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H-2 class II histocompatibility antigen gamma chain (Ia antigen-associated invariant chain) (Ii) (MHC class II-associated invariant chain) (CD antigen CD74) [Cleaved into: Class-II-associated invariant chain peptide (CLIP)]

 HG2A_RAT                Reviewed;         280 AA.
P10247;
01-JUL-1989, integrated into UniProtKB/Swiss-Prot.
01-FEB-1991, sequence version 2.
07-APR-2021, entry version 168.
RecName: Full=H-2 class II histocompatibility antigen gamma chain {ECO:0000305};
AltName: Full=Ia antigen-associated invariant chain;
Short=Ii;
AltName: Full=MHC class II-associated invariant chain;
AltName: CD_antigen=CD74;
Contains:
RecName: Full=Class-II-associated invariant chain peptide {ECO:0000250|UniProtKB:P04233};
Short=CLIP {ECO:0000250|UniProtKB:P04233};
Name=Cd74 {ECO:0000312|RGD:2313};
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
Murinae; Rattus.
NCBI_TaxID=10116;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=PVG X DA; TISSUE=Spleen;
PubMed=2499873; DOI=10.1093/nar/17.10.3983;
McKnight A.J., Mason D.W., Barclay A.N.;
"Sequence of a rat MHC class II-associated invariant chain cDNA clone
containing a 64 amino acid thyroglobulin-like domain.";
Nucleic Acids Res. 17:3983-3984(1989).
[2]
NUCLEOTIDE SEQUENCE [MRNA] OF 1-192 AND 257-280.
STRAIN=Lewis;
PubMed=3264906; DOI=10.1093/nar/16.24.11822;
Henkes W., Syha J., Reske K.;
"Nucleotide sequence of rat invariant gamma chain cDNA clone pLR gamma
34.3.";
Nucleic Acids Res. 16:11822-11822(1988).
[3]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-9, AND IDENTIFICATION BY MASS
SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22673903; DOI=10.1038/ncomms1871;
Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C.,
Olsen J.V.;
"Quantitative maps of protein phosphorylation sites across 14 different rat
organs and tissues.";
Nat. Commun. 3:876-876(2012).
-!- FUNCTION: Plays a critical role in MHC class II antigen processing by
stabilizing peptide-free class II alpha/beta heterodimers in a complex
soon after their synthesis and directing transport of the complex from
the endoplasmic reticulum to compartments where peptide loading of
class II takes place. Enhance also the stimulation of T-cell responses
through interaction with CD44. {ECO:0000250|UniProtKB:P04441}.
-!- FUNCTION: [Class-II-associated invariant chain peptide]: Binds to the
peptide-binding site of MHC class II alpha/beta heterodimers forming an
alpha-beta-CLIP complex, thereby preventing the loading of antigenic
peptides to the MHC class II complex until its release by HLA-DM in the
endosome. {ECO:0000250|UniProtKB:P04233}.
-!- FUNCTION: [Isoform Long]: Stabilizes the conformation of mature CTSL by
binding to its active site and serving as a chaperone to help maintain
a pool of mature enzyme in endocytic compartments and extracellular
space of antigen-presenting cells (APCs).
{ECO:0000250|UniProtKB:P04441}.
-!- SUBUNIT: Nonamer composed of three alpha/beta/gamma heterotrimers.
Interacts with CD44; this complex is essential for the MIF-induced
signaling cascade that results in B cell survival. {ECO:0000250,
ECO:0000250|UniProtKB:P04441}.
-!- SUBUNIT: [Isoform Long]: Interacts with the mature form of CTSL; the
complex survive in neutral pH environment.
{ECO:0000250|UniProtKB:P04441}.
-!- SUBCELLULAR LOCATION: [Isoform Long]: Late endosome
{ECO:0000250|UniProtKB:P04441}. Lysosome
{ECO:0000250|UniProtKB:P04441}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250|UniProtKB:P04233};
Single-pass type II membrane protein {ECO:0000250|UniProtKB:P04233}.
Endoplasmic reticulum membrane {ECO:0000250|UniProtKB:P04233}. Golgi
apparatus, trans-Golgi network {ECO:0000250|UniProtKB:P04233}. Endosome
{ECO:0000250|UniProtKB:P04233}. Lysosome
{ECO:0000250|UniProtKB:P04233}. Note=Transits through a number of
intracellular compartments in the endocytic pathway. It can either
undergo proteolysis or reach the cell membrane.
