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Histone deacetylase (EC 3 5 1 98)

 F7DUN1_HORSE            Unreviewed;       466 AA.
F7DUN1;
27-JUL-2011, integrated into UniProtKB/TrEMBL.
27-JUL-2011, sequence version 1.
13-FEB-2019, entry version 51.
RecName: Full=Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913};
EC=3.5.1.98 {ECO:0000256|PIRNR:PIRNR037913};
Name=HDAC1 {ECO:0000313|VGNC:VGNC:50592};
Equus caballus (Horse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus.
NCBI_TaxID=9796 {ECO:0000313|Ensembl:ENSECAP00000014039, ECO:0000313|Proteomes:UP000002281};
[1] {ECO:0000313|Ensembl:ENSECAP00000014039, ECO:0000313|Proteomes:UP000002281}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Thoroughbred {ECO:0000313|Ensembl:ENSECAP00000014039,
ECO:0000313|Proteomes:UP000002281};
PubMed=19892987; DOI=10.1126/science.1178158;
Broad Institute Genome Sequencing Platform;
Broad Institute Whole Genome Assembly Team;
Wade C.M., Giulotto E., Sigurdsson S., Zoli M., Gnerre S., Imsland F.,
Lear T.L., Adelson D.L., Bailey E., Bellone R.R., Bloecker H.,
Distl O., Edgar R.C., Garber M., Leeb T., Mauceli E., MacLeod J.N.,
Penedo M.C.T., Raison J.M., Sharpe T., Vogel J., Andersson L.,
Antczak D.F., Biagi T., Binns M.M., Chowdhary B.P., Coleman S.J.,
Della Valle G., Fryc S., Guerin G., Hasegawa T., Hill E.W., Jurka J.,
Kiialainen A., Lindgren G., Liu J., Magnani E., Mickelson J.R.,
Murray J., Nergadze S.G., Onofrio R., Pedroni S., Piras M.F.,
Raudsepp T., Rocchi M., Roeed K.H., Ryder O.A., Searle S., Skow L.,
Swinburne J.E., Syvaenen A.C., Tozaki T., Valberg S.J., Vaudin M.,
White J.R., Zody M.C., Lander E.S., Lindblad-Toh K.;
"Genome sequence, comparative analysis, and population genetics of the
domestic horse.";
Science 326:865-867(2009).
[2] {ECO:0000313|Ensembl:ENSECAP00000014039}
IDENTIFICATION.
STRAIN=Thoroughbred {ECO:0000313|Ensembl:ENSECAP00000014039};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
-!- CATALYTIC ACTIVITY:
Reaction=Hydrolysis of an N(6)-acetyl-lysine residue of a histone
to yield a deacetylated histone.; EC=3.5.1.98;
Evidence={ECO:0000256|PIRNR:PIRNR037913};
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR037913}.
-!- SIMILARITY: Belongs to the histone deacetylase family. HD Type 1
subfamily. {ECO:0000256|PIRNR:PIRNR037913}.
-----------------------------------------------------------------------
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STRING; 9796.ENSECAP00000014039; -.
PaxDb; F7DUN1; -.
Ensembl; ENSECAT00000017295; ENSECAP00000014039; ENSECAG00000016082.
VGNC; VGNC:50592; HDAC1.
eggNOG; KOG1342; Eukaryota.
eggNOG; COG0123; LUCA.
GeneTree; ENSGT00940000154301; -.
InParanoid; F7DUN1; -.
OMA; VSIRAHD; -.
TreeFam; TF106171; -.
Proteomes; UP000002281; Chromosome 2.
Bgee; ENSECAG00000016082; Expressed in 3 organ(s), highest expression level in adult mammalian kidney.
GO; GO:0005829; C:cytosol; IEA:Ensembl.
GO; GO:0000792; C:heterochromatin; IEA:Ensembl.
GO; GO:0000118; C:histone deacetylase complex; IBA:GO_Central.
GO; GO:0043025; C:neuronal cell body; IEA:Ensembl.
GO; GO:0016581; C:NuRD complex; IEA:Ensembl.
