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Gag polyprotein (Pr65gag) (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10 (NC-gag)]

 GAG_XMRV4               Reviewed;         536 AA.
Q2F7I9;
19-JAN-2010, integrated into UniProtKB/Swiss-Prot.
21-MAR-2006, sequence version 1.
07-APR-2021, entry version 66.
RecName: Full=Gag polyprotein;
Short=Pr65gag;
AltName: Full=Core polyprotein;
Contains:
RecName: Full=Matrix protein p15;
Short=MA;
Contains:
RecName: Full=RNA-binding phosphoprotein p12;
AltName: Full=pp12;
Contains:
RecName: Full=Capsid protein p30;
Short=CA;
Contains:
RecName: Full=Nucleocapsid protein p10;
Short=NC-gag;
Name=gag;
Xenotropic MuLV-related virus (isolate VP42) (XMRV).
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus;
unclassified Gammaretrovirus.
NCBI_TaxID=356664;
NCBI_TaxID=9606; Homo sapiens (Human).
[1]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
PubMed=16609730; DOI=10.1371/journal.ppat.0020025;
Urisman A., Molinaro R.J., Fischer N., Plummer S.J., Casey G., Klein E.A.,
Malathi K., Magi-Galluzzi C., Tubbs R.R., Ganem D., Silverman R.H.,
DeRisi J.L.;
"Identification of a novel Gammaretrovirus in prostate tumors of patients
homozygous for R462Q RNASEL variant.";
PLoS Pathog. 2:E25-E25(2006).
-!- FUNCTION: Gag polyprotein plays a role in budding and is processed by
the viral protease during virion maturation outside the cell. During
budding, it recruits, in a PPXY-dependent or independent manner, Nedd4-
like ubiquitin ligases that conjugate ubiquitin molecules to Gag, or to
Gag binding host factors. Interaction with HECT ubiquitin ligases
probably link the viral protein to the host ESCRT pathway and
facilitate release (By similarity). {ECO:0000250}.
-!- FUNCTION: Matrix protein p15 targets Gag and gag-pol polyproteins to
the plasma membrane via a multipartite membrane binding signal, that
includes its myristoylated N-terminus. Also mediates nuclear
localization of the preintegration complex (By similarity).
{ECO:0000250}.
-!- FUNCTION: Capsid protein p30 forms the spherical core of the virion
that encapsulates the genomic RNA-nucleocapsid complex. {ECO:0000250}.
-!- FUNCTION: Nucleocapsid protein p10 is involved in the packaging and
encapsidation of two copies of the genome. Binds with high affinity to
conserved elements within the packaging signal, located near the 5'-end
of the genome. This binding is dependent on genome dimerization (By
similarity). {ECO:0000250}.
-!- SUBUNIT: Capsid protein p30 is a homohexamer, that further associates
as homomultimer. The virus core is composed of a lattice formed from
hexagonal rings, each containing six capsid monomers (By similarity).
{ECO:0000250}.
-!- SUBCELLULAR LOCATION: [Gag polyprotein]: Virion {ECO:0000250}. Host
cell membrane {ECO:0000305}; Lipid-anchor {ECO:0000305}. Host late
endosome membrane {ECO:0000305}; Lipid-anchor {ECO:0000305}. Host
endosome, host multivesicular body {ECO:0000250}. Note=These locations
are probably linked to virus assembly sites. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: [Matrix protein p15]: Virion {ECO:0000305}.
-!- SUBCELLULAR LOCATION: [Capsid protein p30]: Virion {ECO:0000305}.
-!- SUBCELLULAR LOCATION: [Nucleocapsid protein p10]: Virion {ECO:0000305}.