{ECO:0000250|UniProtKB:P04233}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=Long;
IsoId=P10247-1; Sequence=Displayed;
Name=Short;
IsoId=P10247-2; Sequence=VSP_005333;
---------------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
---------------------------------------------------------------------------
EMBL; X14254; CAA32468.1; -; mRNA.
EMBL; X13044; CAA31450.1; -; mRNA.
PIR; S04362; S04362.
RefSeq; NP_037201.1; NM_013069.2. [P10247-2]
RefSeq; XP_006254823.1; XM_006254761.3. [P10247-1]
SMR; P10247; -.
STRING; 10116.ENSRNOP00000025354; -.
MEROPS; I31.002; -.
GlyGen; P10247; 3 sites.
iPTMnet; P10247; -.
PhosphoSitePlus; P10247; -.
PaxDb; P10247; -.
PRIDE; P10247; -.
Ensembl; ENSRNOT00000025344; ENSRNOP00000025342; ENSRNOG00000018735. [P10247-2]
Ensembl; ENSRNOT00000025354; ENSRNOP00000025354; ENSRNOG00000018735. [P10247-1]
GeneID; 25599; -.
KEGG; rno:25599; -.
UCSC; RGD:2313; rat. [P10247-1]
CTD; 972; -.
RGD; 2313; Cd74.
eggNOG; KOG1214; Eukaryota.
GeneTree; ENSGT00390000008961; -.
HOGENOM; CLU_086066_1_0_1; -.
InParanoid; P10247; -.
OMA; GTFRPQC; -.
OrthoDB; 1190626at2759; -.
PhylomeDB; P10247; -.
TreeFam; TF317779; -.
Reactome; R-RNO-202733; Cell surface interactions at the vascular wall.
Reactome; R-RNO-2132295; MHC class II antigen presentation.
PRO; PR:P10247; -.
Proteomes; UP000002494; Chromosome 18.
Bgee; ENSRNOG00000018735; Expressed in spleen and 21 other tissues.
ExpressionAtlas; P10247; baseline and differential.
Genevisible; P10247; RN.
GO; GO:0009986; C:cell surface; ISO:RGD.
GO; GO:0005737; C:cytoplasm; ISO:RGD.
GO; GO:0005783; C:endoplasmic reticulum; ISO:RGD.
GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO; GO:0009897; C:external side of plasma membrane; ISO:RGD.
GO; GO:0005615; C:extracellular space; ISO:RGD.
GO; GO:0005794; C:Golgi apparatus; ISO:RGD.
GO; GO:0016021; C:integral component of membrane; ISO:RGD.
GO; GO:0005770; C:late endosome; ISS:UniProtKB.
GO; GO:0005764; C:lysosome; ISS:UniProtKB.
GO; GO:0035692; C:macrophage migration inhibitory factor receptor complex; ISS:BHF-UCL.
GO; GO:0042613; C:MHC class II protein complex; IEA:Ensembl.
GO; GO:0005771; C:multivesicular body; ISO:RGD.
GO; GO:0035693; C:NOS2-CD74 complex; ISS:BHF-UCL.
GO; GO:0005634; C:nucleus; ISO:RGD.
GO; GO:0005886; C:plasma membrane; ISO:RGD.
GO; GO:0032991; C:protein-containing complex; ISO:RGD.
GO; GO:0005773; C:vacuole; ISO:RGD.
GO; GO:0001540; F:amyloid-beta binding; ISO:RGD.
GO; GO:0042609; F:CD4 receptor binding; ISO:RGD.
GO; GO:0019955; F:cytokine binding; ISO:RGD.
GO; GO:0004896; F:cytokine receptor activity; ISS:BHF-UCL.
GO; GO:0035718; F:macrophage migration inhibitory factor binding; ISO:RGD.
GO; GO:0042289; F:MHC class II protein binding; ISO:RGD.
GO; GO:0042658; F:MHC class II protein binding, via antigen binding groove; ISO:RGD.
GO; GO:0023026; F:MHC class II protein complex binding; ISO:RGD.
GO; GO:0050998; F:nitric-oxide synthase binding; ISS:BHF-UCL.
GO; GO:0044183; F:protein folding chaperone; ISO:RGD.
GO; GO:0000187; P:activation of MAPK activity; IDA:RGD.
GO; GO:0019882; P:antigen processing and presentation; ISO:RGD.
GO; GO:0019886; P:antigen processing and presentation of exogenous peptide antigen via MHC class II; ISO:RGD.
GO; GO:0008283; P:cell population proliferation; IDA:RGD.
GO; GO:0051085; P:chaperone cofactor-dependent protein refolding; ISO:RGD.