GO; GO:0016580; C:Sin3 complex; IEA:Ensembl.
GO; GO:0070822; C:Sin3-type complex; IBA:GO_Central.
GO; GO:0005667; C:transcription factor complex; IEA:Ensembl.
GO; GO:0033613; F:activating transcription factor binding; IEA:Ensembl.
GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:Ensembl.
GO; GO:0070888; F:E-box binding; IEA:Ensembl.
GO; GO:0004407; F:histone deacetylase activity; IBA:GO_Central.
GO; GO:0042826; F:histone deacetylase binding; IEA:Ensembl.
GO; GO:0035851; F:Krueppel-associated box domain binding; IEA:Ensembl.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0032041; F:NAD-dependent histone deacetylase activity (H3-K14 specific); IEA:UniProtKB-EC.
GO; GO:0051059; F:NF-kappaB binding; IEA:Ensembl.
GO; GO:0002039; F:p53 binding; IEA:Ensembl.
GO; GO:1990841; F:promoter-specific chromatin binding; IEA:Ensembl.
GO; GO:0047485; F:protein N-terminus binding; IEA:Ensembl.
GO; GO:0000979; F:RNA polymerase II core promoter sequence-specific DNA binding; IEA:Ensembl.
GO; GO:0001103; F:RNA polymerase II repressing transcription factor binding; IEA:Ensembl.
GO; GO:0001085; F:RNA polymerase II transcription factor binding; IEA:Ensembl.
GO; GO:0003714; F:transcription corepressor activity; IEA:Ensembl.
GO; GO:0032922; P:circadian regulation of gene expression; IEA:Ensembl.
GO; GO:0042733; P:embryonic digit morphogenesis; IEA:Ensembl.
GO; GO:0007492; P:endoderm development; IEA:Ensembl.
GO; GO:0009913; P:epidermal cell differentiation; IEA:Ensembl.
GO; GO:0061029; P:eyelid development in camera-type eye; IEA:Ensembl.
GO; GO:0061198; P:fungiform papilla formation; IEA:Ensembl.
GO; GO:0060789; P:hair follicle placode formation; IEA:Ensembl.
GO; GO:0021766; P:hippocampus development; IEA:Ensembl.
GO; GO:0070932; P:histone H3 deacetylation; IBA:GO_Central.
GO; GO:0070933; P:histone H4 deacetylation; IBA:GO_Central.
GO; GO:0006346; P:methylation-dependent chromatin silencing; IEA:Ensembl.
GO; GO:0043922; P:negative regulation by host of viral transcription; IEA:Ensembl.
GO; GO:0060766; P:negative regulation of androgen receptor signaling pathway; IEA:Ensembl.
GO; GO:0090090; P:negative regulation of canonical Wnt signaling pathway; IEA:Ensembl.
GO; GO:0043124; P:negative regulation of I-kappaB kinase/NF-kappaB signaling; IEA:Ensembl.
GO; GO:2001243; P:negative regulation of intrinsic apoptotic signaling pathway; IEA:Ensembl.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IEA:Ensembl.
GO; GO:0030182; P:neuron differentiation; IEA:Ensembl.
GO; GO:0042475; P:odontogenesis of dentin-containing tooth; IEA:Ensembl.
GO; GO:0008284; P:positive regulation of cell population proliferation; IEA:Ensembl.
GO; GO:0048714; P:positive regulation of oligodendrocyte differentiation; IEA:Ensembl.
GO; GO:0010870; P:positive regulation of receptor biosynthetic process; IEA:Ensembl.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0052548; P:regulation of endopeptidase activity; IEA:Ensembl.
Gene3D; 3.40.800.20; -; 1.
InterPro; IPR000286; His_deacetylse.
InterPro; IPR003084; His_deacetylse_1.
InterPro; IPR023801; His_deacetylse_dom.
InterPro; IPR037138; His_deacetylse_dom_sf.
InterPro; IPR023696; Ureohydrolase_dom_sf.
PANTHER; PTHR10625; PTHR10625; 1.
