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High mobility group B protein 2 (High mobility group protein B 1) (AtHMGbeta1) (HMG beta 1) (Nucleosome/chromatin assembly factor group D 02) (Nucleosome/chromatin assembly factor group D 2)

 HMGB2_ARATH             Reviewed;         144 AA.
O49596; A8MQZ3; Q2V4M2; Q9LM85;
02-NOV-2010, integrated into UniProtKB/Swiss-Prot.
01-JUN-1998, sequence version 1.
13-FEB-2019, entry version 132.
RecName: Full=High mobility group B protein 2;
AltName: Full=High mobility group protein B 1;
Short=AtHMGbeta1;
Short=HMG beta 1;
AltName: Full=Nucleosome/chromatin assembly factor group D 02;
Short=Nucleosome/chromatin assembly factor group D 2;
Name=HMGB2; Synonyms=HMGB1, HMGBETA1, NFD02, NFD2;
OrderedLocusNames=At1g20693; ORFNames=F2D10.18;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, AND TISSUE
SPECIFICITY.
TISSUE=Leaf;
PubMed=9461286; DOI=10.1111/j.1432-1033.1997.00646.x;
Stemmer C., Ritt C., Igloi G.L., Grimm R., Grasser K.D.;
"Variability in Arabidopsis thaliana chromosomal high-mobility-group-
1-like proteins.";
Eur. J. Biochem. 250:646-652(1997).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
PubMed=11910074; DOI=10.1126/science.1071006;
Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
Shibata K., Shinagawa A., Shinozaki K.;
"Functional annotation of a full-length Arabidopsis cDNA collection.";
Science 296:141-145(2002).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N.,
Takiguchi Y., Takagi M.;
"ORF cloning and analysis of Arabidopsis transcription factor genes.";
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[8]
PHOSPHORYLATION.
PubMed=12653554; DOI=10.1021/bi027350d;
Stemmer C., Leeming D.J., Franssen L., Grimm R., Grasser K.D.;
"Phosphorylation of maize and Arabidopsis HMGB proteins by protein
kinase CK2alpha.";
Biochemistry 42:3503-3508(2003).
[9]
TISSUE SPECIFICITY.
PubMed=17316617; DOI=10.1016/j.febslet.2007.02.015;
Launholt D., Groenlund J.T., Nielsen H.K., Grasser K.D.;
"Overlapping expression patterns among the genes encoding Arabidopsis
chromosomal high mobility group (HMG) proteins.";
FEBS Lett. 581:1114-1118(2007).
[10]
FUNCTION, TISSUE SPECIFICITY, AND INDUCTION BY COLD; DROUGHT AND SALT.
PubMed=17169924; DOI=10.1093/pcp/pcl057;
Kwak K.J., Kim J.Y., Kim Y.O., Kang H.;
"Characterization of transgenic Arabidopsis plants overexpressing high
mobility group B proteins under high salinity, drought or cold
stress.";
Plant Cell Physiol. 48:221-231(2007).
[11]
REVIEW, AND SUBCELLULAR LOCATION.
PubMed=20123078; DOI=10.1016/j.bbagrm.2009.11.004;
Pedersen D.S., Grasser K.D.;
"The role of chromosomal HMGB proteins in plants.";
Biochim. Biophys. Acta 1799:171-174(2010).
-!- FUNCTION: Binds preferentially double-stranded DNA. Confers
sensitivity to salt and drought stresses.
{ECO:0000269|PubMed:17169924, ECO:0000269|PubMed:9461286}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00267, ECO:0000269|PubMed:20123078}. Cytoplasm, cytosol
{ECO:0000269|PubMed:20123078}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=3;
Name=1;
IsoId=O49596-1; Sequence=Displayed;
Name=2;
IsoId=O49596-2; Sequence=VSP_039940;
Note=Derived from EST data. No experimental confirmation
available.;
Name=3;
IsoId=O49596-3; Sequence=VSP_039941;
Note=Derived from EST data. No experimental confirmation
available.;
-!- TISSUE SPECIFICITY: Mostly expressed in cotyledons, hypocotyls,
leaves, and flowers (excluding pedicels), also present in roots
and stems. {ECO:0000269|PubMed:17169924,
ECO:0000269|PubMed:17316617, ECO:0000269|PubMed:9461286}.