GO; GO:0006952; P:defense response; ISO:RGD.
GO; GO:0016064; P:immunoglobulin mediated immune response; ISO:RGD.
GO; GO:0006886; P:intracellular protein transport; ISO:RGD.
GO; GO:0035691; P:macrophage migration inhibitory factor signaling pathway; ISS:BHF-UCL.
GO; GO:0043066; P:negative regulation of apoptotic process; ISS:UniProtKB.
GO; GO:0030336; P:negative regulation of cell migration; ISO:RGD.
GO; GO:0043518; P:negative regulation of DNA damage response, signal transduction by p53 class mediator; ISS:BHF-UCL.
GO; GO:1902166; P:negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; ISS:BHF-UCL.
GO; GO:0002906; P:negative regulation of mature B cell apoptotic process; ISS:BHF-UCL.
GO; GO:0002792; P:negative regulation of peptide secretion; ISO:RGD.
GO; GO:0045581; P:negative regulation of T cell differentiation; ISO:RGD.
GO; GO:0045060; P:negative thymic T cell selection; ISO:RGD.
GO; GO:0030890; P:positive regulation of B cell proliferation; ISO:RGD.
GO; GO:2000343; P:positive regulation of chemokine (C-X-C motif) ligand 2 production; ISS:BHF-UCL.
GO; GO:0032722; P:positive regulation of chemokine production; ISO:RGD.
GO; GO:0001961; P:positive regulation of cytokine-mediated signaling pathway; ISS:BHF-UCL.
GO; GO:0002606; P:positive regulation of dendritic cell antigen processing and presentation; ISS:BHF-UCL.
GO; GO:0070374; P:positive regulation of ERK1 and ERK2 cascade; ISS:BHF-UCL.
GO; GO:0048146; P:positive regulation of fibroblast proliferation; ISO:RGD.
GO; GO:0010628; P:positive regulation of gene expression; ISO:RGD.
GO; GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB signaling; ISO:RGD.
GO; GO:0032755; P:positive regulation of interleukin-6 production; ISO:RGD.
GO; GO:0032757; P:positive regulation of interleukin-8 production; ISO:RGD.
GO; GO:0033674; P:positive regulation of kinase activity; ISO:RGD.
GO; GO:0060907; P:positive regulation of macrophage cytokine production; ISS:BHF-UCL.
GO; GO:2000448; P:positive regulation of macrophage migration inhibitory factor signaling pathway; ISO:RGD.
GO; GO:0043410; P:positive regulation of MAPK cascade; ISO:RGD.
GO; GO:0045657; P:positive regulation of monocyte differentiation; ISO:RGD.
GO; GO:0090023; P:positive regulation of neutrophil chemotaxis; ISS:BHF-UCL.
GO; GO:0050731; P:positive regulation of peptidyl-tyrosine phosphorylation; ISS:BHF-UCL.
GO; GO:0031394; P:positive regulation of prostaglandin biosynthetic process; ISO:RGD.
GO; GO:0001934; P:positive regulation of protein phosphorylation; ISO:RGD.
GO; GO:0045582; P:positive regulation of T cell differentiation; ISO:RGD.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISO:RGD.
GO; GO:0002830; P:positive regulation of type 2 immune response; ISO:RGD.
GO; GO:0046598; P:positive regulation of viral entry into host cell; ISO:RGD.
GO; GO:0045059; P:positive thymic T cell selection; ISO:RGD.
GO; GO:0001516; P:prostaglandin biosynthetic process; ISS:UniProtKB.
GO; GO:0050821; P:protein stabilization; ISS:UniProtKB.
GO; GO:0070206; P:protein trimerization; IEA:InterPro.
GO; GO:0065003; P:protein-containing complex assembly; ISO:RGD.
GO; GO:0034341; P:response to interferon-gamma; ISO:RGD.
GO; GO:0002286; P:T cell activation involved in immune response; IBA:GO_Central.
CDD; cd00191; TY; 1.
Gene3D; 1.10.870.10; -; 1.
Gene3D; 4.10.800.10; -; 1.
InterPro; IPR043530; CD74_antigen.
InterPro; IPR015386; MHC_II-assoc_invar/CLIP_MHC-bd.
InterPro; IPR022339; MHC_II-assoc_invar_chain.
InterPro; IPR011988; MHC_II-assoc_invariant_trimer.
InterPro; IPR036613; MHCII_invariant_trimer_sf.
InterPro; IPR000716; Thyroglobulin_1.
