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Histidine kinase CKI1 (EC 2.7.13.3) (Protein CYTOKININ-INDEPENDENT 1)

 CKI1_ARATH              Reviewed;        1122 AA.
O22267; A5YY37;
05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
01-JAN-1998, sequence version 1.
13-FEB-2019, entry version 141.
RecName: Full=Histidine kinase CKI1;
EC=2.7.13.3;
AltName: Full=Protein CYTOKININ-INDEPENDENT 1;
Name=CKI1; OrderedLocusNames=At2g47430; ORFNames=T30B22.27;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND FUNCTION.
STRAIN=cv. Wassilewskija; TISSUE=Shoot;
PubMed=8875940; DOI=10.1126/science.274.5289.982;
Kakimoto T.;
"CKI1, a histidine kinase homolog implicated in cytokinin signal
transduction.";
Science 274:982-985(1996).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 740-1003.
STRAIN=cv. Ag-0, cv. An-1, cv. Br-0, cv. C24, cv. Ct-1, cv. Cvi-1,
cv. Edi-0, cv. Ga-0, cv. Kas-2, cv. Kin-0, cv. Landsberg erecta,
cv. Lz-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, cv. Se-0,
cv. Sorbo, cv. Tsu-1, cv. Van-0, cv. Wa-1, and cv. Wassilewskija;
PubMed=17435248; DOI=10.1534/genetics.107.071928;
Ehrenreich I.M., Stafford P.A., Purugganan M.D.;
"The genetic architecture of shoot branching in Arabidopsis thaliana:
a comparative assessment of candidate gene associations vs.
quantitative trait locus mapping.";
Genetics 176:1223-1236(2007).
[5]
FUNCTION, AND MUTAGENESIS OF ASP-1050.
PubMed=10610126; DOI=10.1271/bbb.63.1627;
Nakamura A., Kakimoto T., Imamura A., Suzuki T., Ueguchi C.,
Mizuno T.;
"Biochemical characterization of a putative cytokinin-responsive His-
kinase, CKI1, from Arabidopsis thaliana.";
Biosci. Biotechnol. Biochem. 63:1627-1630(1999).
[6]
INTERACTION WITH AHP2 AND AHP3.
PubMed=10930573; DOI=10.1016/S0014-5793(00)01860-3;
Urao T., Miyata S., Yamaguchi-Shinozaki K., Shinozaki K.;
"Possible His to Asp phosphorelay signaling in an Arabidopsis two-
component system.";
FEBS Lett. 478:227-232(2000).
[7]
FUNCTION, DISRUPTION PHENOTYPE, DEVELOPMENTAL STAGE, AND TISSUE
SPECIFICITY.
PubMed=12426401; DOI=10.1073/pnas.232580499;
Pischke M.S., Jones L.G., Otsuga D., Fernandez D.E., Drews G.N.,
Sussman M.R.;
"An Arabidopsis histidine kinase is essential for megagametogenesis.";
Proc. Natl. Acad. Sci. U.S.A. 99:15800-15805(2002).
[8]
FUNCTION, DISRUPTION PHENOTYPE, MUTAGENESIS OF 150-ARG--TYR-153, AND
DEVELOPMENTAL STAGE.
PubMed=12774227; DOI=10.1007/s00438-003-0858-7;
Hejatko J., Pernisova M., Eneva T., Palme K., Brzobohaty B.;
"The putative sensor histidine kinase CKI1 is involved in female
gametophyte development in Arabidopsis.";
Mol. Genet. Genomics 269:443-453(2003).
[9]
FUNCTION.
PubMed=18077346; DOI=10.1073/pnas.0706547105;
Tran L.S., Urao T., Qin F., Maruyama K., Kakimoto T., Shinozaki K.,
Yamaguchi-Shinozaki K.;
"Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine
kinases in response to abscisic acid, drought, and salt stress in
Arabidopsis.";
Proc. Natl. Acad. Sci. U.S.A. 104:20623-20628(2007).
[10]
FUNCTION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, HOMODIMERIZATION,
AND MUTAGENESIS OF HIS-405.
PubMed=19622803; DOI=10.1105/tpc.109.066696;
Hejatko J., Ryu H., Kim G.-T., Dobesova R., Choi S., Choi S.M.,
Soucek P., Horak J., Pekarova B., Palme K., Brzobohaty B., Hwang I.;
"The histidine kinases CYTOKININ-INDEPENDENT1 and ARABIDOPSIS
HISTIDINE KINASE2 and 3 regulate vascular tissue development in
Arabidopsis shoots.";
Plant Cell 21:2008-2021(2009).