Pfam; PF00850; Hist_deacetyl; 1.
PIRSF; PIRSF037913; His_deacetylse_1; 1.
PRINTS; PR01270; HDASUPER.
PRINTS; PR01271; HISDACETLASE.
SUPFAM; SSF52768; SSF52768; 1.
3: Inferred from homology;
Chromatin regulator {ECO:0000256|PIRNR:PIRNR037913};
Complete proteome {ECO:0000313|Proteomes:UP000002281};
Hydrolase {ECO:0000256|PIRNR:PIRNR037913,
ECO:0000256|SAAS:SAAS00870288};
Metal-binding {ECO:0000256|PIRSR:PIRSR037913-3};
Nucleus {ECO:0000256|PIRNR:PIRNR037913};
Reference proteome {ECO:0000313|Proteomes:UP000002281};
Transcription {ECO:0000256|PIRNR:PIRNR037913};
Transcription regulation {ECO:0000256|PIRNR:PIRNR037913}.
DOMAIN 12 302 Hist_deacetyl.
{ECO:0000259|Pfam:PF00850}.
ACT_SITE 125 125 Proton acceptor.
{ECO:0000256|PIRSR:PIRSR037913-1}.
METAL 160 160 Divalent metal cation.
{ECO:0000256|PIRSR:PIRSR037913-3}.
METAL 162 162 Divalent metal cation.
{ECO:0000256|PIRSR:PIRSR037913-3}.
METAL 248 248 Divalent metal cation.
{ECO:0000256|PIRSR:PIRSR037913-3}.
BINDING 83 83 Substrate.
{ECO:0000256|PIRSR:PIRSR037913-2}.
BINDING 133 133 Substrate; via carbonyl oxygen.
{ECO:0000256|PIRSR:PIRSR037913-2}.
BINDING 287 287 Substrate.
{ECO:0000256|PIRSR:PIRSR037913-2}.
SEQUENCE 466 AA; 53181 MW; EDFB2C598532D122 CRC64;
GDVGNYYYGQ GHPMKPHRIR MTHNLLLNYG LYRKMEIYRP HKANAEEMTK YHSDDYIKFL
RSIRPDNMSE YSKQMQRFNV GEDCPVFDGL FEFCQLSTGG SVASAVKLNK QQTDIAVNWA
GGLHHAKKSE ASGFCYVNDI VLAILELLKY HQRVLYIDID IHHGDGVEEA FYTTDRVMTV
SFHKYGEYFP GTGDLRDIGA GKGKYYAVNY PLRDGIDDES YEAIFKPVIS KVMEMFQPSA
VVLQCGSDSL SGDRLGCFNL TIKGHAKCVE FVKSFNLPML MLGGGGYTIR NVARCWTYET
SVALDTEIPN ELPYNDYFEY FGPDFKLHIS PSNMTNQNTN EYLEKIKQRL FENLRMLPHA
PGVQMQAIPE DAIPEESGDE DEEDPDKRIS ICSSDKRIAC EEEFSDSDEE GEGGRKNSSN
FKKAKRVKTE DEKEKEPEEK KEVTEEEKTK EEKQEAKGVK EEVKLA


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Kits Elisa; taq POLYMERASE

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Pathways :
WP1211: Arylamine metabolism
WP1619: Amino sugar and nucleotide sugar metabolism
WP2361: Gastric cancer network 1
WP2366: Butyrate-induced histone acetylation
WP2369: Histone modifications
WP300: Histone modifications
WP694: Arylamine metabolism
WP875: Arylamine metabolism
WP993: Arylamine metabolism

Related Genes :
[HDAC9 HDAC7 HDAC7B HDRP KIAA0744 MITR] Histone deacetylase 9 (HD9) (EC 3.5.1.98) (Histone deacetylase 7B) (HD7) (HD7b) (Histone deacetylase-related protein) (MEF2-interacting transcription repressor MITR)
[Hdac9 Hdac7b Hdrp Mitr] Histone deacetylase 9 (HD9) (EC 3.5.1.98) (Histone deacetylase 7B) (HD7b) (Histone deacetylase-related protein) (MEF2-interacting transcription repressor MITR)
[dim-5 29E8.110 NCU04402] Histone-lysine N-methyltransferase, H3 lysine-9 specific dim-5 (EC 2.1.1.43) (Histone H3-K9 methyltransferase dim-5) (H3-K9-HMTase dim-5) (HKMT)
