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Interferon regulatory factor 7

 F7FGY2_RAT              Unreviewed;       456 AA.
F7FGY2;
22-JUL-2015, integrated into UniProtKB/TrEMBL.
22-JUL-2015, sequence version 1.
12-AUG-2020, entry version 38.
SubName: Full=Interferon regulatory factor 7 {ECO:0000313|Ensembl:ENSRNOP00000023504};
Name=Irf7 {ECO:0000313|Ensembl:ENSRNOP00000023504,
ECO:0000313|RGD:1307828};
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
Murinae; Rattus.
NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000023504, ECO:0000313|Proteomes:UP000002494};
[1] {ECO:0000313|Ensembl:ENSRNOP00000023504, ECO:0000313|Proteomes:UP000002494}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000023504,
ECO:0000313|Proteomes:UP000002494};
PubMed=15057822; DOI=10.1038/nature02426;
Rat Genome Sequencing Project Consortium;
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D.,
Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L.,
Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D.,
Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M.,
Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C.,
Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J.,
Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H.,
Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X.,
Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q.,
Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P.,
Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A.,
Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C.,
Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J.,
Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F.,
Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A.,
Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A.,
Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J.,
Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E.,
Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C.,
Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L.,
Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W.,
Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y.,
Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V.,
Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M.,
Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S.,
Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B.,
Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R.,
Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J.,
Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D.,
Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S.,
Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S.,
Mockrin S., Collins F.S.;
"Genome sequence of the Brown Norway rat yields insights into mammalian
evolution.";
Nature 428:493-521(2004).
[2] {ECO:0000313|Ensembl:ENSRNOP00000023504}
IDENTIFICATION.
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000023504};
Ensembl;
Submitted (FEB-2012) to UniProtKB.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; AC118351; -; NOT_ANNOTATED_CDS; Genomic_DNA.
SMR; F7FGY2; -.
STRING; 10116.ENSRNOP00000023504; -.
PaxDb; F7FGY2; -.
PRIDE; F7FGY2; -.
Ensembl; ENSRNOT00000023504; ENSRNOP00000023504; ENSRNOG00000017414.
RGD; 1307828; Irf7.
eggNOG; ENOG502R2I9; Eukaryota.
GeneTree; ENSGT00940000160931; -.
OMA; HYRKKEM; -.
TreeFam; TF328512; -.
Reactome; R-RNO-3134963; DEx/H-box helicases activate type I IFN and inflammatory cytokines production.
Reactome; R-RNO-9013973; TICAM1-dependent activation of IRF3/IRF7.
Reactome; R-RNO-918233; TRAF3-dependent IRF activation pathway.
Reactome; R-RNO-933541; TRAF6 mediated IRF7 activation.
Reactome; R-RNO-936964; Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon.
Reactome; R-RNO-975110; TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling.
Proteomes; UP000002494; Chromosome 1.
Bgee; ENSRNOG00000017414; Expressed in spleen and 20 other tissues.
GO; GO:0005737; C:cytoplasm; ISO:RGD.
GO; GO:0005829; C:cytosol; IEA:Ensembl.
GO; GO:0005654; C:nucleoplasm; IEA:Ensembl.
GO; GO:0005634; C:nucleus; ISO:RGD.
GO; GO:0000987; F:cis-regulatory region sequence-specific DNA binding; ISO:RGD.
GO; GO:0003677; F:DNA binding; ISO:RGD.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; ISO:RGD.
GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; ISO:RGD.
GO; GO:0051607; P:defense response to virus; ISO:RGD.
GO; GO:0002376; P:immune system process; IBA:GO_Central.
GO; GO:0016064; P:immunoglobulin mediated immune response; ISO:RGD.
GO; GO:0032607; P:interferon-alpha production; ISO:RGD.
GO; GO:0032608; P:interferon-beta production; ISO:RGD.
GO; GO:0032727; P:positive regulation of interferon-alpha production; ISO:RGD.
GO; GO:0032728; P:positive regulation of interferon-beta production; ISO:RGD.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; ISO:RGD.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISO:RGD.
GO; GO:0032481; P:positive regulation of type I interferon production; ISO:RGD.
GO; GO:0060340; P:positive regulation of type I interferon-mediated signaling pathway; ISO:RGD.
GO; GO:0002819; P:regulation of adaptive immune response; ISO:RGD.
GO; GO:0010468; P:regulation of gene expression; ISO:RGD.
GO; GO:0034124; P:regulation of MyD88-dependent toll-like receptor signaling pathway; ISO:RGD.
GO; GO:0034127; P:regulation of MyD88-independent toll-like receptor signaling pathway; ISO:RGD.
GO; GO:0045351; P:type I interferon biosynthetic process; ISO:RGD.