InterPro; IPR036857; Thyroglobulin_1_sf.
Pfam; PF09307; MHC2-interact; 1.
Pfam; PF08831; MHCassoc_trimer; 1.
Pfam; PF00086; Thyroglobulin_1; 1.
PIRSF; PIRSF001992; CD74_antigen; 1.
PRINTS; PR01990; CD74ANTIGEN.
SMART; SM00211; TY; 1.
SUPFAM; SSF48305; SSF48305; 1.
SUPFAM; SSF57610; SSF57610; 1.
PROSITE; PS00484; THYROGLOBULIN_1_1; 1.
PROSITE; PS51162; THYROGLOBULIN_1_2; 1.
1: Evidence at protein level;
Adaptive immunity; Alternative splicing; Cell membrane; Chaperone;
Disulfide bond; Endoplasmic reticulum; Endosome; Glycoprotein;
Golgi apparatus; Immunity; Lysosome; Membrane; Phosphoprotein;
Proteoglycan; Reference proteome; Signal-anchor; Transmembrane;
Transmembrane helix.
CHAIN 1..280
/note="H-2 class II histocompatibility antigen gamma chain"
/id="PRO_0000067956"
PEPTIDE 81..104
/note="Class-II-associated invariant chain peptide"
/evidence="ECO:0000250|UniProtKB:P04233"
/id="PRO_0000448888"
TOPO_DOM 1..30
/note="Cytoplasmic"
/evidence="ECO:0000255"
TRANSMEM 31..56
/note="Helical; Signal-anchor for type II membrane protein"
/evidence="ECO:0000255"
TOPO_DOM 57..280
/note="Extracellular"
/evidence="ECO:0000255"
DOMAIN 194..255
/note="Thyroglobulin type-1"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00500"
MOD_RES 9
/note="Phosphoserine"
/evidence="ECO:0007744|PubMed:22673903"
CARBOHYD 114
/note="N-linked (GlcNAc...) asparagine"
/evidence="ECO:0000255"
CARBOHYD 120
/note="N-linked (GlcNAc...) asparagine"
/evidence="ECO:0000255"
CARBOHYD 266
/note="O-linked (Xyl...) (glycosaminoglycan) serine"
/evidence="ECO:0000250"
DISULFID 197..216
/evidence="ECO:0000255|PROSITE-ProRule:PRU00500"
DISULFID 227..234
/evidence="ECO:0000255|PROSITE-ProRule:PRU00500"
DISULFID 236..255
/evidence="ECO:0000255|PROSITE-ProRule:PRU00500"
VAR_SEQ 193..256
/note="Missing (in isoform Short)"
/evidence="ECO:0000305"
/id="VSP_005333"
SEQUENCE 280 AA; 31642 MW; D935D169A98B5732 CRC64;
MDDQRDLISN HEQLPILGQR ARAPESNCNR GVLYTSVSVL VALLLAGQAT TAYFLYQQQG
RLDKLTVTSQ NLQLENLRMK LPKSAKPVSP MRMATPLLMR PLSMDNMLQA PVKNVTKYGN
MTQDHVMHLL TKSGPVNYPQ LKGSFPENLK HLKNSMNGLD WKVFESWMKQ WLLFEMSKNS
LEEKQPTQTP PKVLTKCQEE VSHIPDVHPG AFRPKCDENG NYMPLQCHGS TGYCWCVFPN
GTEVPHTKSR GRHNCSEPLD MEDPSSGLGV TKQDMGQMFL


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Related Genes :
[Cd74 Ii] H-2 class II histocompatibility antigen gamma chain (Ia antigen-associated invariant chain) (Ii) (Ii chain) (MHC class II-associated invariant chain) (CD antigen CD74) [Cleaved into: Class-II-associated invariant chain peptide (CLIP)]
[Cd74] H-2 class II histocompatibility antigen gamma chain (Ia antigen-associated invariant chain) (Ii) (MHC class II-associated invariant chain) (CD antigen CD74) [Cleaved into: Class-II-associated invariant chain peptide (CLIP)]
[CD74 DHLAG] HLA class II histocompatibility antigen gamma chain (HLA-DR antigens-associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (CD antigen CD74) [Cleaved into: Class-II-associated invariant chain peptide (CLIP)]
[HLA-DQB2 HLA-DXB] HLA class II histocompatibility antigen, DQ beta 2 chain (HLA class II histocompatibility antigen, DX beta chain) (MHC class II antigen DQB2)
[HLA-DQA2 HLA-DXA] HLA class II histocompatibility antigen, DQ alpha 2 chain (DX alpha chain) (HLA class II histocompatibility antigen, DQ(6) alpha chain) (HLA-DQA1) (MHC class II DQA2)