[Hdac6] Histone deacetylase 6 (HD6) (EC 3.5.1.98) (Histone deacetylase mHDA2)
[HDAC1 RPD3L1] Histone deacetylase 1 (HD1) (EC 3.5.1.98)
[HDAC10] Polyamine deacetylase HDAC10 (EC 3.5.1.48) (EC 3.5.1.62) (Histone deacetylase 10) (HD10)
[Hdac2 Yy1bp] Histone deacetylase 2 (HD2) (EC 3.5.1.98) (YY1 transcription factor-binding protein)
[HDAC8 HDACL1 CDA07] Histone deacetylase 8 (HD8) (EC 3.5.1.98)
[HDAC6 KIAA0901 JM21] Histone deacetylase 6 (HD6) (EC 3.5.1.98)
[hchA A8C65_13880 A9R57_25255 AKG99_20940 AMK83_16550 B7C53_22525 B9M99_11580 B9T59_01945 BJJ90_15205 BMT49_12710 BMT53_00170 BUE81_10670 BW690_17225 BZL69_29425 C2U48_24800 C5715_19445 C5N07_21380 C6669_19295 C7B06_02290 C7B07_03930 CDL37_00765 CG691_19145 CG705_13560 CG706_14580 CIJ94_05515 COD46_23180 CRD98_26150 D3I61_11545 DL800_09215 DNQ41_14245 DQE83_22775 DTL43_21780 DTL84_23375 DTM25_06080 EC95NR1_00961 ERS085379_01273 ERS085386_05041 HMPREF3040_01583 HW43_13705 NCTC10082_04431 NCTC10418_03071 NCTC10767_03558 NCTC11022_01867 NCTC11126_04427 NCTC11181_05650 NCTC12950_02263 NCTC13462_05714 NCTC8985_00529 NCTC9111_05933 NCTC9703_00277 PU06_24500 SAMEA3472055_03589 SAMEA3472056_01268 SAMEA3472070_00654 SAMEA3472080_04213 SAMEA3472090_03376 SAMEA3472110_00060 SAMEA3472112_00448 SAMEA3752372_00752 SAMEA3753106_00003 SAMEA3753391_00513 UN91_23615 WQ89_10695] Protein/nucleic acid deglycase HchA (EC 3.1.2.-) (EC 3.5.1.-) (EC 3.5.1.124) (Maillard deglycase)
[HDAC2] Histone deacetylase 2 (HD2) (EC 3.5.1.98)
[HST3 YOR025W OR26.15] NAD-dependent histone deacetylase HST3 (EC 3.5.1.-) (Homologous to SIR2 protein 3) (Regulatory protein SIR2 homolog 3)
[HDAC4 KIAA0288] Histone deacetylase 4 (HD4) (EC 3.5.1.98)
[Hdac1] Histone deacetylase 1 (HD1) (EC 3.5.1.98)
[hda-1 C53A5.3] Histone deacetylase 1 (EC 3.5.1.98)
[HDA6 RPD3B At5g63110 MDC12.7] Histone deacetylase 6 (EC 3.5.1.98)
[Hdac1] Histone deacetylase 1 (HD1) (EC 3.5.1.98)
[Hdac10] Polyamine deacetylase HDAC10 (EC 3.5.1.48) (EC 3.5.1.62) (Histone deacetylase 10) (HD10)
[SIR2 MAR1 YDL042C D2714] NAD-dependent histone deacetylase SIR2 (EC 3.5.1.-) (Regulatory protein SIR2) (Silent information regulator 2)
[Hdac10] Polyamine deacetylase HDAC10 (EC 3.5.1.48) (EC 3.5.1.62) (Histone deacetylase 10) (HD10)
[aphA aph] Acetylpolyamine amidohydrolase (APAH) (EC 3.5.1.-) (Acetylcadaverine deacetylase) (Acetylpolyamine deacetylase) (Acetylputrescine deacetylase) (EC 3.5.1.62) (Acetylspermidine deacetylase) (EC 3.5.1.48)
[KAT2A GCN5 GCN5L2] Histone acetyltransferase KAT2A (EC 2.3.1.48) (General control of amino acid synthesis protein 5-like 2) (Histone acetyltransferase GCN5) (hGCN5) (Histone succinyltransferase KAT2A) (EC 2.3.1.-) (Lysine acetyltransferase 2A) (STAF97)