[11]
FUNCTION, DISRUPTION PHENOTYPE, AND TISSUE SPECIFICITY.
PubMed=20363773; DOI=10.1105/tpc.108.065128;
Deng Y., Dong H., Mu J., Ren B., Zheng B., Ji Z., Yang W.-C.,
Liang Y., Zuo J.;
"Arabidopsis histidine kinase CKI1 acts upstream of histidine
phosphotransfer proteins to regulate female gametophyte development
and vegetative growth.";
Plant Cell 22:1232-1248(2010).
-!- FUNCTION: Essential protein. Functions as a histidine kinase and
transmits the stress signal to a downstream MAPK cascade. This
protein undergoes an ATP-dependent autophosphorylation at a
conserved histidine residue in the kinase core, and a phosphoryl
group is then transferred to a conserved aspartate residue in the
receiver domain. Required for the development of megagametophyte
in female gametophyte (embryo sac) independently of cytokinin.
Contributes to vascular bundle formation and secondary growth in a
cytokinin-independent manner, probably by promoting the
maintenance of mitotic activity and/or identity of procambial
cells. Seems to influence and promote the cytokinin signaling
pathway. {ECO:0000269|PubMed:10610126,
ECO:0000269|PubMed:12426401, ECO:0000269|PubMed:12774227,
ECO:0000269|PubMed:18077346, ECO:0000269|PubMed:19622803,
ECO:0000269|PubMed:20363773, ECO:0000269|PubMed:8875940}.
-!- CATALYTIC ACTIVITY:
Reaction=ATP + protein L-histidine = ADP + protein N-phospho-L-
histidine.; EC=2.7.13.3;
-!- SUBUNIT: Homodimer. Interacts with AHP2 and AHP3.
{ECO:0000269|PubMed:10930573}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:19622803};
Multi-pass membrane protein {ECO:0000269|PubMed:19622803}.
-!- TISSUE SPECIFICITY: Expressed in vascular tissues of inflorescence
stems and floral organs, especially in procambium cells, and in
siliques. {ECO:0000269|PubMed:12426401,
ECO:0000269|PubMed:19622803, ECO:0000269|PubMed:20363773}.
-!- DEVELOPMENTAL STAGE: Present at low levels in developing ovules.
Within mature female gametophytes, high levels in the central cell
nucleus and weak levels in the egg cell nucleus. In fertilized
ovules, expressed in the endosperm nuclei during 2 days after
pollination. {ECO:0000269|PubMed:12426401,
ECO:0000269|PubMed:12774227}.
-!- DISRUPTION PHENOTYPE: Cannot be transmitted through the female
germ line. Impaired megagametogenesis visible from the four-
nucleate stage, with two normal nuclei and two degenerated nuclei,
leading to female sterility. Normal response to cytokinins.
{ECO:0000269|PubMed:12426401, ECO:0000269|PubMed:12774227,
ECO:0000269|PubMed:20363773}.
-----------------------------------------------------------------------
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EMBL; D87545; BAA13416.1; -; mRNA.
EMBL; AC002535; AAC62867.1; -; Genomic_DNA.
EMBL; CP002685; AEC10840.1; -; Genomic_DNA.
EMBL; EF598269; ABQ85241.1; -; Genomic_DNA.
EMBL; EF598270; ABQ85242.1; -; Genomic_DNA.
EMBL; EF598271; ABQ85243.1; -; Genomic_DNA.
EMBL; EF598272; ABQ85244.1; -; Genomic_DNA.
EMBL; EF598273; ABQ85245.1; -; Genomic_DNA.
EMBL; EF598274; ABQ85246.1; -; Genomic_DNA.
EMBL; EF598275; ABQ85247.1; -; Genomic_DNA.
EMBL; EF598276; ABQ85248.1; -; Genomic_DNA.
EMBL; EF598277; ABQ85249.1; -; Genomic_DNA.
EMBL; EF598278; ABQ85250.1; -; Genomic_DNA.
EMBL; EF598279; ABQ85251.1; -; Genomic_DNA.
EMBL; EF598280; ABQ85252.1; -; Genomic_DNA.
EMBL; EF598281; ABQ85253.1; -; Genomic_DNA.