-!- DOMAIN: Late-budding domains (L domains) are short sequence motifs
essential for viral particle budding. They recruit proteins of the host
ESCRT machinery (Endosomal Sorting Complex Required for Transport) or
ESCRT-associated proteins. RNA-binding phosphoprotein p12 contains one
L domain: a PPXY motif which potentially interacts with the WW domain 3
of NEDD4 E3 ubiquitin ligase. Matrix protein p15 contains one L domain:
a PTAP/PSAP motif, which potentially interacts with the UEV domain of
TSG101. The junction between the matrix protein p15 and RNA-binding
phosphoprotein p12 also contains one L domain: a LYPX(n)L motif which
potentially interacts with PDCD6IP (By similarity). {ECO:0000250}.
-!- PTM: Specific enzymatic cleavages by the viral protease yield mature
proteins. The protease is released by autocatalytic cleavage. The
polyprotein is cleaved during and after budding, this process is termed
maturation (By similarity). {ECO:0000250}.
-!- PTM: RNA-binding phosphoprotein p12 is phosphorylated on serine
residues. {ECO:0000250}.
---------------------------------------------------------------------------
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EMBL; DQ241302; ABB83227.1; -; Genomic_RNA.
SMR; Q2F7I9; -.
Proteomes; UP000008602; Genome.
GO; GO:0044185; C:host cell late endosome membrane; IEA:UniProtKB-SubCell.
GO; GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell.
GO; GO:0072494; C:host multivesicular body; IEA:UniProtKB-SubCell.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0039702; P:viral budding via host ESCRT complex; IEA:UniProtKB-KW.
Gene3D; 1.10.150.180; -; 1.
Gene3D; 1.10.375.10; -; 1.
InterPro; IPR000840; G_retro_matrix.
InterPro; IPR036946; G_retro_matrix_sf.
InterPro; IPR003036; Gag_P30.
InterPro; IPR008919; Retrov_capsid_N.
InterPro; IPR010999; Retrovr_matrix.
InterPro; IPR001878; Znf_CCHC.
InterPro; IPR036875; Znf_CCHC_sf.
Pfam; PF01140; Gag_MA; 1.
Pfam; PF02093; Gag_p30; 1.
Pfam; PF00098; zf-CCHC; 1.
SMART; SM00343; ZnF_C2HC; 1.
SUPFAM; SSF47836; SSF47836; 1.
SUPFAM; SSF47943; SSF47943; 1.
SUPFAM; SSF57756; SSF57756; 1.
PROSITE; PS50158; ZF_CCHC; 1.
3: Inferred from homology;
Capsid protein; Coiled coil; Host cell membrane; Host endosome;
Host membrane; Host-virus interaction; Lipoprotein; Membrane;
Metal-binding; Myristate; Phosphoprotein; RNA-binding; Viral budding;
Viral budding via the host ESCRT complexes; Viral nucleoprotein;
Viral release from host cell; Virion; Zinc; Zinc-finger.