GO; GO:0060337; P:type I interferon signaling pathway; ISO:RGD.
CDD; cd00103; IRF; 1.
Gene3D; 1.10.10.10; -; 1.
Gene3D; 2.60.200.10; -; 1.
InterPro; IPR019817; Interferon_reg_fac_CS.
InterPro; IPR001346; Interferon_reg_fact_DNA-bd_dom.
InterPro; IPR019471; Interferon_reg_factor-3.
InterPro; IPR017855; SMAD-like_dom_sf.
InterPro; IPR008984; SMAD_FHA_dom_sf.
InterPro; IPR036388; WH-like_DNA-bd_sf.
InterPro; IPR036390; WH_DNA-bd_sf.
PANTHER; PTHR11949; PTHR11949; 1.
Pfam; PF00605; IRF; 1.
Pfam; PF10401; IRF-3; 1.
PRINTS; PR00267; INTFRNREGFCT.
SMART; SM00348; IRF; 1.
SMART; SM01243; IRF-3; 1.
SUPFAM; SSF46785; SSF46785; 1.
SUPFAM; SSF49879; SSF49879; 1.
PROSITE; PS00601; IRF_1; 1.
PROSITE; PS51507; IRF_2; 1.
4: Predicted;
DNA-binding {ECO:0000256|ARBA:ARBA00023125};
Reference proteome {ECO:0000313|Proteomes:UP000002494};
Transcription {ECO:0000256|ARBA:ARBA00023015};
Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
DOMAIN 9..123
/note="IRF tryptophan pentad repeat"
/evidence="ECO:0000259|PROSITE:PS51507"
REGION 190..212
/note="Disordered"
/evidence="ECO:0000256|SAM:MobiDB-lite"
SEQUENCE 456 AA; 50802 MW; 511D1A0F5B3A4A1A CRC64;
MAEVRGVQRV LFGDWLLGEV SSGRYEGLQW LNEAHTVFRV PWKHFSRRDL DEADAQIFKA
WAVARGRWPP SGVNLPPPEA EAAERRGWKT NFRCALRSTG RFILRQDNSG DPADPHKVYE
LSPELGSTTG PALENREEVT LSSALPTQGM SLGSFLARGN AGLQTPSPLL SGDAGDLLLQ
VLQYSHLLDS ESRADSVPPQ ASGQEQEHLP EEPHAAWQME ATSSPRLQHP VLMTERNLGS
LDVTIMYKGR TVLQAMVGHP RCVFLYSPVG SAIRTSEPQP VIFPSPAELP DQKQLHYTET
LLQHVSPGLQ LELRGPSLWA LRMGKCKVYW EVGSPMGSTN PSTPAQLLER NCHTPIFDFS
TFFRELEEFR ARRRQGSPHY TIYLGFGQDL SAGRPKEKSL ILVKLEPWLC KTHLEGVQRE
GVSSLDSSSL GLCLSSTNSL YDDIEHFLMD LEAQSN


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WP2113: Type III interferon signaling
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WP585: Interferon type I

Related Genes :
[IRF7] Interferon regulatory factor 7 (IRF-7)
[Irf7] Interferon regulatory factor 7 (IRF-7)
[Irf4 Spip] Interferon regulatory factor 4 (IRF-4) (Lymphocyte-specific interferon regulatory factor) (LSIRF) (NF-EM5) (PU.1 interaction partner) (Transcriptional activator PIP)
[IRF9 ISGF3G] Interferon regulatory factor 9 (IRF-9) (IFN-alpha-responsive transcription factor subunit) (ISGF3 p48 subunit) (Interferon-stimulated gene factor 3 gamma) (ISGF-3 gamma) (Transcriptional regulator ISGF3 subunit gamma)
[IRF4 MUM1] Interferon regulatory factor 4 (IRF-4) (Lymphocyte-specific interferon regulatory factor) (LSIRF) (Multiple myeloma oncogene 1) (NF-EM5)
[IRF3] Interferon regulatory factor 3 (IRF-3)
[IRF1] Interferon regulatory factor 1 (IRF-1)
[IRF5] Interferon regulatory factor 5 (IRF-5)
[IRF2] Interferon regulatory factor 2 (IRF-2)
[Irf1] Interferon regulatory factor 1 (IRF-1)
[Irf3] Interferon regulatory factor 3 (IRF-3)
[IRF8 ICSBP1] Interferon regulatory factor 8 (IRF-8) (Interferon consensus sequence-binding protein) (H-ICSBP) (ICSBP)
[Irf1] Interferon regulatory factor 1 (IRF-1)
[Irf8 Icsbp Icsbp1] Interferon regulatory factor 8 (IRF-8) (Interferon consensus sequence-binding protein) (ICSBP)
[IRF2BP2] Interferon regulatory factor 2-binding protein 2 (IRF-2-binding protein 2) (IRF-2BP2)
[PRDM1 BLIMP1] PR domain zinc finger protein 1 (EC 2.1.1.-) (BLIMP-1) (Beta-interferon gene positive regulatory domain I-binding factor) (PR domain-containing protein 1) (Positive regulatory domain I-binding factor 1) (PRDI-BF1) (PRDI-binding factor 1)
[Irf6] Interferon regulatory factor 6 (IRF-6)