EMBL; EF598282; ABQ85254.1; -; Genomic_DNA.
EMBL; EF598283; ABQ85255.1; -; Genomic_DNA.
EMBL; EF598284; ABQ85256.1; -; Genomic_DNA.
EMBL; EF598285; ABQ85257.1; -; Genomic_DNA.
EMBL; EF598286; ABQ85258.1; -; Genomic_DNA.
EMBL; EF598287; ABQ85259.1; -; Genomic_DNA.
EMBL; EF598288; ABQ85260.1; -; Genomic_DNA.
EMBL; EF598289; ABQ85261.1; -; Genomic_DNA.
EMBL; EF598290; ABQ85262.1; -; Genomic_DNA.
EMBL; EF598291; ABQ85263.1; -; Genomic_DNA.
PIR; T00441; T00441.
RefSeq; NP_182265.1; NM_130311.2.
UniGene; At.341; -.
PDB; 3MM4; X-ray; 2.00 A; A=944-1122.
PDB; 3MMN; X-ray; 2.20 A; A=944-1122.
PDB; 5LNM; X-ray; 1.95 A; A=944-1122.
PDB; 5LNN; X-ray; 1.60 A; A=944-1122.
PDB; 5N2N; X-ray; 2.05 A; A=944-1122.
PDBsum; 3MM4; -.
PDBsum; 3MMN; -.
PDBsum; 5LNM; -.
PDBsum; 5LNN; -.
PDBsum; 5N2N; -.
ProteinModelPortal; O22267; -.
SMR; O22267; -.
BioGrid; 4691; 5.
IntAct; O22267; 3.
STRING; 3702.AT2G47430.1; -.
PaxDb; O22267; -.
PRIDE; O22267; -.
EnsemblPlants; AT2G47430.1; AT2G47430.1; AT2G47430.
GeneID; 819356; -.
Gramene; AT2G47430.1; AT2G47430.1; AT2G47430.
KEGG; ath:AT2G47430; -.
Araport; AT2G47430; -.
TAIR; locus:2061971; AT2G47430.
eggNOG; ENOG410IRDA; Eukaryota.
eggNOG; ENOG410XT1K; LUCA.
HOGENOM; HOG000114067; -.
InParanoid; O22267; -.
OMA; FHAYSTI; -.
OrthoDB; 244938at2759; -.
PhylomeDB; O22267; -.
PRO; PR:O22267; -.
Proteomes; UP000006548; Chromosome 2.
Genevisible; O22267; AT.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005886; C:plasma membrane; IDA:UniProtKB.
GO; GO:0009506; C:plasmodesma; IDA:TAIR.
GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
GO; GO:0004673; F:protein histidine kinase activity; IDA:UniProtKB.
GO; GO:0042803; F:protein homodimerization activity; IDA:UniProtKB.
GO; GO:0009736; P:cytokinin-activated signaling pathway; TAS:TAIR.
GO; GO:0009553; P:embryo sac development; IMP:TAIR.
GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro.
GO; GO:0010087; P:phloem or xylem histogenesis; IMP:UniProtKB.
GO; GO:0080117; P:secondary growth; IMP:UniProtKB.
CDD; cd00075; HATPase_c; 1.
CDD; cd00082; HisKA; 1.
CDD; cd06223; PRTases_typeI; 1.
CDD; cd00156; REC; 1.
InterPro; IPR011006; CheY-like_superfamily.
InterPro; IPR003594; HATPase_C.
InterPro; IPR036890; HATPase_C_sf.
InterPro; IPR005467; His_kinase_dom.
InterPro; IPR003661; HisK_dim/P.
InterPro; IPR036097; HisK_dim/P_sf.
InterPro; IPR000836; PRibTrfase_dom.
InterPro; IPR004358; Sig_transdc_His_kin-like_C.
InterPro; IPR001789; Sig_transdc_resp-reg_receiver.
Pfam; PF02518; HATPase_c; 1.
Pfam; PF00512; HisKA; 1.
Pfam; PF00072; Response_reg; 1.
PRINTS; PR00344; BCTRLSENSOR.
SMART; SM00387; HATPase_c; 1.
SMART; SM00388; HisKA; 1.
SMART; SM00448; REC; 1.
SUPFAM; SSF47384; SSF47384; 1.
SUPFAM; SSF52172; SSF52172; 1.
SUPFAM; SSF55874; SSF55874; 1.
PROSITE; PS50109; HIS_KIN; 1.