INIT_MET 1
/note="Removed; by host"
/evidence="ECO:0000250"
CHAIN 2..536
/note="Gag polyprotein"
/evidence="ECO:0000250"
/id="PRO_0000390840"
CHAIN 2..129
/note="Matrix protein p15"
/evidence="ECO:0000255"
/id="PRO_0000390841"
CHAIN 130..213
/note="RNA-binding phosphoprotein p12"
/evidence="ECO:0000255"
/id="PRO_0000390842"
CHAIN 214..476
/note="Capsid protein p30"
/evidence="ECO:0000255"
/id="PRO_0000390843"
CHAIN 477..536
/note="Nucleocapsid protein p10"
/evidence="ECO:0000255"
/id="PRO_0000390844"
ZN_FING 500..517
/note="CCHC-type"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00047"
COILED 436..476
/evidence="ECO:0000255"
MOTIF 109..112
/note="PTAP/PSAP motif"
MOTIF 128..132
/note="LYPX(n)L motif"
MOTIF 161..164
/note="PPXY motif"
SITE 129..130
/note="Cleavage; by viral protease p14"
/evidence="ECO:0000250"
SITE 213..214
/note="Cleavage; by viral protease p14"
/evidence="ECO:0000250"
SITE 476..477
/note="Cleavage; by viral protease p14"
/evidence="ECO:0000250"
MOD_RES 190
/note="Phosphoserine; by host"
/evidence="ECO:0000250"
LIPID 2
/note="N-myristoyl glycine; by host"
/evidence="ECO:0000250"
SEQUENCE 536 AA; 60402 MW; 14E6C765479E3C24 CRC64;
MGQTVTTPLS LTLQHWGDVQ RIASNQSVDV KKRRWVTFCS AEWPTFNVGW PQDGTFNLGI
ISQVKSRVFC PGPHGHPDQV PYIVTWEALA YDPPPWVKPF VSPKPPPLPT APVLPPGPSA
QPPSRSALYP ALTPSIKSKP PKPQVLPDSG GPLIDLLTED PPPYGAQPSS SARENNEEEA
ATTSEVSPPS PMVSRLRGRR DPPAADSTTS QAFPLRMGGD GQLQYWPFSS SDLYNWKNNN
PSFSEDPGKL TALIESVLIT HQPTWDDCQQ LLGTLLTGEE KQRVLLEARK AVRGNDGRPT
QLPNEVNAAF PLERPDWGYT TTEGRNHLVL YRQLLLAGLQ NAGRSPTNLA KVKGITQGPN
ESPSAFLERL KEAYRRYTPY DPEDPGQETN VSMSFIWQSA PDIGRKLERL EDLKSKTLGD
LVREAEKIFN KRETPEEREE RIRREIEEKE ERRRAEDEQR ERERDRRRHR EMSKLLATVV
IGQRQDRQGG ERRRPQLDKD QCAYCKEKGH WAKDCPKKPR GPRGPRPQTS LLTLGD


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Related Genes :
[gag] Gag polyprotein (Pr65gag) (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Gag (NC-gag)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Gag (NC-gag)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Gag (NC-gag)]
[gag-pol] Gag-Pol polyprotein (Pr180gag-pol) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10 (NC-pol); Protease p14 (PR) (EC 3.4.23.-); Reverse transcriptase/ribonuclease H p80 (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase p46 (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr180gag-pol) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10 (NC-pol); Protease p14 (PR) (EC 3.4.23.-); Reverse transcriptase/ribonuclease H p80 (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase p46 (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr180gag-pol) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10 (NC-pol); Protease p14 (PR) (EC 3.4.23.-); Reverse transcriptase/ribonuclease H p80 (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase p46 (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr180gag-pol) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Pol (NC-pol); Protease (PR) (EC 3.4.23.-) (p14); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p80); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-) (p46)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Gag (NC-gag)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Pol (NC-pol); Protease (PR) (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p80); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-) (p46)]
[pro-pol] Gag-Pol polyprotein (Pr125Pol) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Pol (NC-pol); Protease/Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4) (p87); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-) (p42)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Gag (NC-gag)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Gag (NC-gag)]
[gag] Gag polyprotein (Pr65gag) (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10 (NC-gag)]
[gag-pol] Gag-Pol polyprotein (Pr180gag-pol) [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Gag (NC-gag)]
[gag-pol] Gag-pol polyprotein [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Gag (NC-gag)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[pol] Gag-Pol polyprotein [Cleaved into: Matrix protein p15; RNA-binding phosphoprotein p12 (pp12); Capsid protein p30; Nucleocapsid protein p10-Pol (NC-pol); Protease (EC 3.4.23.-); Reverse transcriptase/ribonuclease H (RT) (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.4); Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Gag (NC-gag)]
[gag] Gag polyprotein (Pr65gag) (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10 (NC-gag)]
[gag] Gag polyprotein (Pr65gag) (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10 (NC-gag)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Gag (NC-gag)]
[gag] Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-Gag (NC-gag)]

Bibliography :
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