-!- INDUCTION: Up-regulated by cold stress, but down-regulated by
drought and salt stress. {ECO:0000269|PubMed:17169924}.
-!- SIMILARITY: Belongs to the HMGB family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAF80615.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; Y14072; CAA74401.1; -; mRNA.
EMBL; AC069251; AAF80615.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002684; AEE30006.1; -; Genomic_DNA.
EMBL; CP002684; AEE30007.1; -; Genomic_DNA.
EMBL; CP002684; AEE30008.1; -; Genomic_DNA.
EMBL; AF370248; AAK44063.1; -; mRNA.
EMBL; AY063064; AAL34238.1; -; mRNA.
EMBL; AK118543; BAC43146.1; -; mRNA.
EMBL; AB493468; BAH30306.1; -; mRNA.
EMBL; AY084731; AAM61305.1; -; mRNA.
PIR; F86339; F86339.
PIR; T51597; T51597.
RefSeq; NP_001031074.1; NM_001035997.1. [O49596-2]
RefSeq; NP_001077569.1; NM_001084100.1. [O49596-3]
RefSeq; NP_564123.1; NM_101920.3. [O49596-1]
UniGene; At.21298; -.
ProteinModelPortal; O49596; -.
SMR; O49596; -.
BioGrid; 23897; 5.
IntAct; O49596; 4.
STRING; 3702.AT1G20693.1; -.
iPTMnet; O49596; -.
PaxDb; O49596; -.
PRIDE; O49596; -.
EnsemblPlants; AT1G20693.1; AT1G20693.1; AT1G20693. [O49596-1]
EnsemblPlants; AT1G20693.2; AT1G20693.2; AT1G20693. [O49596-2]
EnsemblPlants; AT1G20693.3; AT1G20693.3; AT1G20693. [O49596-3]
GeneID; 838658; -.
Gramene; AT1G20693.1; AT1G20693.1; AT1G20693. [O49596-1]
Gramene; AT1G20693.2; AT1G20693.2; AT1G20693. [O49596-2]
Gramene; AT1G20693.3; AT1G20693.3; AT1G20693. [O49596-3]
KEGG; ath:AT1G20693; -.
Araport; AT1G20693; -.
TAIR; locus:505006135; AT1G20693.
eggNOG; KOG0381; Eukaryota.
eggNOG; COG5648; LUCA.
HOGENOM; HOG000197860; -.
InParanoid; O49596; -.
OMA; ANEKSEY; -.
OrthoDB; 1641977at2759; -.
PhylomeDB; O49596; -.
PRO; PR:O49596; -.
Proteomes; UP000006548; Chromosome 1.
Genevisible; O49596; AT.
GO; GO:0000785; C:chromatin; TAS:TAIR.
GO; GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003682; F:chromatin binding; TAS:TAIR.
GO; GO:0003677; F:DNA binding; IDA:TAIR.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
GO; GO:0030527; F:structural constituent of chromatin; TAS:TAIR.
GO; GO:0006333; P:chromatin assembly or disassembly; TAS:TAIR.
Gene3D; 1.10.30.10; -; 1.
InterPro; IPR009071; HMG_box_dom.
InterPro; IPR036910; HMG_box_dom_sf.
Pfam; PF00505; HMG_box; 1.
SMART; SM00398; HMG; 1.
SUPFAM; SSF47095; SSF47095; 1.
PROSITE; PS50118; HMG_BOX_2; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; Cytoplasm; DNA-binding;
Nucleus; Phosphoprotein; Reference proteome.
CHAIN 1 144 High mobility group B protein 2.
/FTId=PRO_0000399928.
DNA_BIND 38 107 HMG box. {ECO:0000255|PROSITE-
ProRule:PRU00267}.
MOD_RES 125 125 Phosphoserine.
{ECO:0000250|UniProtKB:O49595}.
VAR_SEQ 140 144 EEDDD -> DDD (in isoform 2).
{ECO:0000305}.
/FTId=VSP_039940.
VAR_SEQ 141 144 EDDD -> DDD (in isoform 3).
{ECO:0000305}.
/FTId=VSP_039941.