PROSITE; PS50110; RESPONSE_REGULATORY; 1.
1: Evidence at protein level;
3D-structure; Cell membrane; Complete proteome; Developmental protein;
Kinase; Membrane; Phosphoprotein; Reference proteome; Transferase;
Transmembrane; Transmembrane helix.
CHAIN 1 1122 Histidine kinase CKI1.
/FTId=PRO_0000398591.
TOPO_DOM 1 12 Cytoplasmic. {ECO:0000255}.
TRANSMEM 13 33 Helical. {ECO:0000255}.
TOPO_DOM 34 345 Extracellular. {ECO:0000255}.
TRANSMEM 346 366 Helical. {ECO:0000255}.
TOPO_DOM 367 1122 Cytoplasmic. {ECO:0000255}.
DOMAIN 402 671 Histidine kinase. {ECO:0000255|PROSITE-
ProRule:PRU00107}.
DOMAIN 987 1120 Response regulatory.
{ECO:0000255|PROSITE-ProRule:PRU00169}.
MOD_RES 405 405 Phosphohistidine; by autocatalysis.
{ECO:0000255|PROSITE-ProRule:PRU00107}.
MOD_RES 1050 1050 4-aspartylphosphate.
{ECO:0000255|PROSITE-ProRule:PRU00169}.
MUTAGEN 150 153 RGDY->GT: In cki1-r; normal phenotype
rescued from En-1 insertional disruption
phenotype. {ECO:0000269|PubMed:12774227}.
MUTAGEN 405 405 H->Q: Dysfunction of the two-component
signaling pathway leading to defects in
procambial cell maintenance and
proliferation, as well as the absence of
secondary growth.
{ECO:0000269|PubMed:19622803}.
MUTAGEN 1050 1050 D->Q,E: Loss of histidine kinase
activity. {ECO:0000269|PubMed:10610126}.
TURN 980 985 {ECO:0000244|PDB:5LNN}.
STRAND 987 991 {ECO:0000244|PDB:5LNN}.
HELIX 995 1007 {ECO:0000244|PDB:5LNN}.
STRAND 1011 1018 {ECO:0000244|PDB:5LNN}.
HELIX 1019 1036 {ECO:0000244|PDB:5LNN}.
STRAND 1045 1051 {ECO:0000244|PDB:5LNN}.
STRAND 1054 1056 {ECO:0000244|PDB:5LNN}.
HELIX 1058 1070 {ECO:0000244|PDB:5LNN}.
TURN 1071 1073 {ECO:0000244|PDB:5LNN}.
STRAND 1078 1084 {ECO:0000244|PDB:5LNN}.
HELIX 1088 1097 {ECO:0000244|PDB:5LNN}.
STRAND 1101 1104 {ECO:0000244|PDB:5LNN}.
HELIX 1110 1119 {ECO:0000244|PDB:5LNN}.
SEQUENCE 1122 AA; 125033 MW; C6833F731DA84781 CRC64;
MMVKVTKLVA SRPIVVFCVL AFLVVVFECI WISNWRTTTE NLVKEVASFT EDLRTSLVSE
IENIGKFTYA KTNLSTIGLA RVIDSYITNN DTGFTEIQTQ IAPLLFVAYS TILQVSQVSY
ISRDGLMFSY IAESNTSVAV FANSSSNSSR GDYTWYTQTV DQLTGRLNGN STKSQSLDVT
HTDWFQAAQS NNYTTAFVGT SLGGEDNETL IQSVVSLYSK KGLVSLGFPV KTLTEVLNSL
NLHGEELYMW TKDGTVLVRE GSLNDSFFIS NGSICFGRES NSLWSQCIPE NCSSSGYEVE
IKRLRYQAFC SVIEVSGVPL RYTLMFPNKG GATRIKHQAE KAKYQLIVVM IFLGFGWPVW
FVWFMMQATR REMHMRATLI NQMEATQQAE RKSMNKSQAF ANASHDIRGA LAGMKGLIDI
CRDGVKPGSD VDTTLNQVNV CAKDLVALLN SVLDMSKIES GKMQLVEEDF NLSKLLEDVI
DFYHPVAMKK GVDVVLDPHD GSVFKFSNVR GDSGRLKQIL NNLVSNAVKF TVDGHIAVRA
WAQRPGSNSS VVLASYPKGV SKFVKSMFCK NKEESSTYET EISNSIRNNA NTMEFVFEVD
DTGKGIPMEM RKSVFENYVQ VRETAQGHQG TGLGLGIVQS LVRLMGGEIR ITDKAMGEKG
TCFQFNVLLT TLESPPVSDM KVRQEIEAGG DYVSTPNLGL TINTSLGGSM NIRNLSPRFN
NCLSSSPKQE GSRVVLLLKN EERRRVTEKY IKNLGIKVTV VEKWEHLSYA LERLFGFSPQ
SSMGRAECSL SCPSSRELPF IGMDGIDSRS QLPKRRSISF SAVVLLVIDA KTGPFFELCD
IVKQFRRGLP HGISCKVVWL NESSTRVSER GDISCSRPLH GSRLMEVLKM LPEFGGTVLK
EPPTELQRES LLRHSFVAER SPKHKVQEEG PSSMFNKKLG KRIMASTDSE SETRVKSVRT
GRKPIGNPED EQETSKPSDD EFLRGKRVLV VDDNFISRKV ATGKLKKMGV SEVEQCDSGK
EALRLVTEGL TQREEQGSVD KLPFDYIFMD CQMPEMDGYE ATREIRKVEK SYGVRTPIIA