[IRF2BP1] Interferon regulatory factor 2-binding protein 1 (IRF-2-binding protein 1) (IRF-2BP1) (Probable E3 ubiquitin-protein ligase IRF2BP1) (EC 2.3.2.27) (Probable RING-type E3 ubiquitin transferase IRF2BP1)
[EIF2AK2 PKR PRKR] Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.11.1) (Eukaryotic translation initiation factor 2-alpha kinase 2) (eIF-2A protein kinase 2) (Interferon-inducible RNA-dependent protein kinase) (P1/eIF-2A protein kinase) (Protein kinase RNA-activated) (PKR) (Protein kinase R) (Tyrosine-protein kinase EIF2AK2) (EC 2.7.10.2) (p68 kinase)
[IRF6] Interferon regulatory factor 6 (IRF-6)
[Prdm1 Blimp1] PR domain zinc finger protein 1 (EC 2.1.1.-) (B lymphocyte-induced maturation protein 1) (Blimp-1) (Beta-interferon gene positive regulatory domain I-binding factor) (PR domain-containing protein 1)
[IRF1] Interferon regulatory factor 1 (IRF-1)
[Eif2ak2 Pkr Prkr Tik] Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.11.1) (Eukaryotic translation initiation factor 2-alpha kinase 2) (eIF-2A protein kinase 2) (Interferon-inducible RNA-dependent protein kinase) (P1/eIF-2A protein kinase) (Protein kinase RNA-activated) (PKR) (Protein kinase R) (Serine/threonine-protein kinase TIK) (Tyrosine-protein kinase EIF2AK2) (EC 2.7.10.2) (p68 kinase)
[IRF3] Interferon regulatory factor 3 (IRF-3)
[Irf3 rCG_54412] Interferon regulatory factor 3 (Interferon regulatory factor 3, isoform CRA_c)
[Irf5] Interferon regulatory factor 5 (IRF-5)
[IL6 IFNB2] Interleukin-6 (IL-6) (B-cell stimulatory factor 2) (BSF-2) (CTL differentiation factor) (CDF) (Hybridoma growth factor) (Interferon beta-2) (IFN-beta-2)
[Eif2ak2 Prkr] Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.11.1) (Eukaryotic translation initiation factor 2-alpha kinase 2) (eIF-2A protein kinase 2) (Interferon-inducible RNA-dependent protein kinase) (Protein kinase RNA-activated) (PKR) (Protein kinase R) (Tyrosine-protein kinase EIF2AK2) (EC 2.7.10.2)
[IRF2BPL C14orf4 EAP1 KIAA1865 My039] Probable E3 ubiquitin-protein ligase IRF2BPL (EC 2.3.2.27) (Enhanced at puberty protein 1) (Interferon regulatory factor 2-binding protein-like)
[IFNGR2 IFNGT1] Interferon gamma receptor 2 (IFN-gamma receptor 2) (IFN-gamma-R2) (Interferon gamma receptor accessory factor 1) (AF-1) (Interferon gamma receptor beta-chain) (IFN-gamma-R-beta) (Interferon gamma transducer 1)

Bibliography :
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[32667932] Impact and prognosis of the expression of IFN-α among tuberculosis patients.
[32642412] Arsenic trioxide induces regulatory functions of plasmacytoid dendritic cells through interferon- inhibition.
[32641587] RAGE impairs murine diabetic atherosclerosis regression and implicates IRF7 in macrophage inflammation and cholesterol metabolism.
[32567373] Clinical Management and Therapeutic Strategies for the Thyroid-Associated Ophthalmopathy: Current and Future Perspectives.
[32531971] Evaluation of Innate Immune Mediators Related to Respiratory Viruses in the Lung of Stable COPD Patients.
[32449925] Macrophage development and activation involve coordinated intron retention in key inflammatory regulators.
[32437400] Interferon regulatory factor 7 mediates obesity-associated MCP-1 transcription.
[32319620] TET2 is involved in DNA hydroxymethylation, cell proliferation and inflammatory response in keratinocytes.
[32298923] E3 ubiquitin ligase ASB8 negatively regulates interferon via regulating TBK1/IKKi homeostasis.