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IRF tryptophan pentad repeat domain-containing protein

 A0A2R9AA14_PANPA        Unreviewed;       516 AA.
A0A2R9AA14;
20-JUN-2018, integrated into UniProtKB/TrEMBL.
20-JUN-2018, sequence version 1.
12-AUG-2020, entry version 15.
RecName: Full=IRF tryptophan pentad repeat domain-containing protein {ECO:0000259|PROSITE:PS51507};
Name=IRF7 {ECO:0000313|Ensembl:ENSPPAP00000014100};
Pan paniscus (Pygmy chimpanzee) (Bonobo).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
Pan.
NCBI_TaxID=9597 {ECO:0000313|Ensembl:ENSPPAP00000014100, ECO:0000313|Proteomes:UP000240080};
[1] {ECO:0000313|Ensembl:ENSPPAP00000014100, ECO:0000313|Proteomes:UP000240080}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=22722832; DOI=10.1038/nature11128;
Prufer K., Munch K., Hellmann I., Akagi K., Miller J.R., Walenz B.,
Koren S., Sutton G., Kodira C., Winer R., Knight J.R., Mullikin J.C.,
Meader S.J., Ponting C.P., Lunter G., Higashino S., Hobolth A., Dutheil J.,
Karakoc E., Alkan C., Sajjadian S., Catacchio C.R., Ventura M.,
Marques-Bonet T., Eichler E.E., Andre C., Atencia R., Mugisha L.,
Junhold J., Patterson N., Siebauer M., Good J.M., Fischer A., Ptak S.E.,
Lachmann M., Symer D.E., Mailund T., Schierup M.H., Andres A.M., Kelso J.,
Paabo S.;
"The bonobo genome compared with the chimpanzee and human genomes.";
Nature 486:527-531(2012).
[2] {ECO:0000313|Ensembl:ENSPPAP00000014100}
IDENTIFICATION.
Ensembl;
Submitted (APR-2018) to UniProtKB.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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EMBL; AJFE02016347; -; NOT_ANNOTATED_CDS; Genomic_DNA.
RefSeq; XP_008975721.1; XM_008977473.1.
Ensembl; ENSPPAT00000036776; ENSPPAP00000014100; ENSPPAG00000030184.
GeneID; 100991659; -.
CTD; 3665; -.
GeneTree; ENSGT00940000160931; -.
Proteomes; UP000240080; Chromosome 11.
GO; GO:0005829; C:cytosol; IEA:Ensembl.
GO; GO:0005654; C:nucleoplasm; IEA:Ensembl.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:Ensembl.
GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IEA:Ensembl.
GO; GO:0051607; P:defense response to virus; IEA:Ensembl.
GO; GO:0016064; P:immunoglobulin mediated immune response; IEA:Ensembl.
GO; GO:0032607; P:interferon-alpha production; IEA:Ensembl.
GO; GO:0032608; P:interferon-beta production; IEA:Ensembl.
GO; GO:0032727; P:positive regulation of interferon-alpha production; IEA:Ensembl.
GO; GO:0032728; P:positive regulation of interferon-beta production; IEA:Ensembl.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:Ensembl.
GO; GO:0060340; P:positive regulation of type I interferon-mediated signaling pathway; IEA:Ensembl.
GO; GO:0002819; P:regulation of adaptive immune response; IEA:Ensembl.
GO; GO:0034124; P:regulation of MyD88-dependent toll-like receptor signaling pathway; IEA:Ensembl.
GO; GO:0034127; P:regulation of MyD88-independent toll-like receptor signaling pathway; IEA:Ensembl.
GO; GO:0045351; P:type I interferon biosynthetic process; IEA:Ensembl.
GO; GO:0060337; P:type I interferon signaling pathway; IEA:Ensembl.
CDD; cd00103; IRF; 1.
Gene3D; 1.10.10.10; -; 1.
Gene3D; 2.60.200.10; -; 1.
InterPro; IPR019817; Interferon_reg_fac_CS.
InterPro; IPR001346; Interferon_reg_fact_DNA-bd_dom.
InterPro; IPR019471; Interferon_reg_factor-3.
InterPro; IPR017855; SMAD-like_dom_sf.
InterPro; IPR008984; SMAD_FHA_dom_sf.
InterPro; IPR036388; WH-like_DNA-bd_sf.
InterPro; IPR036390; WH_DNA-bd_sf.
PANTHER; PTHR11949; PTHR11949; 1.
Pfam; PF00605; IRF; 1.
Pfam; PF10401; IRF-3; 1.
PRINTS; PR00267; INTFRNREGFCT.
SMART; SM00348; IRF; 1.
SMART; SM01243; IRF-3; 1.
SUPFAM; SSF46785; SSF46785; 1.
SUPFAM; SSF49879; SSF49879; 1.
PROSITE; PS00601; IRF_1; 1.
PROSITE; PS51507; IRF_2; 1.
4: Predicted;
DNA-binding {ECO:0000256|ARBA:ARBA00023125};
Reference proteome {ECO:0000313|Proteomes:UP000240080};
Transcription {ECO:0000256|ARBA:ARBA00023015};
Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
DOMAIN 24..139
/note="IRF tryptophan pentad repeat"
/evidence="ECO:0000259|PROSITE:PS51507"
REGION 1..20
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
REGION 82..101
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
REGION 146..172
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
REGION 255..298
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
COMPBIAS 282..298
/note="Polar"
/evidence="ECO:0000256|SAM:MobiDB-lite"
SEQUENCE 516 AA; 55771 MW; 13A64CA3385962CF CRC64;
MPVPERPAAG PDSPRPDTRR AAPRVLFGEW LLGEISSGCY EGLQWLDEAR TCFRVPWKHF
ARKDLSEADA RIFKAWAVAR GRWPPSSRGG DPPPEAETAE RAGWKTNFRC ALRSTRRFVM
LRDNSGDPAD PHKVYALSRE LCWREGPGTD QTEAEAPAAV PPPQGGPPGP FLAHTDAGLQ
APGPLPAPAG DKGDLLLQAV QQSCLADHLL TASWGADPVP TKAPGEGQEG LPLTGACAGG
PGLPAGELYG WAVETTPSPG PQPAALTTGE AAAPESPHQA EPYLSPSPSA RTAVQEPSPG
TLDVTIMYKG RTVLQKVVGH PSCTFLYGPP DPAVRATDPQ QVAFPSPAEL PDQKQLRYTE
ELLRHVAPGL HLELRGPQLW ARRMGKCKVY WEVGGPPGSA SPSTPACLLP RNCDTPIFDF
RVFFGELVEF RARQRRGSPR YTIYLGFGQD LSAGRPKEKS LVLVKLEPWL CRVHLEGTQR
EGVSSLDSSS LSLCLSSTNS LYDDIECFLM ELEQPA


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