VSGHDPGSEE ARETIQAGMD AFLDKSLNQL ANVIREIESK RH


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WP1644: DNA replication
WP1650: Fluorobenzoate degradation
WP1653: Galactose metabolism
WP1654: gamma-Hexachlorocyclohexane degradation
WP1657: Glycerolipid metabolism
WP1659: Glycine, serine and threonine metabolism
WP1661: Glyoxylate and dicarboxylate metabolism
WP1663: Homologous recombination
WP1665: Limonene and pinene degradation
WP1672: Mismatch repair

Related Genes :
[CKI1 At2g47430 T30B22.27] Histidine kinase CKI1 (EC 2.7.13.3) (Protein CYTOKININ-INDEPENDENT 1)
[AHK4 CRE1 RAW1 WOL At2g01830 T23K3.2] Histidine kinase 4 (EC 2.7.13.3) (Arabidopsis histidine kinase 4) (AtHK4) (Cytokinin receptor CYTOKININ RESPONSE 1) (AtCRE1) (Cytokinin receptor CRE1) (Phosphoprotein phosphatase AHK4) (EC 3.1.3.16) (Protein AUTHENTIC HIS-KINASE 4) (Protein ROOT AS IN WOL 1) (Protein WOODEN LEG)
[NAP1 YKR048C] Nucleosome assembly protein
[cdc-14 C17G10.4] Tyrosine-protein phosphatase cdc-14 (EC 3.1.3.48) (Cell division cycle-related protein 14)
[AHK3 ORE12 At1g27320 F17L21.11] Histidine kinase 3 (EC 2.7.13.3) (Arabidopsis histidine kinase 3) (AtHK3) (Protein AUTHENTIC HIS-KINASE 3) (Protein ORESARA 12)
[AHK2 At5g35750 MXH1.16] Histidine kinase 2 (EC 2.7.13.3) (Arabidopsis histidine kinase 2) (AtHK2) (Protein AUTHENTIC HIS-KINASE 2)
[hchA A8C65_13880 A9R57_25255 AKG99_20940 AMK83_16550 B7C53_22525 B9M99_11580 B9T59_01945 BJJ90_15205 BMT49_12710 BMT53_00170 BUE81_10670 BW690_17225 BZL69_29425 C2U48_24800 C5715_19445 C5N07_21380 C6669_19295 C7B06_02290 C7B07_03930 CDL37_00765 CG691_19145 CG705_13560 CG706_14580 CIJ94_05515 COD46_23180 CRD98_26150 D3I61_11545 DL800_09215 DNQ41_14245 DQE83_22775 DTL43_21780 DTL84_23375 DTM25_06080 EC95NR1_00961 ERS085379_01273 ERS085386_05041 HMPREF3040_01583 HW43_13705 NCTC10082_04431 NCTC10418_03071 NCTC10767_03558 NCTC11022_01867 NCTC11126_04427 NCTC11181_05650 NCTC12950_02263 NCTC13462_05714 NCTC8985_00529 NCTC9111_05933 NCTC9703_00277 PU06_24500 SAMEA3472055_03589 SAMEA3472056_01268 SAMEA3472070_00654 SAMEA3472080_04213 SAMEA3472090_03376 SAMEA3472110_00060 SAMEA3472112_00448 SAMEA3752372_00752 SAMEA3753106_00003 SAMEA3753391_00513 UN91_23615 WQ89_10695] Protein/nucleic acid deglycase HchA (EC 3.1.2.-) (EC 3.5.1.-) (EC 3.5.1.124) (Maillard deglycase)
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[aro-1 aro-2 aro-4 aro-5 aro-9 B14H13.20 NCU016321] Pentafunctional AROM polypeptide [Includes: 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4); 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS); Shikimate kinase (SK) (EC 2.7.1.71); 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10); Shikimate dehydrogenase (EC 1.1.1.25)]
[lin-35 C32F10.2] Retinoblastoma-like protein homolog lin-35 (Abnormal cell lineage protein 35) (Synthetic multivulva protein lin-35)
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[phoQ phoZ STM1230] Virulence sensor histidine kinase PhoQ (EC 2.7.13.3) (EC 3.1.3.-) (Sensor histidine protein kinase/phosphatase PhoQ)