[Kat2a Gcn5l2] Histone acetyltransferase KAT2A (EC 2.3.1.48) (General control of amino acid synthesis protein 5-like 2) (Histone acetyltransferase GCN5) (MmGCN5) (Histone succinyltransferase KAT2A) (EC 2.3.1.-) (Lysine acetyltransferase 2A)
[Sirt1 Sir2l1] NAD-dependent protein deacetylase sirtuin-1 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 1) (SIR2-like protein 1) (SIR2alpha) (Sir2) (mSIR2a) [Cleaved into: SirtT1 75 kDa fragment (75SirT1)]
[HIST1H3A H3FA; HIST1H3B H3FL; HIST1H3C H3FC; HIST1H3D H3FB; HIST1H3E H3FD; HIST1H3F H3FI; HIST1H3G H3FH; HIST1H3H H3FK; HIST1H3I H3FF; HIST1H3J H3FJ] Histone H3.1 (Histone H3/a) (Histone H3/b) (Histone H3/c) (Histone H3/d) (Histone H3/f) (Histone H3/h) (Histone H3/i) (Histone H3/j) (Histone H3/k) (Histone H3/l)
[SIRT2 SIR2L SIR2L2] NAD-dependent protein deacetylase sirtuin-2 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 2) (SIR2-like protein 2)
[EP300 P300] Histone acetyltransferase p300 (p300 HAT) (EC 2.3.1.48) (E1A-associated protein p300) (Histone butyryltransferase p300) (EC 2.3.1.-) (Histone crotonyltransferase p300) (EC 2.3.1.-) (Protein propionyltransferase p300) (EC 2.3.1.-)
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[Sirt2 Sir2l2] NAD-dependent protein deacetylase sirtuin-2 (EC 3.5.1.-) (Regulatory protein SIR2 homolog 2) (SIR2-like protein 2) (mSIR2L2)
[aro-1 aro-2 aro-4 aro-5 aro-9 B14H13.20 NCU016321] Pentafunctional AROM polypeptide [Includes: 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4); 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS); Shikimate kinase (SK) (EC 2.7.1.71); 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10); Shikimate dehydrogenase (EC 1.1.1.25)]

Bibliography :
[30755246] Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups.
[30747231] Combined inhibition of sonic Hedgehog signaling and histone deacetylase is an effective treatment for liver cancer.
[30632447] Selective and nonselective HDAC8 inhibitors: a therapeutic patent review.
[30615915] Identification and expression of mangrove rivulus (Kryptolebias marmoratus) histone deacetylase (HDAC) and lysine acetyltransferase (KAT) genes.
[30615846] miRNA-548ah promotes the replication and expression of hepatitis B virus by targeting histone deacetylase 4.
[30599067] Transcriptional repression of the ectodomain sheddase ADAM10 by TBX2 and potential implication for Alzheimer's disease.
[30596107] HLA-A2-Restricted Epitopes Identified from MTA1 Could Elicit Antigen-Specific Cytotoxic T Lymphocyte Response.
[30587243] Identification of novel multi-stage histone deacetylase (HDAC) inhibitors that impair Schistosoma mansoni viability and egg production.
[30584102] Epigenetic editing by CRISPR/dCas9 in .
[30581875] Development of a Cell-Based High-Throughput Screening Assay to Identify Porcine Host Defense Peptide-Inducing Compounds.
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