubl conjugation.
CHAIN 1 283 Cyclic AMP-dependent transcription factor
ATF-5.
/FTId=PRO_0000076587.
DOMAIN 209 272 bZIP. {ECO:0000255|PROSITE-
ProRule:PRU00978}.
REGION 1 21 Required for protein stabilization
induced by IL1B.
{ECO:0000250|UniProtKB:Q9Y2D1}.
REGION 119 218 Interaction with PTP4A1.
{ECO:0000269|PubMed:11278933}.
REGION 211 231 Basic motif. {ECO:0000255|PROSITE-
ProRule:PRU00978}.
REGION 237 251 Leucine-zipper. {ECO:0000255|PROSITE-
ProRule:PRU00978}.
COMPBIAS 123 133 Poly-Pro.
MOD_RES 29 29 N6-acetyllysine; by EP300.
{ECO:0000269|PubMed:24216764}.
MOD_RES 257 257 Phosphoserine.
{ECO:0000250|UniProtKB:Q9Y2D1}.
MUTAGEN 29 29 K->Q: Enhances interaction with CEBPB.
{ECO:0000269|PubMed:24216764}.
MUTAGEN 29 29 K->R: Decreases acetylation levels and
interaction with CEBPB.
{ECO:0000269|PubMed:24216764}.
CONFLICT 146 146 P -> PLP (in Ref. 5; AAK00584).
{ECO:0000305}.
SEQUENCE 283 AA; 30331 MW; 01FA2D352F0590CC CRC64;
MSLLATLGLE LDRALLPASG LGWLVDYGKL PLAPAPLGPY EVLGGALEGG LPGGGEPLAG
DGFSDWMTER VDFTALLPLE APLPPGTLPP PSPAPPDLEA MASLLKKELE QMEDFFLDAP
LLPPPSPPPP PPPAAAPSLP LPLPLPTFDL PQPPTLDTLD LLAVYCRSEA GPGDSGLSTL
PVPQQPPPLA PLPSPARPAP YPSPASTRGD RKQKKRDQNK SAALRYRQRK RAEGEALEGE
CQGLEARNRE LRERAESVER EIQYVKDLLI EVYKARSQRT RST


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