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.47) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[phoQ STM14_1408] Virulence sensor histidine kinase PhoQ (EC 2.7.13.3) (EC 3.1.3.-) (Sensor histidine protein kinase/phosphatase PhoQ)
[phoQ b1129 JW1115] Sensor protein PhoQ (EC 2.7.13.3) (EC 3.1.3.-) (Sensor histidine protein kinase/phosphatase PhoQ)
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.47) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[] Genome polyprotein [Cleaved into: Capsid protein C (Capsid protein) (Core protein); Protein prM (Precursor membrane protein); Peptide pr (Peptide precursor); Small envelope protein M (Matrix protein); Envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Serine protease subunit NS2B (Flavivirin protease NS2B regulatory subunit) (Non-structural protein 2B); Serine protease NS3 (EC 3.4.21.91) (EC 3.6.1.15) (EC 3.6.4.13) (Flavivirin protease NS3 catalytic subunit) (Non-structural protein 3); Non-structural protein 4A (NS4A); Peptide 2k; Non-structural protein 4B (NS4B); RNA-directed RNA polymerase NS5 (EC 2.1.1.56) (EC 2.1.1.57) (EC 2.7.7.48) (Non-structural protein 5)]
[] Non-structural polyprotein (Polyprotein nsP1234) (P1234) [Cleaved into: P123; P123'; mRNA-capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Non-structural protein 1); Protease nsP2 (EC 3.1.3.33) (EC 3.4.22.-) (EC 3.6.1.15) (EC 3.6.4.13) (Non-structural protein 2) (nsP2); Non-structural protein 3 (nsP3); Non-structural protein 3' (nsP3'); RNA-directed RNA polymerase nsP4 (EC 2.7.7.48) (Non-structural protein 4) (nsP4)]
[] Genome polyprotein [Cleaved into: Capsid protein C (Core protein); Protein prM; Peptide pr; Small envelope protein M (Matrix protein); Envelope protein E; Non-structural protein 1 (NS1); Non-structural protein 2A (NS2A); Non-structural protein 2A-alpha (NS2A-alpha); Serine protease subunit NS2B (Flavivirin protease NS2B regulatory subunit) (Non-structural protein 2B); Serine protease NS3 (EC 3.4.21.91) (EC 3.6.1.15) (EC 3.6.4.13) (Flavivirin protease NS3 catalytic subunit) (Non-structural protein 3); Non-structural protein 4A (NS4A); Peptide 2k; Non-structural protein 4B (NS4B); RNA-directed RNA polymerase NS5 (EC 2.1.1.56) (EC 2.1.1.57) (EC 2.7.7.48) (Non-structural protein 5)]
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.47) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[] Non-structural polyprotein (Polyprotein nsP1234) (P1234) [Cleaved into: P123; P123'; mRNA-capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Non-structural protein 1); Protease nsP2 (EC 3.1.3.33) (EC 3.4.22.-) (EC 3.6.1.15) (EC 3.6.4.13) (Non-structural protein 2) (nsP2); Non-structural protein 3 (nsP3); Non-structural protein 3' (nsP3'); RNA-directed RNA polymerase nsP4 (EC 2.7.7.48) (Non-structural protein 4) (nsP4)]
[Nme2] Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (EC 2.7.4.6) (Histidine protein kinase NDKB) (EC 2.7.13.3) (P18) (nm23-M2)

Bibliography :
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