SEQUENCE 144 AA; 15982 MW; 7A0AD686D4DB9AC3 CRC64;
MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN
PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE KNIKAYNKKL EEGPKEDEES
DKSVSEVNDE DDAEDGSEEE EDDD


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Related Genes :
[HMGB2 HMGB1 HMGBETA1 NFD02 NFD2 At1g20693 F2D10.18] High mobility group B protein 2 (High mobility group protein B 1) (AtHMGbeta1) (HMG beta 1) (Nucleosome/chromatin assembly factor group D 02) (Nucleosome/chromatin assembly factor group D 2)
[HMGB1 HMGA HMGALPHA NFD01 NFD1 ORF13 At3g51880 ATEM1.13] High mobility group B protein 1 (High mobility group protein A) (AtHMGalpha) (HMG alpha) (Nucleosome/chromatin assembly factor group D 01) (Nucleosome/chromatin assembly factor group D 1)
[HMGB3 HMG1 HMGB2 HMGBETA2 NFD03 NFD3 At1g20696 F2D10] High mobility group B protein 3 (High mobility group protein B 2) (AtHMGbeta2) (HMG beta 2) (Nucleosome/chromatin assembly factor group D 03) (Nucleosome/chromatin assembly factor group D 3)
[HMGB4 HMGG HMGGAMMA NFD04 NFD4 At2g17560 MJB20.12] High mobility group B protein 4 (High mobility group protein G) (AtHMGgamma) (HMG gamma) (Nucleosome/chromatin assembly factor group D 04) (Nucleosome/chromatin assembly factor group D 4)
[SSRP1 HMGB8 NFD8 At3g28730 T19N8.2] FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (High mobility group B protein 8) (Nucleosome/chromatin assembly factor group D 08) (Nucleosome/chromatin assembly factor group D 8) (Protein NUCLEAR FUSION DEFECTIVE 8) (Recombination signal sequence recognition protein 1)
[HMGA1 HMGIY] High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility group AT-hook protein 1) (High mobility group protein A1) (High mobility group protein R)
[HMGB5 HMGD HMGDELTA NFD05 NFD5 At4g35570 F8D20.80] High mobility group B protein 5 (High mobility group protein D) (AtHMGdelta) (HMG delta) (Nucleosome/chromatin assembly factor group D 05) (Nucleosome/chromatin assembly factor group D 5)
[HMGB1 HMG1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[Hmgb1 Hmg-1 Hmg1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[HMGB1 HMG1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[HMGB2 HMG2] High mobility group protein B2 (High mobility group protein 2) (HMG-2)
[Hmgb1 Hmg-1 Hmg1] High mobility group protein B1 (Amphoterin) (Heparin-binding protein p30) (High mobility group protein 1) (HMG-1)
[HMGB1 HMG1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[Hmga1 Hmgi Hmgiy] High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility group AT-hook protein 1) (High mobility group protein A1)
[Hmgb2 Hmg2] High mobility group protein B2 (High mobility group protein 2) (HMG-2)
[HMGB1 HMG1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[HMGB1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[HMGB1 HMG-1 HMG1] High mobility group protein B1 (High mobility group protein 1) (HMG-1) (Fragment)
[HMGB1 HMG1 RCJMB04_15a21] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[HMGB1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[HMGB2 HMG2] High mobility group protein B2 (High mobility group protein 2) (HMG-2)
[HMGB1 HMG1 QtsA-13487] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[HMGB2 HMG2] High mobility group protein B2 (High mobility group protein 2) (HMG-2)
[HMGB1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[HMGB1] High mobility group protein B1 (High mobility group protein 1) (HMG-1)
[Hmgb2 Hmg2] High mobility group protein B2 (High mobility group protein 2) (HMG-2)
[Hmga1] High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility group AT-hook protein 1) (High mobility group protein A1)
[HMGA2 HMGIC] High mobility group protein HMGI-C (High mobility group AT-hook protein 2)
[HMGA1 HMGIY] High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility group AT-hook protein 1) (High mobility group protein A1)
[Tfam Hmgts] Transcription factor A, mitochondrial (mtTFA) (Testis-specific high mobility group protein) (TS-HMG)

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