[HLA-DPB1 HLA-DP1B] HLA class II histocompatibility antigen, DP beta 1 chain (HLA class II histocompatibility antigen, DP(W4) beta chain) (MHC class II antigen DPB1)
[HLA-DRB5] HLA class II histocompatibility antigen, DR beta 5 chain (DR beta-5) (DR2-beta-2) (Dw2) (MHC class II antigen DRB5)
[HLA-DPA1 HLA-DP1A HLASB] HLA class II histocompatibility antigen, DP alpha 1 chain (DP(W3)) (DP(W4)) (HLA-SB alpha chain) (MHC class II DP3-alpha) (MHC class II DPA1)
[HLA-DRA HLA-DRA1] HLA class II histocompatibility antigen, DR alpha chain (MHC class II antigen DRA)
[HLA-DQB1 HLA-DQB] HLA class II histocompatibility antigen, DQ beta 1 chain (MHC class II antigen DQB1)
[HLA-DQA1] HLA class II histocompatibility antigen, DQ alpha 1 chain (DC-1 alpha chain) (DC-alpha) (HLA-DCA) (MHC class II DQA1)
[HLA-DRB3] HLA class II histocompatibility antigen, DR beta 3 chain (MHC class II antigen DRB3)
[HLA-DRB4] HLA class II histocompatibility antigen, DR beta 4 chain (MHC class II antigen DRB4)
[HLA-DRB1] HLA class II histocompatibility antigen, DRB1 beta chain (Human leukocyte antigen DRB1) (HLA-DRB1)
[HLA-E HLA-6.2 HLAE] HLA class I histocompatibility antigen, alpha chain E (MHC class I antigen E) [Cleaved into: Soluble HLA class I histocompatibility antigen, alpha chain E (sHLA-E)]
[Mr1 Mr1a] Major histocompatibility complex class I-related gene protein (MHC class I-related gene protein) (Class I histocompatibility antigen-like protein)
[H2-D1] H-2 class I histocompatibility antigen, D-B alpha chain (H-2D(B))
[MR1] Major histocompatibility complex class I-related gene protein (MHC class I-related gene protein) (Class I histocompatibility antigen-like protein)
[HLA-F HLA-5.4 HLAF] HLA class I histocompatibility antigen, alpha chain F (CDA12) (HLA F antigen) (Leukocyte antigen F) (MHC class I antigen F)
[H2-L] H-2 class I histocompatibility antigen, L-D alpha chain
[MR1] Major histocompatibility complex class I-related gene protein (MHC class I-related gene protein) (Class I histocompatibility antigen-like protein)
[HLA-A HLAA] HLA class I histocompatibility antigen, A alpha chain (Human leukocyte antigen A) (HLA-A)
[HLA-B HLAB] HLA class I histocompatibility antigen, B alpha chain (Human leukocyte antigen B) (HLA-B)
[HLA-C HLAC] HLA class I histocompatibility antigen, C alpha chain (HLA-C) (HLA-Cw) (Human leukocyte antigen C)
[Cd44 Ly-24] CD44 antigen (Extracellular matrix receptor III) (ECMR-III) (GP90 lymphocyte homing/adhesion receptor) (HUTCH-I) (Hermes antigen) (Hyaluronate receptor) (Lymphocyte antigen 24) (Ly-24) (Phagocytic glycoprotein 1) (PGP-1) (Phagocytic glycoprotein I) (PGP-I) (CD antigen CD44)
[CD1A] T-cell surface glycoprotein CD1a (T-cell surface antigen T6/Leu-6) (hTa1 thymocyte antigen) (CD antigen CD1a)
[Patr-DOB] Patr class II histocompatibility antigen, DO beta chain (ChLa class II histocompatibility antigen, DO beta chain) (MHC class II antigen DOB)
[Cd1d1 Cd1.1] Antigen-presenting glycoprotein CD1d1 (CD antigen CD1d.1)
[Mr1 Hlals] Major histocompatibility complex class I-related gene protein (MHC class I-related gene protein)
[Fcgr2 Fcgr2b Ly-17] Low affinity immunoglobulin gamma Fc region receptor II (Fc gamma receptor IIB) (Fc-gamma RII) (Fc-gamma-RIIB) (FcRII) (IgG Fc receptor II beta) (Lymphocyte antigen 17) (Ly-17) (CD antigen CD32)

Bibliography :
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